Wall clock time and date at job start Tue Mar 31 2020 16:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38358 * 119.40462 * 2 1 4 4 C 1.38338 * 119.45759 * 179.72243 * 3 2 1 5 5 C 1.39988 * 118.34750 * 0.49659 * 4 3 2 6 6 C 1.47519 * 120.59707 * 179.77977 * 5 4 3 7 7 O 1.21589 * 120.00299 * 179.71874 * 6 5 4 8 8 N 1.34779 * 119.99969 * 359.72149 * 6 5 4 9 9 C 1.46500 * 120.00219 * 179.97438 * 8 6 5 10 10 H 1.09001 * 112.94850 * 336.41199 * 9 8 6 11 11 C 1.53953 * 113.65866 * 107.81081 * 9 8 6 12 12 C 1.53951 * 87.29074 * 139.21235 * 11 9 8 13 13 H 1.09005 * 113.66800 * 89.73780 * 12 11 9 14 14 N 1.46507 * 113.74820 * 220.78193 * 12 11 9 15 15 C 1.36933 * 119.99850 * 252.22925 * 14 12 11 16 16 H 1.07993 * 120.00245 * 359.97438 * 15 14 12 17 17 C 1.38814 * 119.99652 * 179.97438 * 15 14 12 18 18 N 1.31616 * 120.00275 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99918 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47182 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46992 * 119.99593 * 19 17 15 22 22 H 1.48495 * 109.47056 * 239.99720 * 19 17 15 23 23 C 1.52908 * 86.78683 * 335.26454 * 12 11 9 24 24 C 1.52906 * 121.14322 * 150.62061 * 23 12 11 25 25 C 1.53957 * 86.77902 * 100.81952 * 24 23 12 26 26 C 1.52912 * 121.13762 * 259.18846 * 23 12 11 27 27 C 1.40279 * 118.80616 * 359.50593 * 5 4 3 28 28 O 1.35424 * 119.79943 * 180.22897 * 27 5 4 29 29 N 1.31879 * 119.40916 * 179.97438 * 2 1 3 30 30 H 1.08993 * 109.46959 * 270.01842 * 1 2 3 31 31 H 1.08995 * 109.47261 * 30.02128 * 1 2 3 32 32 H 1.09004 * 109.46408 * 150.02176 * 1 2 3 33 33 H 1.08006 * 120.27065 * 359.97438 * 3 2 1 34 34 H 1.07997 * 120.82372 * 180.25732 * 4 3 2 35 35 H 0.97003 * 120.00273 * 0.02562 * 8 6 5 36 36 H 1.09002 * 113.58246 * 24.61266 * 11 9 8 37 37 H 1.08994 * 113.58138 * 253.81161 * 11 9 8 38 38 H 0.97000 * 119.99588 * 72.22594 * 14 12 11 39 39 H 0.96998 * 120.00657 * 180.02562 * 18 17 15 40 40 H 1.08997 * 113.66080 * 346.35409 * 24 23 12 41 41 H 1.08997 * 113.66819 * 215.29213 * 24 23 12 42 42 H 1.09004 * 113.57788 * 139.34050 * 25 24 23 43 43 H 1.08996 * 113.58263 * 270.12959 * 25 24 23 44 44 H 1.09002 * 113.66342 * 144.69991 * 26 23 12 45 45 H 1.08994 * 113.65844 * 13.64914 * 26 23 12 46 46 H 0.96693 * 114.00257 * 90.00388 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2066 0.0058 5 6 4.2356 -0.0247 0.0009 6 6 5.7097 -0.0813 0.0019 7 8 6.2769 -1.1567 0.0027 8 7 6.4278 1.0593 0.0019 9 6 7.8917 1.0033 0.0034 10 1 8.2808 0.0680 0.4061 11 6 8.5270 1.4098 -1.3387 12 6 9.5930 2.1631 -0.5226 13 1 10.4602 1.5540 -0.2676 14 7 9.9573 3.4650 -1.0873 15 6 11.1757 3.6334 -1.6891 16 1 11.8682 2.8067 -1.7471 17 6 11.5207 4.8667 -2.2246 18 7 10.6766 5.8741 -2.1543 19 14 13.1826 5.0964 -3.0462 20 1 13.9400 3.8200 -2.9964 21 1 12.9835 5.4982 -4.4619 22 1 13.9450 6.1532 -2.3342 23 6 8.5531 2.2485 0.5952 24 6 8.9736 2.2978 2.0645 25 6 8.7256 3.8156 1.9945 26 6 7.7537 3.5297 0.8354 27 6 3.4759 -1.2040 0.0009 28 8 4.0993 -2.4062 0.0008 29 7 2.1547 -1.1488 0.0005 30 1 -0.3633 0.0003 1.0276 31 1 -0.3633 0.8897 -0.5141 32 1 -0.3632 -0.8902 -0.5135 33 1 1.6410 2.1376 -0.0004 34 1 4.1222 2.1346 0.0101 35 1 5.9754 1.9174 0.0016 36 1 7.8953 2.0638 -1.9398 37 1 8.9257 0.5682 -1.9051 38 1 9.3354 4.2075 -1.0348 39 1 10.9175 6.7358 -2.5288 40 1 10.0178 2.0324 2.2297 41 1 8.2908 1.7733 2.7329 42 1 8.2387 4.2193 2.8823 43 1 9.6040 4.3877 1.6960 44 1 6.7280 3.3514 1.1582 45 1 7.8233 4.2482 0.0187 46 1 4.2803 -2.7554 0.8842 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078733582.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:01 Heat of formation + Delta-G solvation = -5.853276 kcal Electronic energy + Delta-G solvation = -28345.054833 eV Core-core repulsion = 24428.803334 eV Total energy + Delta-G solvation = -3916.251500 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.15247 -41.53073 -39.74328 -38.24373 -36.26967 -35.75631 -34.62790 -33.49852 -32.60965 -31.69056 -28.96164 -26.80525 -26.41942 -25.54175 -24.77179 -24.10553 -23.40051 -21.81383 -21.59054 -19.81823 -19.62526 -19.16237 -18.32560 -17.99133 -17.17822 -16.87788 -16.41923 -16.38517 -16.24263 -15.75363 -15.69296 -15.34922 -14.89017 -14.81484 -14.52901 -14.10382 -13.82836 -13.61094 -13.50360 -13.18960 -13.13536 -13.10055 -12.97597 -12.89435 -12.74997 -12.62780 -12.29758 -12.24397 -12.02608 -11.85954 -11.37744 -11.29640 -11.07523 -11.02317 -10.98468 -10.72887 -10.45664 -10.01471 -9.76219 -8.94953 -7.94300 -5.20733 -0.49872 0.06538 1.46775 1.48048 1.57042 1.76433 2.03519 2.46544 2.56711 2.71376 3.36678 3.45033 3.49141 3.61067 3.66185 3.69068 3.78070 3.93678 3.94303 4.02329 4.12677 4.24721 4.30556 4.42724 4.55498 4.66015 4.67288 4.74481 4.78269 4.81388 4.86109 4.90405 5.02134 5.04190 5.09742 5.14227 5.15061 5.21650 5.31680 5.48664 5.51552 5.52408 5.63953 5.69677 6.28661 6.46754 6.55825 6.82288 7.16179 7.36312 8.11766 8.36937 9.28753 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.019007 B = 0.002597 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.813556 B =10779.887932 C =10914.703051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.166 3.834 3 C -0.179 4.179 4 C -0.021 4.021 5 C -0.228 4.228 6 C 0.561 3.439 7 O -0.562 6.562 8 N -0.695 5.695 9 C 0.151 3.849 10 H 0.107 0.893 11 C -0.171 4.171 12 C 0.175 3.825 13 H 0.075 0.925 14 N -0.715 5.715 15 C -0.240 4.240 16 H 0.072 0.928 17 C -0.071 4.071 18 N -0.965 5.965 19 Si 0.965 3.035 20 H -0.270 1.270 21 H -0.296 1.296 22 H -0.294 1.294 23 C -0.110 4.110 24 C -0.116 4.116 25 C -0.129 4.129 26 C -0.110 4.110 27 C 0.355 3.645 28 O -0.481 6.481 29 N -0.536 5.536 30 H 0.099 0.901 31 H 0.108 0.892 32 H 0.072 0.928 33 H 0.186 0.814 34 H 0.169 0.831 35 H 0.409 0.591 36 H 0.070 0.930 37 H 0.053 0.947 38 H 0.380 0.620 39 H 0.250 0.750 40 H 0.059 0.941 41 H 0.098 0.902 42 H 0.083 0.917 43 H 0.054 0.946 44 H 0.108 0.892 45 H 0.053 0.947 46 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.463 -7.602 10.635 25.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.028 3.972 3 C -0.198 4.198 4 C -0.047 4.047 5 C -0.235 4.235 6 C 0.349 3.651 7 O -0.442 6.442 8 N -0.346 5.346 9 C 0.045 3.955 10 H 0.125 0.875 11 C -0.213 4.213 12 C 0.064 3.936 13 H 0.093 0.907 14 N -0.353 5.353 15 C -0.372 4.372 16 H 0.090 0.910 17 C -0.263 4.263 18 N -0.615 5.615 19 Si 0.796 3.204 20 H -0.194 1.194 21 H -0.223 1.223 22 H -0.221 1.221 23 C -0.113 4.113 24 C -0.154 4.154 25 C -0.167 4.167 26 C -0.148 4.148 27 C 0.175 3.825 28 O -0.290 6.290 29 N -0.257 5.257 30 H 0.118 0.882 31 H 0.126 0.874 32 H 0.091 0.909 33 H 0.203 0.797 34 H 0.186 0.814 35 H 0.247 0.753 36 H 0.089 0.911 37 H 0.072 0.928 38 H 0.214 0.786 39 H 0.059 0.941 40 H 0.078 0.922 41 H 0.116 0.884 42 H 0.102 0.898 43 H 0.073 0.927 44 H 0.126 0.874 45 H 0.072 0.928 46 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -21.272 -9.150 9.978 25.215 hybrid contribution 1.504 1.324 -0.450 2.053 sum -19.769 -7.826 9.528 23.299 Atomic orbital electron populations 1.20968 0.85657 1.04998 1.04809 1.22014 0.98772 0.87029 0.89390 1.22351 0.93979 1.00717 1.02785 1.22101 0.95498 0.96738 0.90329 1.21037 0.93744 0.95581 1.13160 1.18159 0.86770 0.84164 0.76042 1.90780 1.72624 1.29800 1.50950 1.45685 1.06568 1.08471 1.73866 1.21948 0.78514 0.98580 0.96416 0.87520 1.24143 0.99909 1.00019 0.97264 1.21295 0.93439 0.87158 0.91711 0.90714 1.42425 1.17122 1.08648 1.67123 1.19673 0.94036 0.95573 1.27910 0.90990 1.25431 1.01505 0.96075 1.03295 1.69784 1.37099 1.02033 1.52631 0.85185 0.80221 0.77559 0.77482 1.19433 1.22331 1.22076 1.23376 0.97417 0.94813 0.95655 1.22710 1.01405 0.96572 0.94695 1.22633 0.99133 0.96346 0.98544 1.22482 0.98668 0.95123 0.98517 1.19331 0.86644 0.85196 0.91297 1.84669 1.76703 1.32566 1.35090 1.67183 1.09004 1.32221 1.17246 0.88219 0.87363 0.90885 0.79674 0.81353 0.75276 0.91088 0.92832 0.78599 0.94064 0.92178 0.88403 0.89827 0.92711 0.87430 0.92800 0.72252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 10.16 71.24 0.72 -0.09 16 2 C 0.17 2.50 6.78 42.58 0.29 2.79 16 3 C -0.18 -2.00 9.71 22.32 0.22 -1.79 16 4 C -0.02 -0.31 9.64 22.72 0.22 -0.09 16 5 C -0.23 -5.18 5.90 -19.91 -0.12 -5.30 16 6 C 0.56 15.44 7.77 86.69 0.67 16.11 16 7 O -0.56 -19.61 14.79 16.82 0.25 -19.36 16 8 N -0.69 -16.76 5.20 -444.32 -2.31 -19.07 16 9 C 0.15 4.37 4.12 45.28 0.19 4.55 16 10 H 0.11 3.29 7.46 -2.39 -0.02 3.27 16 11 C -0.17 -6.00 7.69 31.23 0.24 -5.76 16 12 C 0.17 6.68 4.36 45.28 0.20 6.88 16 13 H 0.07 2.93 8.10 -2.38 -0.02 2.91 16 14 N -0.71 -34.26 5.33 -321.55 -1.71 -35.97 16 15 C -0.24 -13.01 9.97 84.03 0.84 -12.17 16 16 H 0.07 3.82 7.83 -2.91 -0.02 3.79 16 17 C -0.07 -3.96 5.50 84.86 0.47 -3.50 16 18 N -0.96 -57.22 13.06 21.65 0.28 -56.94 16 19 Si 0.97 45.77 29.55 68.60 2.03 47.80 16 20 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 21 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 22 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 23 C -0.11 -3.23 1.06 -52.31 -0.06 -3.29 16 24 C -0.12 -3.03 7.84 30.89 0.24 -2.78 16 25 C -0.13 -3.55 8.08 31.23 0.25 -3.30 16 26 C -0.11 -2.94 6.78 30.88 0.21 -2.73 16 27 C 0.35 8.92 7.77 85.13 0.66 9.58 16 28 O -0.48 -12.85 11.66 -66.38 -0.77 -13.63 16 29 N -0.54 -12.08 10.28 -296.05 -3.04 -15.13 16 30 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.11 0.26 8.07 -2.39 -0.02 0.24 16 32 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.19 0.57 8.06 -2.91 -0.02 0.55 16 34 H 0.17 1.50 6.52 -2.91 -0.02 1.48 16 35 H 0.41 7.65 5.13 -92.71 -0.48 7.18 16 36 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.38 19.14 5.92 -92.71 -0.55 18.59 16 39 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 40 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.11 2.03 7.03 -2.39 -0.02 2.01 16 45 H 0.05 1.76 6.42 -2.39 -0.02 1.74 16 46 H 0.42 7.67 9.06 -74.06 -0.67 7.00 16 Total: -1.00 -74.93 377.37 -0.70 -75.63 By element: Atomic # 1 Polarization: 38.20 SS G_CDS: -0.66 Total: 37.55 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: 5.24 Total: -0.88 kcal Atomic # 7 Polarization: -120.33 SS G_CDS: -6.79 Total: -127.11 kcal Atomic # 8 Polarization: -32.46 SS G_CDS: -0.52 Total: -32.98 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -74.93 -0.70 -75.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078733582.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.777 kcal (2) G-P(sol) polarization free energy of solvation -74.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds