Wall clock time and date at job start Tue Mar 31 2020 16:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38358 * 119.40462 * 2 1 4 4 C 1.38338 * 119.45759 * 179.72243 * 3 2 1 5 5 C 1.39988 * 118.34750 * 0.49659 * 4 3 2 6 6 C 1.47519 * 120.59707 * 179.77977 * 5 4 3 7 7 O 1.21589 * 120.00299 * 179.71874 * 6 5 4 8 8 N 1.34779 * 119.99969 * 359.72149 * 6 5 4 9 9 C 1.46500 * 120.00219 * 179.97438 * 8 6 5 10 10 H 1.09001 * 112.94850 * 336.41199 * 9 8 6 11 11 C 1.53953 * 113.65866 * 107.81081 * 9 8 6 12 12 C 1.53951 * 87.29074 * 139.21235 * 11 9 8 13 13 H 1.09005 * 113.66800 * 89.73780 * 12 11 9 14 14 N 1.46507 * 113.74820 * 220.78193 * 12 11 9 15 15 C 1.36933 * 119.99850 * 252.22925 * 14 12 11 16 16 H 1.07993 * 120.00245 * 359.97438 * 15 14 12 17 17 C 1.38814 * 119.99652 * 179.97438 * 15 14 12 18 18 N 1.31616 * 120.00275 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99918 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47182 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46992 * 119.99593 * 19 17 15 22 22 H 1.48495 * 109.47056 * 239.99720 * 19 17 15 23 23 C 1.52908 * 86.78683 * 335.26454 * 12 11 9 24 24 C 1.52906 * 121.14322 * 150.62061 * 23 12 11 25 25 C 1.53957 * 86.77902 * 100.81952 * 24 23 12 26 26 C 1.52912 * 121.13762 * 259.18846 * 23 12 11 27 27 C 1.40279 * 118.80616 * 359.50593 * 5 4 3 28 28 O 1.35424 * 119.79943 * 180.22897 * 27 5 4 29 29 N 1.31879 * 119.40916 * 179.97438 * 2 1 3 30 30 H 1.08993 * 109.46959 * 270.01842 * 1 2 3 31 31 H 1.08995 * 109.47261 * 30.02128 * 1 2 3 32 32 H 1.09004 * 109.46408 * 150.02176 * 1 2 3 33 33 H 1.08006 * 120.27065 * 359.97438 * 3 2 1 34 34 H 1.07997 * 120.82372 * 180.25732 * 4 3 2 35 35 H 0.97003 * 120.00273 * 0.02562 * 8 6 5 36 36 H 1.09002 * 113.58246 * 24.61266 * 11 9 8 37 37 H 1.08994 * 113.58138 * 253.81161 * 11 9 8 38 38 H 0.97000 * 119.99588 * 72.22594 * 14 12 11 39 39 H 0.96998 * 120.00657 * 180.02562 * 18 17 15 40 40 H 1.08997 * 113.66080 * 346.35409 * 24 23 12 41 41 H 1.08997 * 113.66819 * 215.29213 * 24 23 12 42 42 H 1.09004 * 113.57788 * 139.34050 * 25 24 23 43 43 H 1.08996 * 113.58263 * 270.12959 * 25 24 23 44 44 H 1.09002 * 113.66342 * 144.69991 * 26 23 12 45 45 H 1.08994 * 113.65844 * 13.64914 * 26 23 12 46 46 H 0.96693 * 114.00257 * 90.00388 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2066 0.0058 5 6 4.2356 -0.0247 0.0009 6 6 5.7097 -0.0813 0.0019 7 8 6.2769 -1.1567 0.0027 8 7 6.4278 1.0593 0.0019 9 6 7.8917 1.0033 0.0034 10 1 8.2808 0.0680 0.4061 11 6 8.5270 1.4098 -1.3387 12 6 9.5930 2.1631 -0.5226 13 1 10.4602 1.5540 -0.2676 14 7 9.9573 3.4650 -1.0873 15 6 11.1757 3.6334 -1.6891 16 1 11.8682 2.8067 -1.7471 17 6 11.5207 4.8667 -2.2246 18 7 10.6766 5.8741 -2.1543 19 14 13.1826 5.0964 -3.0462 20 1 13.9400 3.8200 -2.9964 21 1 12.9835 5.4982 -4.4619 22 1 13.9450 6.1532 -2.3342 23 6 8.5531 2.2485 0.5952 24 6 8.9736 2.2978 2.0645 25 6 8.7256 3.8156 1.9945 26 6 7.7537 3.5297 0.8354 27 6 3.4759 -1.2040 0.0009 28 8 4.0993 -2.4062 0.0008 29 7 2.1547 -1.1488 0.0005 30 1 -0.3633 0.0003 1.0276 31 1 -0.3633 0.8897 -0.5141 32 1 -0.3632 -0.8902 -0.5135 33 1 1.6410 2.1376 -0.0004 34 1 4.1222 2.1346 0.0101 35 1 5.9754 1.9174 0.0016 36 1 7.8953 2.0638 -1.9398 37 1 8.9257 0.5682 -1.9051 38 1 9.3354 4.2075 -1.0348 39 1 10.9175 6.7358 -2.5288 40 1 10.0178 2.0324 2.2297 41 1 8.2908 1.7733 2.7329 42 1 8.2387 4.2193 2.8823 43 1 9.6040 4.3877 1.6960 44 1 6.7280 3.3514 1.1582 45 1 7.8233 4.2482 0.0187 46 1 4.2803 -2.7554 0.8842 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078733582.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:02 Heat of formation + Delta-G solvation = 18.546152 kcal Electronic energy + Delta-G solvation = -28343.996795 eV Core-core repulsion = 24428.803334 eV Total energy + Delta-G solvation = -3915.193461 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.17128 -40.41606 -38.64978 -37.38861 -34.88794 -34.25918 -33.50806 -32.19525 -31.92558 -29.91106 -28.24783 -25.55037 -24.85529 -24.18264 -23.65649 -23.35268 -22.12184 -20.51871 -20.45648 -18.91284 -18.27866 -17.73945 -17.23731 -16.76090 -16.10265 -15.81861 -15.34403 -15.11473 -14.78164 -14.60873 -14.45368 -14.29035 -14.14246 -13.54580 -13.09810 -12.95042 -12.76104 -12.64951 -12.55197 -12.35815 -12.12044 -11.88927 -11.82474 -11.54457 -11.26295 -10.94664 -10.82993 -10.74666 -10.28086 -10.24183 -10.19963 -10.06714 -9.92516 -9.87040 -9.57569 -9.43818 -9.15574 -8.89231 -8.66532 -7.01036 -5.83729 -3.11967 0.28484 0.76563 2.70318 3.07267 3.25977 3.39844 3.46677 3.48087 3.52781 4.16748 4.27748 4.46164 4.54339 4.62646 4.75813 4.89865 4.94056 5.01787 5.04002 5.14881 5.19144 5.20501 5.22565 5.41883 5.51556 5.57417 5.64230 5.65318 5.84836 5.86374 5.94175 5.96362 6.02765 6.08162 6.18372 6.29419 6.36080 6.47329 6.55046 6.58033 6.81979 6.88305 7.02999 7.27741 7.52088 7.59422 7.67078 8.22387 8.35153 9.47110 10.03169 10.38199 11.38638 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.019007 B = 0.002597 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.813556 B =10779.887932 C =10914.703051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.172 3.828 3 C -0.191 4.191 4 C -0.025 4.025 5 C -0.208 4.208 6 C 0.560 3.440 7 O -0.523 6.523 8 N -0.706 5.706 9 C 0.132 3.868 10 H 0.112 0.888 11 C -0.174 4.174 12 C 0.193 3.807 13 H 0.082 0.918 14 N -0.706 5.706 15 C -0.242 4.242 16 H 0.072 0.928 17 C -0.012 4.012 18 N -0.932 5.932 19 Si 0.906 3.094 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.120 4.120 24 C -0.126 4.126 25 C -0.129 4.129 26 C -0.117 4.117 27 C 0.375 3.625 28 O -0.459 6.459 29 N -0.510 5.510 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.146 0.854 34 H 0.144 0.856 35 H 0.396 0.604 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.386 0.614 39 H 0.255 0.745 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.056 0.944 43 H 0.091 0.909 44 H 0.068 0.932 45 H 0.079 0.921 46 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.218 -8.174 9.469 22.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.034 3.966 3 C -0.211 4.211 4 C -0.051 4.051 5 C -0.215 4.215 6 C 0.346 3.654 7 O -0.400 6.400 8 N -0.357 5.357 9 C 0.027 3.973 10 H 0.130 0.870 11 C -0.217 4.217 12 C 0.080 3.920 13 H 0.100 0.900 14 N -0.344 5.344 15 C -0.373 4.373 16 H 0.090 0.910 17 C -0.208 4.208 18 N -0.580 5.580 19 Si 0.737 3.263 20 H -0.205 1.205 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.122 4.122 24 C -0.163 4.163 25 C -0.167 4.167 26 C -0.155 4.155 27 C 0.194 3.806 28 O -0.266 6.266 29 N -0.231 5.231 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.163 0.837 34 H 0.161 0.839 35 H 0.232 0.768 36 H 0.098 0.902 37 H 0.080 0.920 38 H 0.222 0.778 39 H 0.065 0.935 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.109 0.891 44 H 0.087 0.913 45 H 0.098 0.902 46 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -19.005 -9.693 8.787 23.073 hybrid contribution 0.921 1.565 -0.104 1.819 sum -18.084 -8.128 8.682 21.644 Atomic orbital electron populations 1.20833 0.88121 1.04073 1.03579 1.21285 0.97101 0.87229 0.90968 1.21917 0.94478 0.99662 1.05019 1.21769 0.94630 0.97145 0.91598 1.21210 0.95327 0.94373 1.10614 1.17816 0.85742 0.84734 0.77149 1.90802 1.71657 1.28422 1.49166 1.45892 1.07635 1.07930 1.74194 1.22334 0.77231 0.99034 0.98699 0.87021 1.24287 1.00310 1.00784 0.96288 1.21055 0.92459 0.88915 0.89574 0.89988 1.42349 1.18106 1.07203 1.66751 1.19347 0.93083 0.95781 1.29091 0.90982 1.24738 0.98349 0.96002 1.01675 1.69654 1.35511 1.01859 1.51011 0.86130 0.83643 0.77569 0.78931 1.20498 1.21885 1.21876 1.23630 0.98741 0.94099 0.95768 1.22703 1.01150 0.96841 0.95645 1.22726 1.00217 0.96306 0.97423 1.22430 0.96756 0.96827 0.99506 1.19137 0.86021 0.85190 0.90223 1.84725 1.76350 1.31827 1.33715 1.67140 1.09393 1.30446 1.16089 0.89781 0.90051 0.90042 0.83664 0.83880 0.76789 0.90209 0.91990 0.77796 0.93517 0.91414 0.91057 0.92538 0.89057 0.91348 0.90234 0.73543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.59 10.16 36.01 0.37 -0.23 16 2 C 0.17 1.54 6.78 -82.52 -0.56 0.98 16 3 C -0.19 -1.45 9.71 -39.50 -0.38 -1.84 16 4 C -0.03 -0.23 9.64 -38.89 -0.37 -0.60 16 5 C -0.21 -2.51 5.90 -104.69 -0.62 -3.13 16 6 C 0.56 7.97 7.77 -12.48 -0.10 7.87 16 7 O -0.52 -9.09 14.79 -16.48 -0.24 -9.33 16 8 N -0.71 -9.17 5.20 -54.41 -0.28 -9.45 16 9 C 0.13 1.97 4.12 -67.48 -0.28 1.69 16 10 H 0.11 1.76 7.46 -51.93 -0.39 1.37 16 11 C -0.17 -3.04 7.69 -25.75 -0.20 -3.24 16 12 C 0.19 3.65 4.36 -67.48 -0.29 3.35 16 13 H 0.08 1.57 8.10 -51.93 -0.42 1.15 16 14 N -0.71 -16.55 5.33 -52.99 -0.28 -16.84 16 15 C -0.24 -6.45 9.97 -15.06 -0.15 -6.60 16 16 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 17 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 18 N -0.93 -27.08 13.06 55.49 0.72 -26.36 16 19 Si 0.91 21.94 29.55 -169.99 -5.02 16.92 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 23 C -0.12 -1.82 1.06 -154.71 -0.16 -1.99 16 24 C -0.13 -1.76 7.84 -26.28 -0.21 -1.97 16 25 C -0.13 -1.89 8.08 -25.75 -0.21 -2.09 16 26 C -0.12 -1.68 6.78 -26.28 -0.18 -1.86 16 27 C 0.37 4.77 7.77 -16.61 -0.13 4.64 16 28 O -0.46 -5.94 11.66 -39.74 -0.46 -6.40 16 29 N -0.51 -6.01 10.28 -9.21 -0.09 -6.11 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.28 8.07 -51.93 -0.42 -0.14 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.15 0.66 8.06 -52.48 -0.42 0.23 16 34 H 0.14 0.96 6.52 -52.49 -0.34 0.61 16 35 H 0.40 4.31 5.13 -40.82 -0.21 4.10 16 36 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.39 9.50 5.92 -40.82 -0.24 9.25 16 39 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 40 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 44 H 0.07 0.79 7.03 -51.93 -0.36 0.42 16 45 H 0.08 1.33 6.42 -51.93 -0.33 0.99 16 46 H 0.40 3.48 9.06 45.56 0.41 3.90 16 LS Contribution 377.37 15.07 5.69 5.69 Total: -1.00 -33.31 377.37 -9.21 -42.51 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: -5.66 Total: 14.80 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: -3.57 Total: -5.43 kcal Atomic # 7 Polarization: -58.82 SS G_CDS: 0.06 Total: -58.75 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: -0.71 Total: -15.73 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.31 -9.21 -42.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078733582.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.060 kcal (2) G-P(sol) polarization free energy of solvation -33.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds