Wall clock time and date at job start Tue Mar 31 2020 16:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35432 * 116.99649 * 2 1 4 4 N 1.32238 * 119.80055 * 0.29217 * 3 2 1 5 5 C 1.31882 * 121.79731 * 180.32969 * 4 3 2 6 6 C 1.50704 * 119.40441 * 179.67398 * 5 4 3 7 7 C 1.38353 * 121.18665 * 359.66112 * 5 4 3 8 8 C 1.38338 * 119.45927 * 0.02562 * 7 5 4 9 9 C 1.39984 * 118.34808 * 359.97438 * 8 7 5 10 10 C 1.47523 * 120.59523 * 180.02562 * 9 8 7 11 11 O 1.21587 * 120.00162 * 215.63509 * 10 9 8 12 12 N 1.34772 * 119.99977 * 35.64225 * 10 9 8 13 13 C 1.47363 * 125.53158 * 356.76337 * 12 10 9 14 14 C 1.54940 * 105.10288 * 156.51692 * 13 12 10 15 15 C 1.54792 * 101.50167 * 36.73163 * 14 13 12 16 16 H 1.08995 * 113.15869 * 85.61986 * 15 14 13 17 17 C 1.53271 * 109.74802 * 212.29626 * 15 14 13 18 18 N 1.46584 * 108.16112 * 95.76092 * 17 15 14 19 19 C 1.36928 * 125.30769 * 177.88391 * 18 17 15 20 20 H 1.08002 * 119.99908 * 0.02562 * 19 18 17 21 21 C 1.38817 * 120.00301 * 180.02562 * 19 18 17 22 22 N 1.31620 * 119.99733 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00256 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46907 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46856 * 119.99961 * 23 21 19 26 26 H 1.48489 * 109.47098 * 240.00263 * 23 21 19 27 27 C 1.46615 * 109.38732 * 357.89167 * 18 17 15 28 28 C 1.47222 * 125.53177 * 175.71861 * 12 10 9 29 29 H 1.09002 * 112.28264 * 56.24317 * 28 12 10 30 30 H 1.09006 * 109.46834 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47363 * 299.99851 * 1 2 3 32 32 H 1.09004 * 109.47359 * 60.00000 * 1 2 3 33 33 H 1.09001 * 109.47462 * 269.98499 * 6 5 4 34 34 H 1.08998 * 109.46866 * 29.98841 * 6 5 4 35 35 H 1.09002 * 109.46865 * 149.98535 * 6 5 4 36 36 H 1.08006 * 120.26855 * 180.02562 * 7 5 4 37 37 H 1.07999 * 120.82384 * 180.02562 * 8 7 5 38 38 H 1.09002 * 110.68062 * 37.36964 * 13 12 10 39 39 H 1.09005 * 109.82637 * 275.21614 * 13 12 10 40 40 H 1.09005 * 111.01765 * 278.67363 * 14 13 12 41 41 H 1.09001 * 111.05425 * 154.80464 * 14 13 12 42 42 H 1.09003 * 109.73449 * 215.44832 * 17 15 14 43 43 H 1.08998 * 109.73350 * 336.07408 * 17 15 14 44 44 H 0.97000 * 120.00002 * 180.02562 * 22 21 19 45 45 H 1.08999 * 109.90893 * 258.45251 * 27 18 17 46 46 H 1.09000 * 109.91539 * 137.16818 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2067 0.0000 4 7 1.3196 2.3132 0.0059 5 6 1.8769 3.5085 -0.0004 6 6 0.9997 4.7339 -0.0006 7 6 3.2524 3.6576 -0.0064 8 6 4.0586 2.5335 -0.0064 9 6 3.4449 1.2754 0.0003 10 6 4.2570 0.0438 0.0012 11 8 3.8748 -0.9369 -0.6075 12 7 5.4225 0.0056 0.6768 13 6 6.0326 1.1376 1.3966 14 6 6.9600 0.4900 2.4555 15 6 7.5048 -0.7345 1.6810 16 1 8.3790 -0.5026 1.0726 17 6 7.7549 -1.8928 2.6532 18 7 6.5781 -2.7666 2.6351 19 6 6.4453 -3.9301 3.3447 20 1 7.2487 -4.2684 3.9823 21 6 5.2781 -4.6748 3.2447 22 7 4.2992 -4.2628 2.4673 23 14 5.0967 -6.2617 4.2133 24 1 6.3293 -6.5013 5.0061 25 1 3.9330 -6.1522 5.1293 26 1 4.8835 -7.3927 3.2750 27 6 5.5653 -2.2006 1.7387 28 6 6.2821 -1.1792 0.8337 29 1 6.5742 -1.6078 -0.1251 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 0.7841 5.0262 -1.0284 34 1 0.0667 4.5129 0.5176 35 1 1.5140 5.5490 0.5086 36 1 3.6931 4.6437 -0.0110 37 1 5.1348 2.6243 -0.0106 38 1 5.2669 1.7426 1.8822 39 1 6.6147 1.7456 0.7039 40 1 6.3933 0.1774 3.3326 41 1 7.7674 1.1667 2.7352 42 1 8.6348 -2.4539 2.3386 43 1 7.9080 -1.5023 3.6592 44 1 3.4834 -4.7829 2.3977 45 1 4.7912 -1.7013 2.3214 46 1 5.1246 -2.9905 1.1305 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076330697.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:31 Heat of formation + Delta-G solvation = -15.335485 kcal Electronic energy + Delta-G solvation = -29460.921416 eV Core-core repulsion = 25544.258737 eV Total energy + Delta-G solvation = -3916.662679 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.15049 -41.14189 -39.17003 -39.12385 -36.70702 -34.59034 -33.70124 -32.77663 -32.21840 -30.46285 -29.45941 -28.55287 -27.66472 -26.48787 -24.67206 -24.13362 -23.13383 -22.38644 -21.32201 -20.38804 -19.21908 -18.95612 -18.37062 -17.91020 -17.35693 -17.00606 -16.73927 -16.33875 -15.77011 -15.73546 -15.26374 -15.10571 -15.03347 -14.97877 -14.61240 -14.26954 -14.06144 -13.79442 -13.53950 -13.36603 -13.30876 -13.22734 -13.00208 -12.99412 -12.82617 -12.73438 -12.59405 -12.13288 -12.07978 -11.89086 -11.72419 -11.52413 -11.40837 -11.20518 -10.90640 -10.78225 -10.61563 -9.70858 -9.42937 -8.93522 -7.80528 -5.26692 -0.29824 0.21865 1.40348 1.43288 1.53929 1.66047 1.99849 2.06174 2.46400 2.68679 3.07253 3.29679 3.37555 3.57972 3.67066 3.76293 3.83236 3.90237 4.02314 4.22341 4.27479 4.30301 4.30517 4.32217 4.41262 4.48439 4.51800 4.59980 4.68064 4.72376 4.82653 4.83961 4.93302 4.96647 4.99931 5.10761 5.16593 5.18427 5.22315 5.45610 5.48824 5.50803 5.56980 5.78791 6.18094 6.22516 6.54605 6.74979 7.04472 7.18461 7.76644 8.37300 9.21723 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.014285 B = 0.003876 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.655551 B = 7222.898323 C = 8620.090439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.321 6.321 3 C 0.345 3.655 4 N -0.557 5.557 5 C 0.176 3.824 6 C -0.103 4.103 7 C -0.201 4.201 8 C -0.003 4.003 9 C -0.233 4.233 10 C 0.569 3.431 11 O -0.575 6.575 12 N -0.605 5.605 13 C 0.093 3.907 14 C -0.114 4.114 15 C -0.090 4.090 16 H 0.136 0.864 17 C 0.135 3.865 18 N -0.625 5.625 19 C -0.241 4.241 20 H 0.091 0.909 21 C -0.075 4.075 22 N -0.951 5.951 23 Si 0.983 3.017 24 H -0.256 1.256 25 H -0.294 1.294 26 H -0.294 1.294 27 C 0.187 3.813 28 C 0.119 3.881 29 H 0.070 0.930 30 H 0.103 0.897 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.113 0.887 36 H 0.194 0.806 37 H 0.181 0.819 38 H 0.085 0.915 39 H 0.117 0.883 40 H 0.047 0.953 41 H 0.134 0.866 42 H 0.033 0.967 43 H 0.038 0.962 44 H 0.241 0.759 45 H -0.028 1.028 46 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.052 25.755 -4.295 26.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.226 6.226 3 C 0.166 3.834 4 N -0.283 5.283 5 C 0.038 3.962 6 C -0.160 4.160 7 C -0.220 4.220 8 C -0.028 4.028 9 C -0.239 4.239 10 C 0.358 3.642 11 O -0.454 6.454 12 N -0.338 5.338 13 C -0.028 4.028 14 C -0.152 4.152 15 C -0.109 4.109 16 H 0.154 0.846 17 C 0.011 3.989 18 N -0.351 5.351 19 C -0.369 4.369 20 H 0.109 0.891 21 C -0.267 4.267 22 N -0.600 5.600 23 Si 0.811 3.189 24 H -0.180 1.180 25 H -0.222 1.222 26 H -0.221 1.221 27 C 0.060 3.940 28 C 0.014 3.986 29 H 0.088 0.912 30 H 0.121 0.879 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.116 0.884 34 H 0.091 0.909 35 H 0.131 0.869 36 H 0.211 0.789 37 H 0.198 0.802 38 H 0.103 0.897 39 H 0.135 0.865 40 H 0.066 0.934 41 H 0.152 0.848 42 H 0.051 0.949 43 H 0.056 0.944 44 H 0.051 0.949 45 H -0.011 1.011 46 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -0.141 24.722 -4.602 25.147 hybrid contribution -0.379 -1.914 0.397 1.991 sum -0.520 22.808 -4.205 23.198 Atomic orbital electron populations 1.23048 0.75833 1.04032 1.02737 1.86457 1.24570 1.25253 1.86355 1.20019 0.88614 0.85114 0.89604 1.67314 1.40445 0.98615 1.21964 1.22063 0.94003 0.91899 0.88227 1.20945 0.98756 0.91574 1.04693 1.22236 0.92889 1.01159 1.05733 1.22214 1.02748 0.88602 0.89252 1.19901 0.91179 0.95480 1.17380 1.18062 0.79902 0.87495 0.78692 1.90799 1.70726 1.38302 1.45592 1.48472 1.20790 1.13007 1.51486 1.22941 0.96798 0.88449 0.94603 1.22836 0.99665 0.96265 0.96402 1.22944 0.96634 0.95501 0.95856 0.84643 1.21305 0.89579 0.90626 0.97439 1.44498 1.14991 1.23904 1.51728 1.19559 1.00501 0.97442 1.19446 0.89080 1.25835 0.96335 1.03015 1.01501 1.70309 1.06585 1.40103 1.43047 0.84941 0.77909 0.78613 0.77476 1.17973 1.22170 1.22114 1.21109 0.89349 0.93347 0.90181 1.22625 0.91263 0.86791 0.97904 0.91219 0.87878 0.91737 0.91230 0.88418 0.90901 0.86888 0.78928 0.80200 0.89662 0.86478 0.93389 0.84818 0.94860 0.94411 0.94934 1.01057 0.94634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.15 10.38 113.37 1.18 2.32 16 2 O -0.32 -13.27 9.14 -70.57 -0.65 -13.92 16 3 C 0.35 12.35 7.48 85.13 0.64 12.99 16 4 N -0.56 -15.73 9.11 -296.04 -2.70 -18.43 16 5 C 0.18 3.33 6.78 42.58 0.29 3.62 16 6 C -0.10 -1.00 10.16 71.24 0.72 -0.27 16 7 C -0.20 -2.92 9.71 22.32 0.22 -2.70 16 8 C 0.00 -0.06 8.05 22.72 0.18 0.12 16 9 C -0.23 -7.81 5.54 -19.91 -0.11 -7.92 16 10 C 0.57 24.21 7.22 86.69 0.63 24.83 16 11 O -0.57 -31.16 16.19 12.72 0.21 -30.95 16 12 N -0.60 -22.15 2.88 -787.48 -2.27 -24.42 16 13 C 0.09 2.10 5.13 86.88 0.45 2.54 16 14 C -0.11 -2.74 6.24 31.87 0.20 -2.54 16 15 C -0.09 -2.77 3.91 -9.31 -0.04 -2.81 16 16 H 0.14 3.01 8.14 -2.39 -0.02 2.99 16 17 C 0.14 5.40 6.65 86.45 0.58 5.98 16 18 N -0.62 -34.16 3.37 -698.74 -2.36 -36.52 16 19 C -0.24 -14.23 10.25 84.04 0.86 -13.37 16 20 H 0.09 5.02 7.83 -2.91 -0.02 4.99 16 21 C -0.07 -4.58 5.48 84.86 0.47 -4.12 16 22 N -0.95 -63.97 10.17 21.65 0.22 -63.75 16 23 Si 0.98 48.86 29.55 68.60 2.03 50.89 16 24 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 25 H -0.29 -14.67 7.11 99.48 0.71 -13.96 16 26 H -0.29 -14.67 7.11 99.48 0.71 -13.97 16 27 C 0.19 10.55 4.91 86.74 0.43 10.98 16 28 C 0.12 5.00 3.83 46.02 0.18 5.18 16 29 H 0.07 3.08 8.14 -2.39 -0.02 3.07 16 30 H 0.10 2.86 8.14 -2.38 -0.02 2.85 16 31 H 0.06 1.78 8.10 -2.39 -0.02 1.76 16 32 H 0.07 1.84 8.11 -2.39 -0.02 1.82 16 33 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.11 0.39 8.07 -2.39 -0.02 0.37 16 36 H 0.19 0.84 8.06 -2.91 -0.02 0.82 16 37 H 0.18 2.35 5.50 -2.91 -0.02 2.34 16 38 H 0.09 1.76 6.67 -2.39 -0.02 1.74 16 39 H 0.12 1.53 7.18 -2.38 -0.02 1.52 16 40 H 0.05 1.51 7.88 -2.38 -0.02 1.49 16 41 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.04 1.43 7.74 -2.39 -0.02 1.41 16 44 H 0.24 15.93 8.31 -92.71 -0.77 15.16 16 45 H -0.03 -1.83 7.96 -2.39 -0.02 -1.85 16 46 H 0.04 2.42 6.22 -2.39 -0.01 2.41 16 Total: -1.00 -95.90 368.08 2.32 -93.58 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: 0.99 Total: 8.69 kcal Atomic # 6 Polarization: 27.97 SS G_CDS: 6.85 Total: 34.82 kcal Atomic # 7 Polarization: -136.01 SS G_CDS: -7.11 Total: -143.12 kcal Atomic # 8 Polarization: -44.43 SS G_CDS: -0.44 Total: -44.87 kcal Atomic # 14 Polarization: 48.86 SS G_CDS: 2.03 Total: 50.89 kcal Total: -95.90 2.32 -93.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076330697.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.243 kcal (2) G-P(sol) polarization free energy of solvation -95.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds