Wall clock time and date at job start Tue Mar 31 2020 17:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38628 * 120.75623 * 2 1 4 4 C 1.38553 * 119.35058 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.54491 * 179.97438 * 4 3 2 6 6 N 1.31527 * 120.90731 * 359.73364 * 4 3 2 7 7 C 1.32713 * 121.63541 * 0.53246 * 6 4 3 8 8 C 1.48174 * 119.71800 * 179.75135 * 7 6 4 9 9 O 1.21512 * 120.00064 * 172.85476 * 8 7 6 10 10 N 1.34770 * 119.99950 * 352.84605 * 8 7 6 11 11 C 1.44959 * 117.34153 * 354.20328 * 10 8 7 12 12 C 1.51967 * 111.94287 * 203.72985 * 11 10 8 13 13 O 1.41327 * 111.60169 * 319.69740 * 12 11 10 14 14 C 1.40849 * 118.31113 * 56.89433 * 13 12 11 15 15 H 1.09002 * 109.54195 * 187.73742 * 14 13 12 16 16 C 1.53929 * 110.45981 * 68.18695 * 14 13 12 17 17 N 1.46767 * 107.62129 * 221.67393 * 16 14 13 18 18 C 1.36935 * 125.36237 * 178.66510 * 17 16 14 19 19 H 1.08007 * 120.00097 * 186.45563 * 18 17 16 20 20 C 1.38813 * 120.00013 * 6.45691 * 18 17 16 21 21 N 1.31611 * 119.99963 * 7.89678 * 20 18 17 22 22 Si 1.86803 * 119.99760 * 187.89561 * 20 18 17 23 23 H 1.48501 * 109.47044 * 265.01432 * 22 20 18 24 24 H 1.48503 * 109.47299 * 25.01303 * 22 20 18 25 25 H 1.48494 * 109.47018 * 145.01582 * 22 20 18 26 26 C 1.46871 * 109.27542 * 358.40009 * 17 16 14 27 27 C 1.44548 * 117.33898 * 174.17970 * 10 8 7 28 28 H 1.09004 * 109.64733 * 285.99184 * 27 10 8 29 29 C 1.38592 * 120.75391 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47474 * 270.02525 * 1 2 3 31 31 H 1.08997 * 109.47366 * 30.02765 * 1 2 3 32 32 H 1.09004 * 109.46975 * 150.02892 * 1 2 3 33 33 H 1.07993 * 120.32047 * 359.94596 * 3 2 1 34 34 H 1.09002 * 109.47324 * 90.00157 * 5 4 3 35 35 H 1.09001 * 109.47041 * 209.99417 * 5 4 3 36 36 H 1.08997 * 109.47330 * 329.99536 * 5 4 3 37 37 H 1.09001 * 108.98832 * 324.36042 * 11 10 8 38 38 H 1.08999 * 108.98826 * 83.09324 * 11 10 8 39 39 H 1.09000 * 109.05049 * 80.23754 * 12 11 10 40 40 H 1.08991 * 109.05329 * 199.22010 * 12 11 10 41 41 H 1.09007 * 109.95226 * 102.07940 * 16 14 13 42 42 H 1.09002 * 109.70117 * 341.13019 * 16 14 13 43 43 H 0.96999 * 120.00095 * 180.02562 * 21 20 18 44 44 H 1.08999 * 110.06754 * 137.29315 * 26 17 16 45 45 H 1.08998 * 110.06872 * 258.81771 * 26 17 16 46 46 H 1.07992 * 120.47315 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2159 1.1913 0.0000 4 6 3.6010 1.1573 0.0005 5 6 4.3761 2.4498 0.0000 6 7 4.2487 0.0126 0.0063 7 6 3.6082 -1.1497 0.0013 8 6 4.3806 -2.4142 0.0025 9 8 3.8057 -3.4772 0.1289 10 7 5.7208 -2.3852 -0.1367 11 6 6.3340 -1.1009 -0.4122 12 6 7.6807 -1.2505 -1.1001 13 8 8.4272 -2.3198 -0.5555 14 6 7.8512 -3.6051 -0.5559 15 1 8.4818 -4.2875 0.0140 16 6 7.7267 -4.1385 -1.9945 17 7 6.4197 -4.7956 -2.1132 18 6 5.9244 -5.3749 -3.2507 19 1 4.9091 -5.7430 -3.2713 20 6 6.7270 -5.4893 -4.3775 21 7 8.0057 -5.1855 -4.3081 22 14 5.9921 -6.0743 -5.9922 23 1 6.2010 -7.5381 -6.1296 24 1 4.5370 -5.7781 -6.0100 25 1 6.6541 -5.3718 -7.1206 26 6 5.7294 -4.7394 -0.8180 27 6 6.4297 -3.6373 0.0015 28 1 6.4617 -3.9264 1.0520 29 6 2.2157 -1.1910 0.0005 30 1 -0.3634 0.0005 1.0276 31 1 -0.3634 0.8897 -0.5142 32 1 -0.3633 -0.8903 -0.5134 33 1 1.6936 2.1365 -0.0009 34 1 4.5626 2.7621 1.0275 35 1 5.3265 2.3033 -0.5133 36 1 3.8000 3.2187 -0.5147 37 1 5.6703 -0.5215 -1.0540 38 1 6.4730 -0.5655 0.5270 39 1 7.5191 -1.4341 -2.1624 40 1 8.2458 -0.3262 -0.9808 41 1 8.5214 -4.8572 -2.1948 42 1 7.7895 -3.3101 -2.7002 43 1 8.5665 -5.2651 -5.0956 44 1 4.6794 -4.4864 -0.9645 45 1 5.8158 -5.6979 -0.3063 46 1 1.6959 -2.1376 0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083127492.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:04 Heat of formation + Delta-G solvation = 3.080935 kcal Electronic energy + Delta-G solvation = -29864.930357 eV Core-core repulsion = 25949.066274 eV Total energy + Delta-G solvation = -3915.864083 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.49638 -41.18170 -39.63381 -37.63439 -36.39955 -35.10557 -34.43235 -33.56430 -31.70073 -29.61004 -29.33319 -28.95451 -28.27939 -26.74679 -25.32480 -24.65728 -22.72193 -22.20584 -21.39341 -20.18829 -19.13889 -18.53732 -18.28004 -17.54563 -17.15106 -16.98067 -16.93013 -16.38379 -16.13575 -15.80461 -15.73568 -15.40091 -15.19458 -14.73123 -14.36528 -14.14936 -14.11921 -13.85666 -13.81630 -13.59177 -13.45082 -13.13373 -13.06091 -13.00457 -12.90540 -12.77888 -12.49338 -12.44252 -12.22023 -12.15925 -11.85063 -11.75118 -11.02179 -10.82371 -10.71825 -10.50604 -10.04823 -9.98216 -9.56576 -8.90165 -7.89188 -5.27688 -0.40436 0.17914 1.39834 1.41991 1.51785 1.57393 1.73294 2.43768 2.67382 2.75471 2.91808 3.26618 3.36377 3.60828 3.66964 3.68468 3.73878 3.93544 3.98860 4.04236 4.11063 4.22250 4.30759 4.35407 4.48292 4.52523 4.59303 4.66930 4.72585 4.78020 4.81003 4.89264 4.93133 4.99866 5.02413 5.07388 5.16209 5.27869 5.29427 5.31358 5.46426 5.60838 5.63420 5.70200 6.12800 6.14590 6.36736 6.70896 6.99625 7.05060 7.70682 8.33663 9.18766 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.012735 B = 0.004136 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.103084 B = 6768.891001 C = 7672.603210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.046 4.046 3 C -0.141 4.141 4 C 0.114 3.886 5 C -0.100 4.100 6 N -0.470 5.470 7 C 0.065 3.935 8 C 0.551 3.449 9 O -0.554 6.554 10 N -0.572 5.572 11 C 0.097 3.903 12 C 0.049 3.951 13 O -0.372 6.372 14 C 0.086 3.914 15 H 0.131 0.869 16 C 0.160 3.840 17 N -0.617 5.617 18 C -0.246 4.246 19 H 0.072 0.928 20 C -0.060 4.060 21 N -0.945 5.945 22 Si 0.978 3.022 23 H -0.282 1.282 24 H -0.274 1.274 25 H -0.288 1.288 26 C 0.104 3.896 27 C 0.117 3.883 28 H 0.094 0.906 29 C -0.133 4.133 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.070 0.930 33 H 0.178 0.822 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.101 0.899 37 H 0.108 0.892 38 H 0.091 0.909 39 H 0.024 0.976 40 H 0.145 0.855 41 H 0.035 0.965 42 H 0.005 0.995 43 H 0.249 0.751 44 H 0.078 0.922 45 H 0.022 0.978 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.864 20.302 11.932 25.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.053 4.053 3 C -0.161 4.161 4 C -0.026 4.026 5 C -0.157 4.157 6 N -0.184 5.184 7 C -0.071 4.071 8 C 0.340 3.660 9 O -0.433 6.433 10 N -0.302 5.302 11 C -0.025 4.025 12 C -0.028 4.028 13 O -0.289 6.289 14 C 0.026 3.974 15 H 0.148 0.852 16 C 0.034 3.966 17 N -0.345 5.345 18 C -0.375 4.375 19 H 0.090 0.910 20 C -0.253 4.253 21 N -0.594 5.594 22 Si 0.806 3.194 23 H -0.208 1.208 24 H -0.199 1.199 25 H -0.214 1.214 26 C -0.022 4.022 27 C 0.012 3.988 28 H 0.112 0.888 29 C -0.154 4.154 30 H 0.111 0.889 31 H 0.115 0.885 32 H 0.089 0.911 33 H 0.196 0.804 34 H 0.112 0.888 35 H 0.095 0.905 36 H 0.120 0.880 37 H 0.126 0.874 38 H 0.109 0.891 39 H 0.042 0.958 40 H 0.162 0.838 41 H 0.053 0.947 42 H 0.023 0.977 43 H 0.058 0.942 44 H 0.095 0.905 45 H 0.040 0.960 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.928 19.705 11.887 25.063 hybrid contribution -1.054 -1.198 -1.283 2.048 sum -10.982 18.507 10.604 23.991 Atomic orbital electron populations 1.20918 0.87270 1.04610 1.04223 1.20713 0.98762 0.91663 0.94199 1.22508 0.94416 0.99943 0.99204 1.22139 0.92511 0.94275 0.93692 1.20847 1.00240 0.90212 1.04450 1.67936 1.40027 0.97807 1.12654 1.20794 0.92098 0.91564 1.02687 1.18587 0.82135 0.88316 0.77003 1.90619 1.70440 1.31042 1.51239 1.46636 1.06382 1.08710 1.68493 1.22228 0.94742 0.82801 1.02694 1.22686 0.92928 0.91111 0.96040 1.86858 1.44479 1.15523 1.82040 1.22699 0.92485 0.85254 0.96927 0.85172 1.21491 0.88088 0.94805 0.92177 1.44480 1.16866 1.66176 1.06930 1.19337 0.96308 1.32197 0.89631 0.91044 1.25626 0.95992 1.02138 1.01538 1.70160 1.04895 1.55445 1.28888 0.85079 0.77595 0.77756 0.79000 1.20838 1.19909 1.21440 1.22250 0.99116 0.94824 0.85968 1.21585 0.93271 0.84058 0.99904 0.88811 1.22040 0.93200 1.00650 0.99560 0.88911 0.88506 0.91088 0.80437 0.88831 0.90547 0.88028 0.87433 0.89112 0.95806 0.83775 0.94723 0.97720 0.94181 0.90493 0.95980 0.84731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.24 10.06 71.24 0.72 -0.52 16 2 C -0.05 -0.82 5.91 -19.69 -0.12 -0.94 16 3 C -0.14 -2.04 9.45 22.44 0.21 -1.82 16 4 C 0.11 2.04 6.78 42.68 0.29 2.33 16 5 C -0.10 -1.01 10.17 71.24 0.72 -0.29 16 6 N -0.47 -12.00 5.77 -173.08 -1.00 -13.00 16 7 C 0.06 2.00 6.48 41.91 0.27 2.27 16 8 C 0.55 21.14 7.18 86.88 0.62 21.77 16 9 O -0.55 -24.21 13.10 -3.75 -0.05 -24.26 16 10 N -0.57 -21.45 3.09 -809.46 -2.50 -23.95 16 11 C 0.10 3.00 4.96 86.33 0.43 3.43 16 12 C 0.05 1.58 6.73 71.64 0.48 2.06 16 13 O -0.37 -13.91 10.24 -146.18 -1.50 -15.40 16 14 C 0.09 3.54 3.82 30.81 0.12 3.66 16 15 H 0.13 4.84 8.14 -2.39 -0.02 4.82 16 16 C 0.16 8.49 5.08 86.64 0.44 8.93 16 17 N -0.62 -34.95 3.39 -696.29 -2.36 -37.31 16 18 C -0.25 -15.00 10.23 84.03 0.86 -14.14 16 19 H 0.07 4.31 7.84 -2.91 -0.02 4.28 16 20 C -0.06 -3.57 5.44 84.86 0.46 -3.11 16 21 N -0.95 -59.02 10.44 21.65 0.23 -58.79 16 22 Si 0.98 48.11 29.56 68.60 2.03 50.14 16 23 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 24 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 25 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 26 C 0.10 5.07 6.30 86.70 0.55 5.62 16 27 C 0.12 4.74 3.43 45.66 0.16 4.89 16 28 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 29 C -0.13 -3.52 9.34 22.61 0.21 -3.31 16 30 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.10 0.62 8.10 -2.39 -0.02 0.60 16 32 H 0.07 0.86 8.10 -2.38 -0.02 0.84 16 33 H 0.18 1.07 8.06 -2.91 -0.02 1.05 16 34 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.10 0.51 8.08 -2.39 -0.02 0.49 16 37 H 0.11 3.29 5.55 -2.39 -0.01 3.28 16 38 H 0.09 2.43 7.77 -2.39 -0.02 2.41 16 39 H 0.02 0.92 6.84 -2.39 -0.02 0.90 16 40 H 0.14 3.34 8.14 -2.39 -0.02 3.32 16 41 H 0.03 2.05 6.95 -2.38 -0.02 2.04 16 42 H 0.00 0.28 6.32 -2.39 -0.02 0.26 16 43 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 44 H 0.08 4.05 4.69 -24.30 -0.11 3.94 16 45 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.13 3.76 7.66 -2.91 -0.02 3.73 16 Total: -1.00 -79.33 359.54 2.17 -77.16 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 0.89 Total: 14.60 kcal Atomic # 6 Polarization: 24.39 SS G_CDS: 6.43 Total: 30.82 kcal Atomic # 7 Polarization: -127.42 SS G_CDS: -5.63 Total: -133.05 kcal Atomic # 8 Polarization: -38.12 SS G_CDS: -1.55 Total: -39.67 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 2.03 Total: 50.14 kcal Total: -79.33 2.17 -77.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083127492.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.240 kcal (2) G-P(sol) polarization free energy of solvation -79.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds