Wall clock time and date at job start Tue Mar 31 2020 16:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38356 * 119.40966 * 2 1 4 4 C 1.38339 * 119.46011 * 179.75969 * 3 2 1 5 5 C 1.39987 * 118.34506 * 0.47899 * 4 3 2 6 6 C 1.47527 * 120.59626 * 179.75633 * 5 4 3 7 7 O 1.21587 * 119.99894 * 179.71733 * 6 5 4 8 8 N 1.34771 * 119.99820 * 359.71800 * 6 5 4 9 9 C 1.46507 * 120.00138 * 180.02562 * 8 6 5 10 10 H 1.09004 * 112.88064 * 336.34110 * 9 8 6 11 11 C 1.54241 * 113.75079 * 107.77207 * 9 8 6 12 12 C 1.53955 * 87.18863 * 139.21780 * 11 9 8 13 13 H 1.08997 * 113.66205 * 220.75128 * 12 11 9 14 14 N 1.46498 * 113.66415 * 89.78569 * 12 11 9 15 15 C 1.36943 * 119.99752 * 105.73736 * 14 12 11 16 16 H 1.08002 * 119.99793 * 0.27665 * 15 14 12 17 17 C 1.38811 * 120.00012 * 180.27737 * 15 14 12 18 18 N 1.31611 * 120.00081 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99814 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47483 * 90.00178 * 19 17 15 21 21 H 1.48498 * 109.47011 * 210.00042 * 19 17 15 22 22 H 1.48502 * 109.47495 * 329.99664 * 19 17 15 23 23 C 1.52905 * 86.88352 * 335.26925 * 12 11 9 24 24 C 1.52914 * 121.14057 * 259.22722 * 23 12 11 25 25 C 1.53950 * 86.78444 * 209.37767 * 24 23 12 26 26 C 1.52911 * 121.13968 * 150.66362 * 23 12 11 27 27 C 1.40283 * 118.80884 * 359.47733 * 5 4 3 28 28 O 1.35426 * 119.80220 * 180.27793 * 27 5 4 29 29 N 1.31880 * 119.40571 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.47692 * 270.03103 * 1 2 3 31 31 H 1.09010 * 109.46631 * 30.02600 * 1 2 3 32 32 H 1.09000 * 109.47278 * 150.01966 * 1 2 3 33 33 H 1.08005 * 120.26951 * 359.97438 * 3 2 1 34 34 H 1.07999 * 120.83029 * 180.23243 * 4 3 2 35 35 H 0.97000 * 120.00377 * 0.02562 * 8 6 5 36 36 H 1.09004 * 113.58278 * 24.66765 * 11 9 8 37 37 H 1.08994 * 113.67408 * 253.78326 * 11 9 8 38 38 H 0.97001 * 120.00384 * 286.02091 * 14 12 11 39 39 H 0.97008 * 120.00329 * 179.97438 * 18 17 15 40 40 H 1.09000 * 113.66024 * 323.85226 * 24 23 12 41 41 H 1.08994 * 113.66194 * 94.90621 * 24 23 12 42 42 H 1.08995 * 113.58271 * 270.13143 * 25 24 23 43 43 H 1.08996 * 113.57661 * 139.32983 * 25 24 23 44 44 H 1.09005 * 113.65882 * 265.09435 * 26 23 12 45 45 H 1.08996 * 113.66010 * 36.14620 * 26 23 12 46 46 H 0.96693 * 114.00026 * 89.99959 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2065 0.0051 5 6 4.2355 -0.0249 -0.0003 6 6 5.7097 -0.0816 -0.0007 7 8 6.2767 -1.1571 -0.0001 8 7 6.4278 1.0589 -0.0016 9 6 7.8918 1.0028 -0.0025 10 1 8.2803 0.0675 0.4006 11 6 8.5282 1.4090 -1.3475 12 6 9.5936 2.1613 -0.5296 13 1 9.8652 3.1294 -0.9503 14 7 10.7588 1.3420 -0.1869 15 6 11.9470 1.5345 -0.8399 16 1 12.0263 2.2933 -1.6044 17 6 13.0494 0.7543 -0.5194 18 7 14.1915 0.9395 -1.1466 19 14 12.9119 -0.5586 0.8023 20 1 12.4950 -1.8425 0.1833 21 1 14.2292 -0.7335 1.4653 22 1 11.9023 -0.1437 1.8092 23 6 8.5541 2.2478 0.5884 24 6 7.7557 3.5297 0.8283 25 6 7.6916 3.1098 2.3081 26 6 8.9752 2.2975 2.0576 27 6 3.4757 -1.2042 0.0007 28 8 4.0990 -2.4065 0.0013 29 7 2.1545 -1.1489 0.0005 30 1 -0.3634 0.0006 1.0276 31 1 -0.3633 0.8899 -0.5143 32 1 -0.3634 -0.8901 -0.5135 33 1 1.6411 2.1376 -0.0004 34 1 4.1224 2.1343 0.0089 35 1 5.9754 1.9170 -0.0016 36 1 7.8971 2.0639 -1.9484 37 1 8.9273 0.5681 -1.9146 38 1 10.6875 0.6604 0.4995 39 1 14.9621 0.3946 -0.9223 40 1 8.3289 4.4407 0.6565 41 1 6.7844 3.5391 0.3339 42 1 6.8257 2.4934 2.5494 43 1 7.8287 3.9385 3.0027 44 1 8.9781 1.3226 2.5450 45 1 9.8912 2.8622 2.2312 46 1 4.2803 -2.7550 0.8849 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078733584.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:10 Heat of formation + Delta-G solvation = 24.212530 kcal Electronic energy + Delta-G solvation = -28561.182578 eV Core-core repulsion = 24646.234829 eV Total energy + Delta-G solvation = -3914.947748 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.25782 -40.57254 -38.68087 -37.41698 -35.26793 -34.34480 -33.44438 -32.22838 -31.97823 -30.23114 -28.33643 -25.74067 -24.98012 -24.33244 -23.58097 -23.35004 -22.41454 -20.67733 -20.23489 -19.07866 -18.63172 -17.85501 -17.27040 -16.93712 -16.14009 -15.80147 -15.47957 -15.26342 -14.88566 -14.82403 -14.46918 -14.24683 -14.15748 -13.58316 -13.11701 -12.94982 -12.85614 -12.68552 -12.54199 -12.48178 -12.27867 -12.09119 -12.06957 -11.84940 -11.74221 -11.12709 -10.93395 -10.81730 -10.34084 -10.30803 -10.26723 -10.15648 -9.98968 -9.74841 -9.62555 -9.47648 -9.20562 -8.88961 -8.77938 -7.30161 -5.79888 -3.16205 0.23297 0.70483 2.65766 3.00721 3.21413 3.37891 3.41973 3.46623 3.47594 4.11236 4.19832 4.39476 4.53049 4.55268 4.57582 4.61589 4.77444 4.87897 4.95456 4.96868 5.09610 5.13464 5.16330 5.31759 5.44869 5.49746 5.51960 5.53176 5.58476 5.66414 5.77731 5.84885 5.89112 5.93823 6.02579 6.08006 6.18941 6.28329 6.46366 6.54230 6.57125 6.67631 6.89881 7.24285 7.46314 7.53702 7.96719 8.18186 8.39451 9.17073 9.89538 10.08224 11.37973 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.018511 B = 0.002986 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.259415 B = 9373.649030 C =10150.103753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.173 3.827 3 C -0.192 4.192 4 C -0.026 4.026 5 C -0.208 4.208 6 C 0.558 3.442 7 O -0.517 6.517 8 N -0.711 5.711 9 C 0.151 3.849 10 H 0.114 0.886 11 C -0.181 4.181 12 C 0.192 3.808 13 H 0.076 0.924 14 N -0.725 5.725 15 C -0.247 4.247 16 H 0.092 0.908 17 C 0.008 3.992 18 N -0.931 5.931 19 Si 0.880 3.120 20 H -0.282 1.282 21 H -0.290 1.290 22 H -0.276 1.276 23 C -0.131 4.131 24 C -0.107 4.107 25 C -0.141 4.141 26 C -0.118 4.118 27 C 0.376 3.624 28 O -0.458 6.458 29 N -0.510 5.510 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.394 0.606 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.363 0.637 39 H 0.260 0.740 40 H 0.089 0.911 41 H 0.058 0.942 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.090 0.910 46 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.327 4.982 6.383 29.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.035 3.965 3 C -0.212 4.212 4 C -0.052 4.052 5 C -0.215 4.215 6 C 0.344 3.656 7 O -0.393 6.393 8 N -0.362 5.362 9 C 0.047 3.953 10 H 0.132 0.868 11 C -0.223 4.223 12 C 0.080 3.920 13 H 0.094 0.906 14 N -0.365 5.365 15 C -0.376 4.376 16 H 0.110 0.890 17 C -0.188 4.188 18 N -0.578 5.578 19 Si 0.710 3.290 20 H -0.209 1.209 21 H -0.217 1.217 22 H -0.202 1.202 23 C -0.133 4.133 24 C -0.145 4.145 25 C -0.178 4.178 26 C -0.156 4.156 27 C 0.196 3.804 28 O -0.266 6.266 29 N -0.230 5.230 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.163 0.837 34 H 0.160 0.840 35 H 0.230 0.770 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.197 0.803 39 H 0.070 0.930 40 H 0.108 0.892 41 H 0.076 0.924 42 H 0.091 0.909 43 H 0.083 0.917 44 H 0.080 0.920 45 H 0.108 0.892 46 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -28.075 3.494 5.644 28.849 hybrid contribution 0.311 0.031 1.311 1.348 sum -27.765 3.526 6.955 28.839 Atomic orbital electron populations 1.20836 0.88115 1.04076 1.03605 1.21290 0.97115 0.87231 0.90904 1.21898 0.94446 0.99630 1.05217 1.21722 0.94580 0.97010 0.91890 1.21218 0.95289 0.94398 1.10599 1.17842 0.85755 0.84786 0.77252 1.90842 1.71595 1.28375 1.48475 1.45983 1.07686 1.07858 1.74699 1.22393 0.76698 0.98271 0.97928 0.86827 1.24337 0.99620 1.02038 0.96323 1.20720 0.85257 0.94459 0.91593 0.90585 1.42438 1.07722 1.41415 1.44898 1.19067 0.86067 1.16781 1.15726 0.89011 1.24651 0.95585 0.99280 0.99250 1.69692 1.01208 1.42650 1.44252 0.86614 0.76880 0.82966 0.82511 1.20883 1.21674 1.20185 1.23530 0.98363 0.94958 0.96471 1.22508 0.99002 0.96939 0.96091 1.22859 0.98683 0.99868 0.96391 1.22602 0.97569 1.00309 0.95116 1.19163 0.86013 0.85262 0.90000 1.84729 1.76310 1.31773 1.33783 1.67154 1.09404 1.30438 1.16004 0.89760 0.90073 0.90008 0.83717 0.84030 0.76979 0.90828 0.90544 0.80345 0.92972 0.89223 0.92373 0.90905 0.91716 0.91967 0.89192 0.73406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.54 10.16 36.00 0.37 -0.17 16 2 C 0.17 1.45 6.78 -82.53 -0.56 0.89 16 3 C -0.19 -1.29 9.71 -39.50 -0.38 -1.68 16 4 C -0.03 -0.21 9.64 -38.89 -0.37 -0.58 16 5 C -0.21 -2.42 5.90 -104.69 -0.62 -3.03 16 6 C 0.56 7.91 7.77 -12.48 -0.10 7.82 16 7 O -0.52 -9.38 14.79 -16.48 -0.24 -9.62 16 8 N -0.71 -8.75 5.24 -54.26 -0.28 -9.03 16 9 C 0.15 2.31 4.05 -67.32 -0.27 2.04 16 10 H 0.11 2.07 7.46 -51.93 -0.39 1.69 16 11 C -0.18 -3.02 7.71 -25.59 -0.20 -3.22 16 12 C 0.19 3.50 4.35 -67.48 -0.29 3.21 16 13 H 0.08 1.40 8.11 -51.93 -0.42 0.98 16 14 N -0.73 -16.66 4.91 -52.99 -0.26 -16.92 16 15 C -0.25 -6.82 10.46 -15.06 -0.16 -6.97 16 16 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 17 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 18 N -0.93 -29.06 13.97 55.49 0.78 -28.29 16 19 Si 0.88 22.23 27.74 -169.99 -4.71 17.52 16 20 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 21 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 22 H -0.28 -6.53 6.52 56.52 0.37 -6.16 16 23 C -0.13 -1.87 0.91 -154.71 -0.14 -2.01 16 24 C -0.11 -1.16 7.47 -26.28 -0.20 -1.35 16 25 C -0.14 -1.51 8.08 -25.75 -0.21 -1.72 16 26 C -0.12 -1.69 7.46 -26.28 -0.20 -1.88 16 27 C 0.38 4.74 7.77 -16.61 -0.13 4.61 16 28 O -0.46 -6.08 11.66 -39.74 -0.46 -6.55 16 29 N -0.51 -5.87 10.28 -9.21 -0.09 -5.96 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.23 8.07 -51.92 -0.42 -0.19 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.15 0.50 8.06 -52.48 -0.42 0.08 16 34 H 0.14 0.73 6.51 -52.49 -0.34 0.39 16 35 H 0.39 3.63 4.83 -40.82 -0.20 3.44 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 38 H 0.36 8.39 5.64 -40.82 -0.23 8.16 16 39 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 40 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.06 0.49 6.42 -51.93 -0.33 0.16 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 46 H 0.41 3.70 9.06 45.56 0.41 4.12 16 LS Contribution 376.83 15.07 5.68 5.68 Total: -1.00 -35.50 376.83 -8.90 -44.40 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -5.74 Total: 12.70 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -3.55 Total: -3.91 kcal Atomic # 7 Polarization: -60.34 SS G_CDS: 0.14 Total: -60.20 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -0.71 Total: -16.17 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.71 Total: 17.52 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.50 -8.90 -44.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078733584.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.608 kcal (2) G-P(sol) polarization free energy of solvation -35.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds