Wall clock time and date at job start Tue Mar 31 2020 16:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38356 * 119.40966 * 2 1 4 4 C 1.38339 * 119.46011 * 179.75969 * 3 2 1 5 5 C 1.39987 * 118.34506 * 0.47899 * 4 3 2 6 6 C 1.47527 * 120.59626 * 179.75633 * 5 4 3 7 7 O 1.21587 * 119.99894 * 179.71733 * 6 5 4 8 8 N 1.34771 * 119.99820 * 359.71800 * 6 5 4 9 9 C 1.46507 * 120.00138 * 180.02562 * 8 6 5 10 10 H 1.09004 * 112.88064 * 336.34110 * 9 8 6 11 11 C 1.54241 * 113.75079 * 107.77207 * 9 8 6 12 12 C 1.53955 * 87.18863 * 139.21780 * 11 9 8 13 13 H 1.08997 * 113.66205 * 220.75128 * 12 11 9 14 14 N 1.46498 * 113.66415 * 89.78569 * 12 11 9 15 15 C 1.36943 * 119.99752 * 105.73736 * 14 12 11 16 16 H 1.08002 * 119.99793 * 0.27665 * 15 14 12 17 17 C 1.38811 * 120.00012 * 180.27737 * 15 14 12 18 18 N 1.31611 * 120.00081 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99814 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47483 * 90.00178 * 19 17 15 21 21 H 1.48498 * 109.47011 * 210.00042 * 19 17 15 22 22 H 1.48502 * 109.47495 * 329.99664 * 19 17 15 23 23 C 1.52905 * 86.88352 * 335.26925 * 12 11 9 24 24 C 1.52914 * 121.14057 * 259.22722 * 23 12 11 25 25 C 1.53950 * 86.78444 * 209.37767 * 24 23 12 26 26 C 1.52911 * 121.13968 * 150.66362 * 23 12 11 27 27 C 1.40283 * 118.80884 * 359.47733 * 5 4 3 28 28 O 1.35426 * 119.80220 * 180.27793 * 27 5 4 29 29 N 1.31880 * 119.40571 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.47692 * 270.03103 * 1 2 3 31 31 H 1.09010 * 109.46631 * 30.02600 * 1 2 3 32 32 H 1.09000 * 109.47278 * 150.01966 * 1 2 3 33 33 H 1.08005 * 120.26951 * 359.97438 * 3 2 1 34 34 H 1.07999 * 120.83029 * 180.23243 * 4 3 2 35 35 H 0.97000 * 120.00377 * 0.02562 * 8 6 5 36 36 H 1.09004 * 113.58278 * 24.66765 * 11 9 8 37 37 H 1.08994 * 113.67408 * 253.78326 * 11 9 8 38 38 H 0.97001 * 120.00384 * 286.02091 * 14 12 11 39 39 H 0.97008 * 120.00329 * 179.97438 * 18 17 15 40 40 H 1.09000 * 113.66024 * 323.85226 * 24 23 12 41 41 H 1.08994 * 113.66194 * 94.90621 * 24 23 12 42 42 H 1.08995 * 113.58271 * 270.13143 * 25 24 23 43 43 H 1.08996 * 113.57661 * 139.32983 * 25 24 23 44 44 H 1.09005 * 113.65882 * 265.09435 * 26 23 12 45 45 H 1.08996 * 113.66010 * 36.14620 * 26 23 12 46 46 H 0.96693 * 114.00026 * 89.99959 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2065 0.0051 5 6 4.2355 -0.0249 -0.0003 6 6 5.7097 -0.0816 -0.0007 7 8 6.2767 -1.1571 -0.0001 8 7 6.4278 1.0589 -0.0016 9 6 7.8918 1.0028 -0.0025 10 1 8.2803 0.0675 0.4006 11 6 8.5282 1.4090 -1.3475 12 6 9.5936 2.1613 -0.5296 13 1 9.8652 3.1294 -0.9503 14 7 10.7588 1.3420 -0.1869 15 6 11.9470 1.5345 -0.8399 16 1 12.0263 2.2933 -1.6044 17 6 13.0494 0.7543 -0.5194 18 7 14.1915 0.9395 -1.1466 19 14 12.9119 -0.5586 0.8023 20 1 12.4950 -1.8425 0.1833 21 1 14.2292 -0.7335 1.4653 22 1 11.9023 -0.1437 1.8092 23 6 8.5541 2.2478 0.5884 24 6 7.7557 3.5297 0.8283 25 6 7.6916 3.1098 2.3081 26 6 8.9752 2.2975 2.0576 27 6 3.4757 -1.2042 0.0007 28 8 4.0990 -2.4065 0.0013 29 7 2.1545 -1.1489 0.0005 30 1 -0.3634 0.0006 1.0276 31 1 -0.3633 0.8899 -0.5143 32 1 -0.3634 -0.8901 -0.5135 33 1 1.6411 2.1376 -0.0004 34 1 4.1224 2.1343 0.0089 35 1 5.9754 1.9170 -0.0016 36 1 7.8971 2.0639 -1.9484 37 1 8.9273 0.5681 -1.9146 38 1 10.6875 0.6604 0.4995 39 1 14.9621 0.3946 -0.9223 40 1 8.3289 4.4407 0.6565 41 1 6.7844 3.5391 0.3339 42 1 6.8257 2.4934 2.5494 43 1 7.8287 3.9385 3.0027 44 1 8.9781 1.3226 2.5450 45 1 9.8912 2.8622 2.2312 46 1 4.2803 -2.7550 0.8849 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078733584.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:09 Heat of formation + Delta-G solvation = -3.519709 kcal Electronic energy + Delta-G solvation = -28562.385138 eV Core-core repulsion = 24646.234829 eV Total energy + Delta-G solvation = -3916.150309 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.22912 -41.56935 -39.74360 -38.26219 -36.68455 -35.63619 -34.61760 -33.64750 -32.61779 -32.05189 -29.00193 -26.78637 -26.43912 -25.45691 -24.78803 -24.14662 -23.68050 -21.74738 -21.49353 -20.21454 -19.78801 -19.37933 -18.27961 -17.95988 -17.12386 -16.85059 -16.69138 -16.38799 -16.33855 -15.77845 -15.62504 -15.35188 -14.84105 -14.78927 -14.61601 -14.25867 -14.00417 -13.76464 -13.60607 -13.41358 -13.17872 -13.12365 -13.06740 -12.96960 -12.88591 -12.64640 -12.50044 -12.30278 -11.89227 -11.86670 -11.43168 -11.33560 -11.13079 -11.02689 -11.00445 -10.72535 -10.46565 -10.06688 -9.79087 -9.29536 -8.05707 -5.37790 -0.50507 0.07027 1.32555 1.36424 1.41403 1.75065 1.99829 2.43711 2.45435 2.70946 3.24785 3.27533 3.37819 3.45379 3.66131 3.68045 3.73661 3.88576 3.93544 3.95423 4.04505 4.15277 4.28636 4.41772 4.51908 4.59620 4.67136 4.73584 4.81126 4.84007 4.90004 4.94645 4.98456 5.03978 5.05103 5.12256 5.15005 5.19139 5.23086 5.33991 5.51002 5.55277 5.66510 5.76766 6.19969 6.44616 6.53676 6.82211 7.04641 7.17011 7.82305 7.98917 9.15627 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.018511 B = 0.002986 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.259415 B = 9373.649030 C =10150.103753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.164 3.836 3 C -0.176 4.176 4 C -0.017 4.017 5 C -0.227 4.227 6 C 0.557 3.443 7 O -0.568 6.568 8 N -0.691 5.691 9 C 0.160 3.840 10 H 0.079 0.921 11 C -0.174 4.174 12 C 0.170 3.830 13 H 0.074 0.926 14 N -0.732 5.732 15 C -0.225 4.225 16 H 0.065 0.935 17 C -0.059 4.059 18 N -0.980 5.980 19 Si 0.942 3.058 20 H -0.288 1.288 21 H -0.292 1.292 22 H -0.254 1.254 23 C -0.118 4.118 24 C -0.094 4.094 25 C -0.122 4.122 26 C -0.134 4.134 27 C 0.350 3.650 28 O -0.484 6.484 29 N -0.538 5.538 30 H 0.098 0.902 31 H 0.111 0.889 32 H 0.070 0.930 33 H 0.191 0.809 34 H 0.178 0.822 35 H 0.414 0.586 36 H 0.105 0.895 37 H 0.040 0.960 38 H 0.363 0.637 39 H 0.257 0.743 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.047 0.953 45 H 0.075 0.925 46 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.672 7.873 7.735 34.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.026 3.974 3 C -0.195 4.195 4 C -0.042 4.042 5 C -0.234 4.234 6 C 0.345 3.655 7 O -0.448 6.448 8 N -0.344 5.344 9 C 0.055 3.945 10 H 0.097 0.903 11 C -0.216 4.216 12 C 0.060 3.940 13 H 0.092 0.908 14 N -0.372 5.372 15 C -0.355 4.355 16 H 0.083 0.917 17 C -0.250 4.250 18 N -0.631 5.631 19 Si 0.771 3.229 20 H -0.215 1.215 21 H -0.219 1.219 22 H -0.178 1.178 23 C -0.120 4.120 24 C -0.132 4.132 25 C -0.159 4.159 26 C -0.172 4.172 27 C 0.171 3.829 28 O -0.294 6.294 29 N -0.259 5.259 30 H 0.117 0.883 31 H 0.129 0.871 32 H 0.089 0.911 33 H 0.208 0.792 34 H 0.195 0.805 35 H 0.254 0.746 36 H 0.123 0.877 37 H 0.059 0.941 38 H 0.196 0.804 39 H 0.066 0.934 40 H 0.115 0.885 41 H 0.111 0.889 42 H 0.104 0.896 43 H 0.101 0.899 44 H 0.066 0.934 45 H 0.093 0.907 46 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -32.515 6.448 7.015 33.883 hybrid contribution 1.507 -0.793 0.811 1.886 sum -31.009 5.655 7.826 32.477 Atomic orbital electron populations 1.20974 0.85725 1.05020 1.04762 1.22051 0.98773 0.87141 0.89419 1.22379 0.93985 1.00633 1.02522 1.22128 0.95395 0.96565 0.90123 1.21011 0.93355 0.95781 1.13275 1.18289 0.86995 0.84234 0.76019 1.90819 1.72816 1.30312 1.50834 1.45663 1.06151 1.08506 1.74050 1.21918 0.78518 0.97357 0.96729 0.90326 1.24241 0.99492 1.00999 0.96853 1.21032 0.84807 0.93707 0.94480 0.90803 1.42424 1.07812 1.42338 1.44611 1.19064 0.87580 1.14734 1.14172 0.91743 1.25359 0.95489 1.02088 1.02103 1.69848 1.02121 1.44457 1.46646 0.85592 0.77106 0.79852 0.80383 1.21472 1.21853 1.17827 1.23412 0.96894 0.96617 0.95102 1.22564 0.99923 0.94629 0.96083 1.22787 0.96634 0.99651 0.96848 1.22683 0.99234 1.00302 0.94977 1.19397 0.86747 0.85229 0.91536 1.84674 1.76797 1.32901 1.34993 1.67173 1.08957 1.32506 1.17258 0.88323 0.87080 0.91124 0.79195 0.80514 0.74646 0.87699 0.94105 0.80449 0.93356 0.88514 0.88859 0.89562 0.89912 0.93390 0.90679 0.72440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.67 10.16 71.23 0.72 0.05 16 2 C 0.16 2.22 6.78 42.58 0.29 2.51 16 3 C -0.18 -1.46 9.71 22.32 0.22 -1.24 16 4 C -0.02 -0.19 9.64 22.72 0.22 0.03 16 5 C -0.23 -4.90 5.90 -19.91 -0.12 -5.01 16 6 C 0.56 15.36 7.77 86.69 0.67 16.04 16 7 O -0.57 -21.40 14.79 16.83 0.25 -21.15 16 8 N -0.69 -15.30 5.24 -443.84 -2.32 -17.63 16 9 C 0.16 4.75 4.05 45.38 0.18 4.94 16 10 H 0.08 2.96 7.46 -2.38 -0.02 2.94 16 11 C -0.17 -5.72 7.71 31.33 0.24 -5.48 16 12 C 0.17 6.14 4.35 45.28 0.20 6.34 16 13 H 0.07 2.69 8.11 -2.39 -0.02 2.67 16 14 N -0.73 -34.29 4.91 -321.56 -1.58 -35.87 16 15 C -0.22 -12.82 10.46 84.03 0.88 -11.94 16 16 H 0.06 3.97 8.06 -2.91 -0.02 3.95 16 17 C -0.06 -3.52 5.50 84.86 0.47 -3.06 16 18 N -0.98 -63.57 13.97 21.65 0.30 -63.27 16 19 Si 0.94 47.40 27.74 68.60 1.90 49.31 16 20 H -0.29 -14.63 7.11 99.48 0.71 -13.93 16 21 H -0.29 -14.67 7.11 99.48 0.71 -13.97 16 22 H -0.25 -11.63 6.52 99.48 0.65 -10.99 16 23 C -0.12 -3.14 0.91 -52.31 -0.05 -3.19 16 24 C -0.09 -1.58 7.47 30.89 0.23 -1.35 16 25 C -0.12 -2.09 8.08 31.23 0.25 -1.84 16 26 C -0.13 -3.60 7.46 30.89 0.23 -3.37 16 27 C 0.35 8.82 7.77 85.13 0.66 9.48 16 28 O -0.48 -13.69 11.66 -66.39 -0.77 -14.46 16 29 N -0.54 -11.88 10.28 -296.06 -3.04 -14.92 16 30 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.11 0.04 8.07 -2.38 -0.02 0.02 16 32 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.19 -0.13 8.06 -2.91 -0.02 -0.15 16 34 H 0.18 0.64 6.51 -2.91 -0.02 0.63 16 35 H 0.41 5.60 4.83 -92.71 -0.45 5.16 16 36 H 0.10 2.76 8.14 -2.38 -0.02 2.75 16 37 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.36 17.00 5.64 -92.71 -0.52 16.48 16 39 H 0.26 15.98 8.31 -92.70 -0.77 15.21 16 40 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.09 0.95 6.42 -2.39 -0.02 0.94 16 42 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 45 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 46 H 0.41 8.54 9.06 -74.06 -0.67 7.87 16 Total: -1.00 -84.66 376.83 -0.63 -85.29 By element: Atomic # 1 Polarization: 30.46 SS G_CDS: -0.66 Total: 29.80 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: 5.30 Total: 2.91 kcal Atomic # 7 Polarization: -125.05 SS G_CDS: -6.64 Total: -131.69 kcal Atomic # 8 Polarization: -35.09 SS G_CDS: -0.53 Total: -35.61 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 1.90 Total: 49.31 kcal Total: -84.66 -0.63 -85.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078733584.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.766 kcal (2) G-P(sol) polarization free energy of solvation -84.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds