Wall clock time and date at job start Tue Mar 31 2020 17:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38628 * 120.75623 * 2 1 4 4 C 1.38553 * 119.35058 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.54491 * 179.97438 * 4 3 2 6 6 N 1.31527 * 120.90731 * 359.73364 * 4 3 2 7 7 C 1.32713 * 121.63541 * 0.53246 * 6 4 3 8 8 C 1.48174 * 119.71800 * 179.75135 * 7 6 4 9 9 O 1.21512 * 120.00064 * 172.85476 * 8 7 6 10 10 N 1.34770 * 119.99950 * 352.84605 * 8 7 6 11 11 C 1.44959 * 117.34153 * 354.20328 * 10 8 7 12 12 C 1.51967 * 111.94287 * 203.72985 * 11 10 8 13 13 O 1.41327 * 111.60169 * 319.69740 * 12 11 10 14 14 C 1.40849 * 118.31113 * 56.89433 * 13 12 11 15 15 H 1.09002 * 109.54195 * 187.73742 * 14 13 12 16 16 C 1.53929 * 110.45981 * 68.18695 * 14 13 12 17 17 N 1.46767 * 107.62129 * 221.67393 * 16 14 13 18 18 C 1.36935 * 125.36237 * 178.66510 * 17 16 14 19 19 H 1.08007 * 120.00097 * 186.45563 * 18 17 16 20 20 C 1.38813 * 120.00013 * 6.45691 * 18 17 16 21 21 N 1.31611 * 119.99963 * 7.89678 * 20 18 17 22 22 Si 1.86803 * 119.99760 * 187.89561 * 20 18 17 23 23 H 1.48501 * 109.47044 * 265.01432 * 22 20 18 24 24 H 1.48503 * 109.47299 * 25.01303 * 22 20 18 25 25 H 1.48494 * 109.47018 * 145.01582 * 22 20 18 26 26 C 1.46871 * 109.27542 * 358.40009 * 17 16 14 27 27 C 1.44548 * 117.33898 * 174.17970 * 10 8 7 28 28 H 1.09004 * 109.64733 * 285.99184 * 27 10 8 29 29 C 1.38592 * 120.75391 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47474 * 270.02525 * 1 2 3 31 31 H 1.08997 * 109.47366 * 30.02765 * 1 2 3 32 32 H 1.09004 * 109.46975 * 150.02892 * 1 2 3 33 33 H 1.07993 * 120.32047 * 359.94596 * 3 2 1 34 34 H 1.09002 * 109.47324 * 90.00157 * 5 4 3 35 35 H 1.09001 * 109.47041 * 209.99417 * 5 4 3 36 36 H 1.08997 * 109.47330 * 329.99536 * 5 4 3 37 37 H 1.09001 * 108.98832 * 324.36042 * 11 10 8 38 38 H 1.08999 * 108.98826 * 83.09324 * 11 10 8 39 39 H 1.09000 * 109.05049 * 80.23754 * 12 11 10 40 40 H 1.08991 * 109.05329 * 199.22010 * 12 11 10 41 41 H 1.09007 * 109.95226 * 102.07940 * 16 14 13 42 42 H 1.09002 * 109.70117 * 341.13019 * 16 14 13 43 43 H 0.96999 * 120.00095 * 180.02562 * 21 20 18 44 44 H 1.08999 * 110.06754 * 137.29315 * 26 17 16 45 45 H 1.08998 * 110.06872 * 258.81771 * 26 17 16 46 46 H 1.07992 * 120.47315 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2159 1.1913 0.0000 4 6 3.6010 1.1573 0.0005 5 6 4.3761 2.4498 0.0000 6 7 4.2487 0.0126 0.0063 7 6 3.6082 -1.1497 0.0013 8 6 4.3806 -2.4142 0.0025 9 8 3.8057 -3.4772 0.1289 10 7 5.7208 -2.3852 -0.1367 11 6 6.3340 -1.1009 -0.4122 12 6 7.6807 -1.2505 -1.1001 13 8 8.4272 -2.3198 -0.5555 14 6 7.8512 -3.6051 -0.5559 15 1 8.4818 -4.2875 0.0140 16 6 7.7267 -4.1385 -1.9945 17 7 6.4197 -4.7956 -2.1132 18 6 5.9244 -5.3749 -3.2507 19 1 4.9091 -5.7430 -3.2713 20 6 6.7270 -5.4893 -4.3775 21 7 8.0057 -5.1855 -4.3081 22 14 5.9921 -6.0743 -5.9922 23 1 6.2010 -7.5381 -6.1296 24 1 4.5370 -5.7781 -6.0100 25 1 6.6541 -5.3718 -7.1206 26 6 5.7294 -4.7394 -0.8180 27 6 6.4297 -3.6373 0.0015 28 1 6.4617 -3.9264 1.0520 29 6 2.2157 -1.1910 0.0005 30 1 -0.3634 0.0005 1.0276 31 1 -0.3634 0.8897 -0.5142 32 1 -0.3633 -0.8903 -0.5134 33 1 1.6936 2.1365 -0.0009 34 1 4.5626 2.7621 1.0275 35 1 5.3265 2.3033 -0.5133 36 1 3.8000 3.2187 -0.5147 37 1 5.6703 -0.5215 -1.0540 38 1 6.4730 -0.5655 0.5270 39 1 7.5191 -1.4341 -2.1624 40 1 8.2458 -0.3262 -0.9808 41 1 8.5214 -4.8572 -2.1948 42 1 7.7895 -3.3101 -2.7002 43 1 8.5665 -5.2651 -5.0956 44 1 4.6794 -4.4864 -0.9645 45 1 5.8158 -5.6979 -0.3063 46 1 1.6959 -2.1376 0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083127492.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:05 Heat of formation + Delta-G solvation = 25.962959 kcal Electronic energy + Delta-G solvation = -29863.938118 eV Core-core repulsion = 25949.066274 eV Total energy + Delta-G solvation = -3914.871844 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.21421 -40.00269 -38.17837 -35.80488 -35.07095 -34.14936 -32.98951 -32.11294 -29.89941 -28.29398 -27.92908 -27.81621 -27.30232 -24.92439 -23.94326 -23.14432 -21.40121 -21.02552 -19.84275 -18.65860 -17.52176 -17.07434 -16.55185 -16.44318 -16.10319 -15.61829 -15.37227 -14.75866 -14.63828 -14.55864 -14.35251 -13.89991 -13.78053 -13.60260 -13.42087 -13.04132 -12.84022 -12.67889 -12.59809 -12.44768 -12.18465 -12.06107 -11.90250 -11.71947 -11.35387 -11.08123 -10.84784 -10.60694 -10.51456 -10.38303 -10.04433 -9.80507 -9.67906 -9.53485 -9.28286 -9.09385 -8.71240 -8.50877 -8.09151 -6.71385 -5.64847 -2.99432 0.57164 1.01058 2.78664 3.08456 3.43172 3.48486 3.51113 3.73518 3.89170 4.23287 4.33297 4.42739 4.55374 4.77322 4.87530 4.95416 5.09943 5.17932 5.23560 5.29060 5.33657 5.35127 5.38298 5.47005 5.51601 5.57552 5.60958 5.67744 5.77786 5.82074 5.87161 5.91178 6.02605 6.07973 6.17850 6.19796 6.39766 6.47107 6.64093 6.89179 7.26501 7.38869 7.52413 7.65770 7.69590 7.80640 7.96369 8.31083 8.39092 9.27434 9.88831 10.53042 11.45117 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.012735 B = 0.004136 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.103084 B = 6768.891001 C = 7672.603210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.047 4.047 3 C -0.157 4.157 4 C 0.121 3.879 5 C -0.103 4.103 6 N -0.455 5.455 7 C 0.095 3.905 8 C 0.559 3.441 9 O -0.519 6.519 10 N -0.562 5.562 11 C 0.090 3.910 12 C 0.053 3.947 13 O -0.373 6.373 14 C 0.071 3.929 15 H 0.111 0.889 16 C 0.147 3.853 17 N -0.600 5.600 18 C -0.221 4.221 19 H 0.077 0.923 20 C -0.010 4.010 21 N -0.921 5.921 22 Si 0.909 3.091 23 H -0.289 1.289 24 H -0.282 1.282 25 H -0.291 1.291 26 C 0.105 3.895 27 C 0.107 3.893 28 H 0.073 0.927 29 C -0.118 4.118 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.136 0.864 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.105 0.895 38 H 0.069 0.931 39 H 0.055 0.945 40 H 0.100 0.900 41 H 0.069 0.931 42 H 0.037 0.963 43 H 0.251 0.749 44 H 0.091 0.909 45 H 0.025 0.975 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.490 17.038 11.191 22.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.055 4.055 3 C -0.177 4.177 4 C -0.018 4.018 5 C -0.160 4.160 6 N -0.169 5.169 7 C -0.043 4.043 8 C 0.345 3.655 9 O -0.396 6.396 10 N -0.293 5.293 11 C -0.033 4.033 12 C -0.025 4.025 13 O -0.290 6.290 14 C 0.012 3.988 15 H 0.129 0.871 16 C 0.022 3.978 17 N -0.327 5.327 18 C -0.350 4.350 19 H 0.095 0.905 20 C -0.206 4.206 21 N -0.569 5.569 22 Si 0.740 3.260 23 H -0.216 1.216 24 H -0.207 1.207 25 H -0.217 1.217 26 C -0.020 4.020 27 C 0.003 3.997 28 H 0.091 0.909 29 C -0.139 4.139 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.154 0.846 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.122 0.878 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.118 0.882 41 H 0.087 0.913 42 H 0.055 0.945 43 H 0.062 0.938 44 H 0.109 0.891 45 H 0.043 0.957 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -8.549 16.422 11.124 21.599 hybrid contribution -1.396 -0.308 -1.059 1.779 sum -9.945 16.114 10.065 21.445 Atomic orbital electron populations 1.20831 0.89739 1.03631 1.03027 1.20331 0.97061 0.92525 0.95539 1.22018 0.94822 0.98733 1.02091 1.21442 0.91254 0.94167 0.94967 1.20721 1.00470 0.91594 1.03219 1.68079 1.39416 0.97607 1.11826 1.21228 0.91758 0.92154 0.99162 1.17983 0.82138 0.87220 0.78139 1.90667 1.69881 1.29364 1.49655 1.46468 1.06044 1.08491 1.68288 1.22117 0.95547 0.83899 1.01735 1.22406 0.91739 0.90396 0.97937 1.86850 1.44036 1.15862 1.82232 1.22919 0.91596 0.84087 1.00240 0.87133 1.21749 0.89737 0.96875 0.89448 1.44242 1.15967 1.66295 1.06223 1.19051 0.96202 1.31567 0.88157 0.90497 1.24782 0.95582 1.01866 0.98337 1.69944 1.03835 1.54813 1.28318 0.86129 0.78117 0.78179 0.83562 1.21617 1.20732 1.21723 1.22197 0.99595 0.93481 0.86773 1.21779 0.94185 0.84080 0.99671 0.90933 1.21985 0.93744 0.99597 0.98593 0.90361 0.90896 0.90623 0.84605 0.90273 0.90107 0.90680 0.87760 0.91271 0.92659 0.88176 0.91325 0.94493 0.93843 0.89124 0.95704 0.83463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.80 10.06 36.01 0.36 -0.44 16 2 C -0.05 -0.47 5.91 -104.35 -0.62 -1.09 16 3 C -0.16 -1.43 9.45 -39.32 -0.37 -1.81 16 4 C 0.12 1.27 6.78 -82.60 -0.56 0.71 16 5 C -0.10 -0.72 10.17 36.01 0.37 -0.36 16 6 N -0.46 -6.12 5.77 -6.06 -0.03 -6.16 16 7 C 0.09 1.45 6.48 -83.01 -0.54 0.92 16 8 C 0.56 10.37 7.18 -12.18 -0.09 10.29 16 9 O -0.52 -10.75 13.10 5.36 0.07 -10.68 16 10 N -0.56 -10.41 3.09 -169.81 -0.52 -10.94 16 11 C 0.09 1.42 4.96 -5.39 -0.03 1.40 16 12 C 0.05 0.86 6.73 36.63 0.25 1.11 16 13 O -0.37 -7.07 10.24 -34.45 -0.35 -7.42 16 14 C 0.07 1.44 3.82 -26.39 -0.10 1.34 16 15 H 0.11 2.07 8.14 -51.93 -0.42 1.65 16 16 C 0.15 3.72 5.08 -3.41 -0.02 3.71 16 17 N -0.60 -16.20 3.39 -171.43 -0.58 -16.78 16 18 C -0.22 -6.48 10.23 -15.06 -0.15 -6.63 16 19 H 0.08 2.22 7.84 -52.48 -0.41 1.81 16 20 C -0.01 -0.28 5.44 -17.43 -0.09 -0.38 16 21 N -0.92 -27.73 10.44 55.49 0.58 -27.15 16 22 Si 0.91 22.86 29.56 -169.99 -5.03 17.84 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 C 0.11 2.46 6.30 -3.23 -0.02 2.44 16 27 C 0.11 2.14 3.43 -68.51 -0.24 1.90 16 28 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 29 C -0.12 -1.56 9.34 -39.05 -0.36 -1.93 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.39 8.10 -51.93 -0.42 -0.03 16 32 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 33 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 37 H 0.10 1.62 5.55 -51.93 -0.29 1.33 16 38 H 0.07 1.00 7.77 -51.93 -0.40 0.59 16 39 H 0.06 1.04 6.84 -51.93 -0.35 0.68 16 40 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 41 H 0.07 1.93 6.95 -51.92 -0.36 1.56 16 42 H 0.04 1.02 6.32 -51.93 -0.33 0.70 16 43 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.09 2.25 4.69 -53.31 -0.25 2.00 16 45 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.15 1.93 7.66 -52.49 -0.40 1.53 16 LS Contribution 359.54 15.07 5.42 5.42 Total: -1.00 -34.25 359.54 -9.24 -43.49 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -6.58 Total: 1.20 kcal Atomic # 6 Polarization: 13.39 SS G_CDS: -2.21 Total: 11.18 kcal Atomic # 7 Polarization: -60.47 SS G_CDS: -0.56 Total: -61.03 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -0.28 Total: -18.10 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.03 Total: 17.84 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.25 -9.24 -43.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083127492.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.453 kcal (2) G-P(sol) polarization free energy of solvation -34.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds