Wall clock time and date at job start Tue Mar 31 2020 16:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38624 * 120.32295 * 2 1 4 4 C 1.38586 * 118.48830 * 179.76822 * 3 2 1 5 5 C 1.39316 * 119.05908 * 0.49012 * 4 3 2 6 6 C 1.48165 * 119.72194 * 179.77547 * 5 4 3 7 7 O 1.21513 * 120.00362 * 352.46080 * 6 5 4 8 8 N 1.34777 * 119.99821 * 172.46542 * 6 5 4 9 9 C 1.44963 * 117.33871 * 0.02576 * 8 6 5 10 10 C 1.51965 * 111.93829 * 203.73509 * 9 8 6 11 11 O 1.41316 * 111.60545 * 319.69032 * 10 9 8 12 12 C 1.40311 * 117.96348 * 57.08387 * 11 10 9 13 13 H 1.08992 * 109.02296 * 187.28282 * 12 11 10 14 14 C 1.53927 * 110.67247 * 67.92466 * 12 11 10 15 15 N 1.46772 * 107.62039 * 221.16436 * 14 12 11 16 16 C 1.36943 * 125.36039 * 178.66646 * 15 14 12 17 17 H 1.07991 * 119.99960 * 155.53430 * 16 15 14 18 18 C 1.38813 * 119.99825 * 335.52981 * 16 15 14 19 19 N 1.31618 * 119.99487 * 154.79760 * 18 16 15 20 20 Si 1.86799 * 120.00200 * 334.79760 * 18 16 15 21 21 H 1.48503 * 109.46774 * 86.87968 * 20 18 16 22 22 H 1.48499 * 109.47040 * 326.87926 * 20 18 16 23 23 H 1.48495 * 109.47111 * 206.87551 * 20 18 16 24 24 C 1.46871 * 109.27417 * 358.40349 * 15 14 12 25 25 C 1.44547 * 117.33850 * 180.02562 * 8 6 5 26 26 H 1.09005 * 109.64460 * 285.98443 * 25 8 6 27 27 N 1.32711 * 120.55023 * 359.49655 * 5 4 3 28 28 C 1.31523 * 121.64648 * 0.25628 * 27 5 4 29 29 C 1.50701 * 119.55189 * 180.02562 * 28 27 5 30 30 H 1.08998 * 109.47893 * 269.98669 * 1 2 3 31 31 H 1.09000 * 109.46955 * 29.98576 * 1 2 3 32 32 H 1.09002 * 109.47138 * 149.98026 * 1 2 3 33 33 H 1.08005 * 120.75904 * 0.02562 * 3 2 1 34 34 H 1.08002 * 120.47523 * 180.26008 * 4 3 2 35 35 H 1.09008 * 108.98216 * 324.36231 * 9 8 6 36 36 H 1.08996 * 108.99105 * 83.17361 * 9 8 6 37 37 H 1.09001 * 109.05131 * 80.24322 * 10 9 8 38 38 H 1.09000 * 109.04817 * 199.21936 * 10 9 8 39 39 H 1.09004 * 109.94701 * 101.57227 * 14 12 11 40 40 H 1.09001 * 109.70832 * 340.62050 * 14 12 11 41 41 H 0.97000 * 120.00433 * 5.36076 * 19 18 16 42 42 H 1.09000 * 110.06477 * 137.29186 * 24 15 14 43 43 H 1.08996 * 110.06690 * 258.81506 * 24 15 14 44 44 H 1.08997 * 109.47033 * 89.99687 * 29 28 27 45 45 H 1.09005 * 109.47187 * 209.99935 * 29 28 27 46 46 H 1.09000 * 109.46806 * 329.99395 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1966 0.0000 4 6 3.5920 1.1522 0.0049 5 6 4.2294 -0.0866 -0.0007 6 6 5.7096 -0.1511 -0.0006 7 8 6.3622 0.8653 -0.1337 8 7 6.3324 -1.3372 0.1470 9 6 5.4980 -2.5126 0.3007 10 6 6.2293 -3.6389 1.0121 11 8 7.5714 -3.7415 0.5817 12 6 8.3916 -2.6102 0.7095 13 1 9.3458 -2.8061 0.2205 14 6 8.6563 -2.2957 2.1929 15 7 8.5760 -0.8397 2.3596 16 6 8.7280 -0.1679 3.5432 17 1 9.0446 0.8646 3.5412 18 6 8.4751 -0.8141 4.7454 19 7 9.0596 -0.4011 5.8500 20 14 7.3054 -2.2696 4.7955 21 1 8.0533 -3.5163 4.4923 22 1 6.2330 -2.0778 3.7863 23 1 6.7002 -2.3720 6.1476 24 6 8.3132 -0.2163 1.0559 25 6 7.7778 -1.3336 0.1392 26 1 8.1384 -1.1766 -0.8774 27 7 3.5217 -1.2093 -0.0007 28 6 2.2066 -1.1960 -0.0003 29 6 1.4501 -2.4994 0.0003 30 1 -0.3635 -0.0002 1.0276 31 1 -0.3633 0.8901 -0.5136 32 1 -0.3633 -0.8898 -0.5141 33 1 1.6846 2.1420 0.0004 34 1 4.1693 2.0650 0.0093 35 1 4.6119 -2.2456 0.8767 36 1 5.1886 -2.8593 -0.6852 37 1 6.2132 -3.4513 2.0857 38 1 5.7183 -4.5798 0.8078 39 1 9.6489 -2.6460 2.4760 40 1 7.9015 -2.7808 2.8119 41 1 9.6052 0.4008 5.8395 42 1 7.5665 0.5708 1.1615 43 1 9.2353 0.1950 0.6454 44 1 1.2681 -2.8133 1.0281 45 1 0.4978 -2.3672 -0.5133 46 1 2.0374 -3.2605 -0.5135 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083144501.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:15 Heat of formation + Delta-G solvation = 4.877426 kcal Electronic energy + Delta-G solvation = -30271.852913 eV Core-core repulsion = 26356.066732 eV Total energy + Delta-G solvation = -3915.786181 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.60135 -41.32535 -39.77144 -37.85975 -36.44072 -35.07873 -34.43243 -34.03438 -32.11653 -29.95739 -29.69230 -29.20403 -28.13831 -26.12877 -25.02529 -24.17887 -23.41012 -22.34572 -21.71507 -20.50209 -19.54312 -18.91316 -18.64021 -17.73662 -17.38627 -17.04156 -16.65814 -16.36842 -16.07426 -15.97206 -15.79475 -15.64021 -15.41747 -15.02232 -14.82540 -14.32392 -14.23200 -14.05320 -13.77779 -13.69635 -13.62697 -13.32585 -13.14658 -13.02887 -12.87893 -12.80619 -12.78312 -12.43333 -12.22248 -11.91782 -11.70534 -11.45069 -11.13206 -10.91129 -10.78066 -10.61099 -10.05921 -9.85465 -9.59030 -9.24711 -8.65500 -5.62926 -0.44641 0.16818 1.24143 1.36655 1.52948 1.57489 1.70957 2.37397 2.57485 2.71180 2.87137 2.97616 3.24361 3.36652 3.50143 3.60185 3.75644 3.84568 3.85635 3.92110 3.99498 4.10354 4.12888 4.17452 4.35043 4.47813 4.56446 4.67823 4.69150 4.70730 4.77164 4.79147 4.88481 4.90247 4.93044 4.95403 4.98110 5.07641 5.18073 5.24522 5.27550 5.52489 5.60658 5.71901 6.03740 6.06892 6.24266 6.64547 6.73757 6.96626 7.35384 8.03521 8.71136 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.013424 B = 0.004552 C = 0.004421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.342784 B = 6149.646853 C = 6331.354279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.106 4.106 3 C -0.080 4.080 4 C -0.125 4.125 5 C 0.048 3.952 6 C 0.551 3.449 7 O -0.558 6.558 8 N -0.575 5.575 9 C 0.078 3.922 10 C 0.038 3.962 11 O -0.361 6.361 12 C 0.101 3.899 13 H 0.149 0.851 14 C 0.083 3.917 15 N -0.618 5.618 16 C -0.323 4.323 17 H 0.033 0.967 18 C -0.063 4.063 19 N -0.945 5.945 20 Si 1.106 2.894 21 H -0.267 1.267 22 H -0.282 1.282 23 H -0.297 1.297 24 C 0.105 3.895 25 C 0.114 3.886 26 H 0.103 0.897 27 N -0.458 5.458 28 C 0.106 3.894 29 C -0.105 4.105 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.172 0.828 34 H 0.136 0.864 35 H 0.124 0.876 36 H 0.091 0.909 37 H 0.027 0.973 38 H 0.152 0.848 39 H 0.040 0.960 40 H 0.025 0.975 41 H 0.251 0.749 42 H 0.063 0.937 43 H 0.033 0.967 44 H 0.089 0.911 45 H 0.107 0.893 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.125 -6.625 -17.303 28.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.108 4.108 3 C -0.105 4.105 4 C -0.146 4.146 5 C -0.088 4.088 6 C 0.340 3.660 7 O -0.437 6.437 8 N -0.306 5.306 9 C -0.044 4.044 10 C -0.038 4.038 11 O -0.278 6.278 12 C 0.042 3.958 13 H 0.167 0.833 14 C -0.041 4.041 15 N -0.346 5.346 16 C -0.452 4.452 17 H 0.051 0.949 18 C -0.258 4.258 19 N -0.587 5.587 20 Si 0.934 3.066 21 H -0.193 1.193 22 H -0.208 1.208 23 H -0.225 1.225 24 C -0.020 4.020 25 C 0.009 3.991 26 H 0.120 0.880 27 N -0.172 5.172 28 C -0.035 4.035 29 C -0.162 4.162 30 H 0.107 0.893 31 H 0.103 0.897 32 H 0.114 0.886 33 H 0.190 0.810 34 H 0.154 0.846 35 H 0.141 0.859 36 H 0.109 0.891 37 H 0.045 0.955 38 H 0.170 0.830 39 H 0.058 0.942 40 H 0.042 0.958 41 H 0.060 0.940 42 H 0.081 0.919 43 H 0.051 0.949 44 H 0.108 0.892 45 H 0.125 0.875 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -21.798 -8.214 -16.409 28.494 hybrid contribution 1.182 3.155 -0.207 3.376 sum -20.616 -5.058 -16.617 26.958 Atomic orbital electron populations 1.20993 0.86760 1.05156 1.04112 1.21424 0.99841 0.92646 0.96898 1.21866 0.92139 1.00410 0.96092 1.22146 0.96533 0.97919 0.97975 1.20820 0.92696 0.91249 1.04021 1.18542 0.87366 0.83138 0.76935 1.90666 1.66394 1.35484 1.51163 1.46727 1.05735 1.08312 1.69854 1.22617 0.94000 0.84275 1.03538 1.22879 0.82176 1.01404 0.97357 1.86851 1.22184 1.34603 1.84162 1.22367 0.95107 0.84688 0.93671 0.83320 1.22368 0.99216 0.85517 0.97036 1.44534 1.84313 1.01776 1.03974 1.19799 1.43162 0.97547 0.84675 0.94910 1.27176 1.00552 1.07270 0.90848 1.71018 1.32714 1.24198 1.30777 0.83200 0.75601 0.73696 0.74148 1.19348 1.20845 1.22480 1.22177 0.98152 0.96359 0.85295 1.21642 0.80298 0.96943 1.00208 0.87980 1.67869 1.08844 1.28371 1.12088 1.22061 0.88878 0.97583 0.94935 1.20946 0.99968 0.90877 1.04406 0.89310 0.89662 0.88631 0.81035 0.84579 0.85870 0.89115 0.95512 0.83024 0.94169 0.95777 0.93971 0.91884 0.94929 0.89208 0.87472 0.90061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 9.62 71.24 0.69 -0.05 16 2 C -0.11 -1.62 5.91 -19.70 -0.12 -1.74 16 3 C -0.08 -1.45 9.85 22.45 0.22 -1.23 16 4 C -0.12 -3.35 9.63 22.61 0.22 -3.13 16 5 C 0.05 1.50 6.54 41.91 0.27 1.78 16 6 C 0.55 21.11 7.08 86.88 0.62 21.73 16 7 O -0.56 -24.45 13.35 -3.76 -0.05 -24.50 16 8 N -0.58 -20.84 3.09 -809.56 -2.50 -23.34 16 9 C 0.08 2.26 5.07 86.33 0.44 2.70 16 10 C 0.04 1.10 6.71 71.64 0.48 1.58 16 11 O -0.36 -11.55 10.26 -142.76 -1.46 -13.01 16 12 C 0.10 3.60 3.76 30.81 0.12 3.72 16 13 H 0.15 4.40 8.14 -2.39 -0.02 4.38 16 14 C 0.08 3.84 5.46 86.64 0.47 4.32 16 15 N -0.62 -33.20 3.10 -696.38 -2.16 -35.36 16 16 C -0.32 -20.38 10.34 84.03 0.87 -19.51 16 17 H 0.03 2.26 8.06 -2.92 -0.02 2.24 16 18 C -0.06 -3.94 5.40 84.86 0.46 -3.48 16 19 N -0.94 -62.94 13.70 21.65 0.30 -62.64 16 20 Si 1.11 57.27 24.70 68.60 1.69 58.97 16 21 H -0.27 -12.75 6.78 99.48 0.67 -12.07 16 22 H -0.28 -13.94 6.42 99.48 0.64 -13.30 16 23 H -0.30 -15.19 7.11 99.48 0.71 -14.49 16 24 C 0.11 4.98 6.29 86.69 0.55 5.52 16 25 C 0.11 4.29 3.40 45.64 0.16 4.44 16 26 H 0.10 3.39 8.14 -2.38 -0.02 3.37 16 27 N -0.46 -11.80 5.68 -173.08 -0.98 -12.78 16 28 C 0.11 1.95 6.78 42.68 0.29 2.24 16 29 C -0.11 -1.06 9.77 71.24 0.70 -0.37 16 30 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.08 0.36 8.09 -2.39 -0.02 0.35 16 32 H 0.10 0.30 5.95 -2.39 -0.01 0.28 16 33 H 0.17 1.93 8.06 -2.91 -0.02 1.91 16 34 H 0.14 3.84 7.66 -2.91 -0.02 3.81 16 35 H 0.12 3.67 5.05 -19.47 -0.10 3.57 16 36 H 0.09 2.24 8.01 -2.39 -0.02 2.22 16 37 H 0.03 0.92 5.75 -2.39 -0.01 0.91 16 38 H 0.15 2.93 8.14 -2.39 -0.02 2.91 16 39 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 40 H 0.02 1.18 1.83 -2.39 0.00 1.17 16 41 H 0.25 16.80 8.73 -92.71 -0.81 15.99 16 42 H 0.06 3.34 4.89 -3.65 -0.02 3.33 16 43 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.11 0.47 5.94 -2.38 -0.01 0.46 16 46 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -83.70 348.95 2.03 -81.67 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 0.78 Total: 12.47 kcal Atomic # 6 Polarization: 12.10 SS G_CDS: 6.42 Total: 18.52 kcal Atomic # 7 Polarization: -128.76 SS G_CDS: -5.35 Total: -134.11 kcal Atomic # 8 Polarization: -36.00 SS G_CDS: -1.51 Total: -37.51 kcal Atomic # 14 Polarization: 57.27 SS G_CDS: 1.69 Total: 58.97 kcal Total: -83.70 2.03 -81.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083144501.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.543 kcal (2) G-P(sol) polarization free energy of solvation -83.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds