Wall clock time and date at job start Tue Mar 31 2020 16:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38624 * 120.32295 * 2 1 4 4 C 1.38586 * 118.48830 * 179.76822 * 3 2 1 5 5 C 1.39316 * 119.05908 * 0.49012 * 4 3 2 6 6 C 1.48165 * 119.72194 * 179.77547 * 5 4 3 7 7 O 1.21513 * 120.00362 * 352.46080 * 6 5 4 8 8 N 1.34777 * 119.99821 * 172.46542 * 6 5 4 9 9 C 1.44963 * 117.33871 * 0.02576 * 8 6 5 10 10 C 1.51965 * 111.93829 * 203.73509 * 9 8 6 11 11 O 1.41316 * 111.60545 * 319.69032 * 10 9 8 12 12 C 1.40311 * 117.96348 * 57.08387 * 11 10 9 13 13 H 1.08992 * 109.02296 * 187.28282 * 12 11 10 14 14 C 1.53927 * 110.67247 * 67.92466 * 12 11 10 15 15 N 1.46772 * 107.62039 * 221.16436 * 14 12 11 16 16 C 1.36943 * 125.36039 * 178.66646 * 15 14 12 17 17 H 1.07991 * 119.99960 * 155.53430 * 16 15 14 18 18 C 1.38813 * 119.99825 * 335.52981 * 16 15 14 19 19 N 1.31618 * 119.99487 * 154.79760 * 18 16 15 20 20 Si 1.86799 * 120.00200 * 334.79760 * 18 16 15 21 21 H 1.48503 * 109.46774 * 86.87968 * 20 18 16 22 22 H 1.48499 * 109.47040 * 326.87926 * 20 18 16 23 23 H 1.48495 * 109.47111 * 206.87551 * 20 18 16 24 24 C 1.46871 * 109.27417 * 358.40349 * 15 14 12 25 25 C 1.44547 * 117.33850 * 180.02562 * 8 6 5 26 26 H 1.09005 * 109.64460 * 285.98443 * 25 8 6 27 27 N 1.32711 * 120.55023 * 359.49655 * 5 4 3 28 28 C 1.31523 * 121.64648 * 0.25628 * 27 5 4 29 29 C 1.50701 * 119.55189 * 180.02562 * 28 27 5 30 30 H 1.08998 * 109.47893 * 269.98669 * 1 2 3 31 31 H 1.09000 * 109.46955 * 29.98576 * 1 2 3 32 32 H 1.09002 * 109.47138 * 149.98026 * 1 2 3 33 33 H 1.08005 * 120.75904 * 0.02562 * 3 2 1 34 34 H 1.08002 * 120.47523 * 180.26008 * 4 3 2 35 35 H 1.09008 * 108.98216 * 324.36231 * 9 8 6 36 36 H 1.08996 * 108.99105 * 83.17361 * 9 8 6 37 37 H 1.09001 * 109.05131 * 80.24322 * 10 9 8 38 38 H 1.09000 * 109.04817 * 199.21936 * 10 9 8 39 39 H 1.09004 * 109.94701 * 101.57227 * 14 12 11 40 40 H 1.09001 * 109.70832 * 340.62050 * 14 12 11 41 41 H 0.97000 * 120.00433 * 5.36076 * 19 18 16 42 42 H 1.09000 * 110.06477 * 137.29186 * 24 15 14 43 43 H 1.08996 * 110.06690 * 258.81506 * 24 15 14 44 44 H 1.08997 * 109.47033 * 89.99687 * 29 28 27 45 45 H 1.09005 * 109.47187 * 209.99935 * 29 28 27 46 46 H 1.09000 * 109.46806 * 329.99395 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1966 0.0000 4 6 3.5920 1.1522 0.0049 5 6 4.2294 -0.0866 -0.0007 6 6 5.7096 -0.1511 -0.0006 7 8 6.3622 0.8653 -0.1337 8 7 6.3324 -1.3372 0.1470 9 6 5.4980 -2.5126 0.3007 10 6 6.2293 -3.6389 1.0121 11 8 7.5714 -3.7415 0.5817 12 6 8.3916 -2.6102 0.7095 13 1 9.3458 -2.8061 0.2205 14 6 8.6563 -2.2957 2.1929 15 7 8.5760 -0.8397 2.3596 16 6 8.7280 -0.1679 3.5432 17 1 9.0446 0.8646 3.5412 18 6 8.4751 -0.8141 4.7454 19 7 9.0596 -0.4011 5.8500 20 14 7.3054 -2.2696 4.7955 21 1 8.0533 -3.5163 4.4923 22 1 6.2330 -2.0778 3.7863 23 1 6.7002 -2.3720 6.1476 24 6 8.3132 -0.2163 1.0559 25 6 7.7778 -1.3336 0.1392 26 1 8.1384 -1.1766 -0.8774 27 7 3.5217 -1.2093 -0.0007 28 6 2.2066 -1.1960 -0.0003 29 6 1.4501 -2.4994 0.0003 30 1 -0.3635 -0.0002 1.0276 31 1 -0.3633 0.8901 -0.5136 32 1 -0.3633 -0.8898 -0.5141 33 1 1.6846 2.1420 0.0004 34 1 4.1693 2.0650 0.0093 35 1 4.6119 -2.2456 0.8767 36 1 5.1886 -2.8593 -0.6852 37 1 6.2132 -3.4513 2.0857 38 1 5.7183 -4.5798 0.8078 39 1 9.6489 -2.6460 2.4760 40 1 7.9015 -2.7808 2.8119 41 1 9.6052 0.4008 5.8395 42 1 7.5665 0.5708 1.1615 43 1 9.2353 0.1950 0.6454 44 1 1.2681 -2.8133 1.0281 45 1 0.4978 -2.3672 -0.5133 46 1 2.0374 -3.2605 -0.5135 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083144501.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:16 Heat of formation + Delta-G solvation = 30.880893 kcal Electronic energy + Delta-G solvation = -30270.725318 eV Core-core repulsion = 26356.066732 eV Total energy + Delta-G solvation = -3914.658586 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.34265 -40.20687 -38.40342 -36.10460 -35.10733 -34.05046 -33.20647 -32.42233 -30.36963 -28.85778 -28.30824 -28.01410 -27.04163 -24.31660 -23.61371 -23.20676 -22.27296 -20.83108 -20.18845 -19.01741 -17.74770 -17.33883 -17.16180 -16.66815 -15.90716 -15.83870 -15.36766 -15.13059 -14.82714 -14.61441 -14.55172 -14.10166 -13.88171 -13.66120 -13.45403 -13.24560 -13.12198 -12.97432 -12.70634 -12.46679 -12.35948 -12.27087 -12.03408 -11.83097 -11.49399 -11.27156 -11.13003 -10.99710 -10.65111 -10.48235 -9.95784 -9.82553 -9.62559 -9.46574 -9.19243 -8.99668 -8.83024 -8.34102 -8.21782 -7.01456 -6.25143 -3.24811 0.52249 1.01151 2.73916 2.99769 3.39189 3.47565 3.66248 3.69825 3.81321 4.05209 4.37458 4.47917 4.57637 4.58434 4.60481 4.87332 4.99148 5.04932 5.11877 5.14255 5.20840 5.28743 5.32295 5.35301 5.37355 5.39184 5.43456 5.54272 5.57702 5.70927 5.78143 5.79719 5.85089 5.93771 5.97682 6.06863 6.14365 6.40393 6.47358 6.55636 6.70921 6.77191 7.12124 7.40924 7.55991 7.66647 7.91320 8.29530 8.41037 9.06732 9.61447 10.31483 11.15021 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.013424 B = 0.004552 C = 0.004421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.342784 B = 6149.646853 C = 6331.354279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.119 4.119 3 C -0.080 4.080 4 C -0.110 4.110 5 C 0.084 3.916 6 C 0.561 3.439 7 O -0.520 6.520 8 N -0.566 5.566 9 C 0.076 3.924 10 C 0.045 3.955 11 O -0.368 6.368 12 C 0.087 3.913 13 H 0.119 0.881 14 C 0.092 3.908 15 N -0.602 5.602 16 C -0.324 4.324 17 H 0.071 0.929 18 C -0.013 4.013 19 N -0.917 5.917 20 Si 1.062 2.938 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.298 1.298 24 C 0.107 3.893 25 C 0.106 3.894 26 H 0.080 0.920 27 N -0.448 5.448 28 C 0.116 3.884 29 C -0.107 4.107 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.141 0.859 34 H 0.149 0.851 35 H 0.124 0.876 36 H 0.068 0.932 37 H 0.053 0.947 38 H 0.106 0.894 39 H 0.047 0.953 40 H 0.031 0.969 41 H 0.264 0.736 42 H 0.088 0.912 43 H 0.034 0.966 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.405 -3.925 -15.323 24.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.121 4.121 3 C -0.106 4.106 4 C -0.131 4.131 5 C -0.054 4.054 6 C 0.348 3.652 7 O -0.397 6.397 8 N -0.297 5.297 9 C -0.047 4.047 10 C -0.033 4.033 11 O -0.285 6.285 12 C 0.028 3.972 13 H 0.136 0.864 14 C -0.033 4.033 15 N -0.330 5.330 16 C -0.452 4.452 17 H 0.089 0.911 18 C -0.215 4.215 19 N -0.557 5.557 20 Si 0.895 3.105 21 H -0.218 1.218 22 H -0.220 1.220 23 H -0.226 1.226 24 C -0.019 4.019 25 C 0.001 3.999 26 H 0.097 0.903 27 N -0.161 5.161 28 C -0.023 4.023 29 C -0.164 4.164 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.159 0.841 34 H 0.167 0.833 35 H 0.141 0.859 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.124 0.876 39 H 0.065 0.935 40 H 0.048 0.952 41 H 0.074 0.926 42 H 0.105 0.895 43 H 0.051 0.949 44 H 0.099 0.901 45 H 0.097 0.903 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -18.080 -5.496 -14.391 23.753 hybrid contribution 0.145 2.205 -0.782 2.344 sum -17.935 -3.291 -15.173 23.722 Atomic orbital electron populations 1.20859 0.90001 1.03350 1.02950 1.20916 0.97662 0.93600 0.99971 1.21495 0.93562 0.98406 0.97122 1.22084 0.94879 0.99003 0.97130 1.21180 0.94267 0.89697 1.00259 1.17940 0.85745 0.83582 0.77926 1.90709 1.65130 1.34382 1.49440 1.46529 1.05979 1.07331 1.69891 1.22447 0.94513 0.85449 1.02310 1.22578 0.82623 0.99073 0.98979 1.86816 1.21474 1.35642 1.84569 1.22422 0.93445 0.84420 0.96923 0.86350 1.22179 0.99838 0.87772 0.93540 1.44511 1.84146 1.00140 1.04238 1.19951 1.44103 0.98667 0.82453 0.91083 1.25972 0.99788 1.04396 0.91338 1.70916 1.31112 1.23865 1.29788 0.83773 0.77182 0.75576 0.73921 1.21798 1.21973 1.22620 1.22191 0.98588 0.95353 0.85721 1.21779 0.79279 0.98544 1.00258 0.90261 1.68011 1.07342 1.29242 1.11509 1.21339 0.89656 0.95340 0.96010 1.20806 0.99269 0.92888 1.03448 0.90464 0.91193 0.90588 0.84113 0.83322 0.85857 0.91344 0.92859 0.87622 0.93542 0.95153 0.92568 0.89463 0.94862 0.90074 0.90272 0.90220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 9.62 36.01 0.35 -0.31 16 2 C -0.12 -1.12 5.91 -104.36 -0.62 -1.73 16 3 C -0.08 -0.81 9.85 -39.31 -0.39 -1.20 16 4 C -0.11 -1.46 9.63 -39.05 -0.38 -1.84 16 5 C 0.08 1.30 6.54 -83.01 -0.54 0.76 16 6 C 0.56 10.48 7.08 -12.18 -0.09 10.40 16 7 O -0.52 -10.78 13.35 5.35 0.07 -10.71 16 8 N -0.57 -10.42 3.09 -169.85 -0.52 -10.94 16 9 C 0.08 1.19 5.07 -5.39 -0.03 1.16 16 10 C 0.04 0.71 6.71 36.63 0.25 0.96 16 11 O -0.37 -6.49 10.26 -33.49 -0.34 -6.83 16 12 C 0.09 1.64 3.76 -26.40 -0.10 1.54 16 13 H 0.12 1.93 8.14 -51.93 -0.42 1.51 16 14 C 0.09 2.15 5.46 -3.41 -0.02 2.13 16 15 N -0.60 -15.76 3.10 -171.46 -0.53 -16.30 16 16 C -0.32 -9.76 10.34 -15.06 -0.16 -9.91 16 17 H 0.07 2.27 8.06 -52.49 -0.42 1.85 16 18 C -0.01 -0.40 5.40 -17.43 -0.09 -0.49 16 19 N -0.92 -29.45 13.70 55.49 0.76 -28.69 16 20 Si 1.06 27.98 24.70 -169.99 -4.20 23.78 16 21 H -0.29 -7.27 6.78 56.52 0.38 -6.88 16 22 H -0.29 -7.40 6.42 56.52 0.36 -7.04 16 23 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 24 C 0.11 2.45 6.29 -3.26 -0.02 2.43 16 25 C 0.11 2.03 3.40 -68.54 -0.23 1.80 16 26 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 27 N -0.45 -6.12 5.68 -6.06 -0.03 -6.16 16 28 C 0.12 1.24 6.78 -82.60 -0.56 0.68 16 29 C -0.11 -0.76 9.77 36.01 0.35 -0.41 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 32 H 0.08 0.33 5.95 -51.93 -0.31 0.02 16 33 H 0.14 1.00 8.06 -52.48 -0.42 0.57 16 34 H 0.15 1.94 7.66 -52.49 -0.40 1.54 16 35 H 0.12 1.95 5.05 -60.58 -0.31 1.64 16 36 H 0.07 0.95 8.01 -51.93 -0.42 0.54 16 37 H 0.05 0.99 5.75 -51.93 -0.30 0.69 16 38 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.03 0.76 1.83 -51.93 -0.09 0.66 16 41 H 0.26 8.38 8.73 -40.82 -0.36 8.02 16 42 H 0.09 2.18 4.89 -52.01 -0.25 1.93 16 43 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.08 0.39 5.94 -51.93 -0.31 0.08 16 46 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 348.95 15.07 5.26 5.26 Total: -1.00 -35.96 348.95 -8.06 -44.02 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -6.25 Total: 0.62 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: -2.27 Total: 5.95 kcal Atomic # 7 Polarization: -61.76 SS G_CDS: -0.33 Total: -62.09 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -0.27 Total: -17.54 kcal Atomic # 14 Polarization: 27.98 SS G_CDS: -4.20 Total: 23.78 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.96 -8.06 -44.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083144501.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.902 kcal (2) G-P(sol) polarization free energy of solvation -35.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds