Wall clock time and date at job start Tue Mar 31 2020 17:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38593 * 120.32787 * 2 1 4 4 N 1.31496 * 120.90519 * 179.97438 * 3 2 1 5 5 C 1.32748 * 121.63891 * 0.02691 * 4 3 2 6 6 C 1.48171 * 119.72027 * 179.97438 * 5 4 3 7 7 O 1.21516 * 119.99632 * 172.16394 * 6 5 4 8 8 N 1.34777 * 120.00164 * 352.16449 * 6 5 4 9 9 C 1.44959 * 117.32030 * 1.60197 * 8 6 5 10 10 C 1.51780 * 111.99680 * 203.54175 * 9 8 6 11 11 O 1.41326 * 111.63513 * 319.67506 * 10 9 8 12 12 C 1.40788 * 118.39896 * 56.76585 * 11 10 9 13 13 H 1.08996 * 109.34611 * 188.31394 * 12 11 10 14 14 C 1.54197 * 110.22724 * 67.70323 * 12 11 10 15 15 N 1.46879 * 106.39146 * 210.33713 * 14 12 11 16 16 C 1.36939 * 125.36274 * 197.82297 * 15 14 12 17 17 H 1.07998 * 120.00100 * 180.02562 * 16 15 14 18 18 C 1.38817 * 119.99794 * 0.02562 * 16 15 14 19 19 N 1.31620 * 120.00320 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99868 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46986 * 89.99784 * 20 18 16 22 22 H 1.48499 * 109.47181 * 210.00027 * 20 18 16 23 23 H 1.48504 * 109.47032 * 330.00273 * 20 18 16 24 24 C 1.46785 * 109.27210 * 17.84165 * 15 14 12 25 25 C 1.44535 * 117.32456 * 181.86927 * 8 6 5 26 26 H 1.09004 * 109.48364 * 285.85252 * 25 8 6 27 27 C 1.39271 * 120.55634 * 359.97438 * 5 4 3 28 28 C 1.38583 * 120.32102 * 179.97438 * 2 1 3 29 29 C 1.50708 * 120.75760 * 0.04124 * 28 2 1 30 30 H 1.09000 * 109.47155 * 89.99462 * 1 2 3 31 31 H 1.08995 * 109.47661 * 209.99663 * 1 2 3 32 32 H 1.09000 * 109.46883 * 329.99641 * 1 2 3 33 33 H 1.08000 * 119.54776 * 359.97438 * 3 2 1 34 34 H 1.09001 * 109.00604 * 324.33258 * 9 8 6 35 35 H 1.09005 * 109.00069 * 83.09684 * 9 8 6 36 36 H 1.09004 * 109.15597 * 199.02465 * 10 9 8 37 37 H 1.08996 * 108.82079 * 80.10257 * 10 9 8 38 38 H 1.08997 * 110.07344 * 91.10355 * 14 12 11 39 39 H 1.08996 * 110.12231 * 329.59285 * 14 12 11 40 40 H 0.96999 * 119.99828 * 180.02562 * 19 18 16 41 41 H 1.09001 * 109.82695 * 239.35606 * 24 15 14 42 42 H 1.08996 * 109.82847 * 118.39398 * 24 15 14 43 43 H 1.07995 * 120.46995 * 179.97438 * 27 5 4 44 44 H 1.09003 * 109.46904 * 90.00255 * 29 28 2 45 45 H 1.09000 * 109.47179 * 210.00242 * 29 28 2 46 46 H 1.08997 * 109.46696 * 330.00374 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1963 0.0000 4 7 3.5217 1.2095 0.0005 5 6 4.2294 0.0864 0.0005 6 6 5.7097 0.1509 0.0005 7 8 6.3620 -0.8642 0.1440 8 7 6.3326 1.3355 -0.1586 9 6 5.4983 2.5137 -0.2892 10 6 6.2153 3.6410 -1.0096 11 8 7.5665 3.7400 -0.6075 12 6 8.3917 2.6080 -0.7484 13 1 9.3495 2.7968 -0.2636 14 6 8.6189 2.2964 -2.2414 15 7 8.7985 0.8419 -2.3386 16 6 9.3573 0.1814 -3.4001 17 1 9.4466 -0.8946 -3.3802 18 6 9.8088 0.8952 -4.5018 19 7 9.7004 2.2067 -4.5258 20 14 10.5705 -0.0058 -5.9502 21 1 9.5089 -0.3598 -6.9265 22 1 11.5740 0.8706 -6.6061 23 1 11.2338 -1.2443 -5.4693 24 6 8.2843 0.2077 -1.1187 25 6 7.7776 1.3261 -0.1909 26 1 8.1627 1.1650 0.8160 27 6 3.5922 -1.1520 0.0005 28 6 2.2066 -1.1963 0.0005 29 6 1.4778 -2.5154 0.0002 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3634 -0.8899 0.5137 32 1 -0.3633 0.8900 0.5139 33 1 1.6648 2.1304 -0.0004 34 1 4.5982 2.2514 -0.8452 35 1 5.2121 2.8578 0.7047 36 1 5.7096 4.5822 -0.7936 37 1 6.1759 3.4538 -2.0826 38 1 9.5124 2.8083 -2.5987 39 1 7.7521 2.6060 -2.8252 40 1 10.0156 2.7053 -5.2958 41 1 9.0823 -0.3481 -0.6264 42 1 7.4639 -0.4649 -1.3693 43 1 4.1693 -2.0648 0.0001 44 1 1.3028 -2.8335 -1.0276 45 1 2.0807 -3.2638 0.5145 46 1 0.5228 -2.4029 0.5134 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083150381.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:54 Heat of formation + Delta-G solvation = 25.532397 kcal Electronic energy + Delta-G solvation = -29605.774970 eV Core-core repulsion = 25690.884455 eV Total energy + Delta-G solvation = -3914.890515 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.24935 -40.04129 -38.17702 -35.90491 -35.24307 -34.33281 -32.67681 -32.21709 -29.92000 -28.89441 -27.97848 -27.75953 -26.78725 -24.65633 -23.29300 -22.93869 -22.84884 -20.88833 -19.77272 -18.63223 -17.57907 -17.21295 -16.71356 -16.50722 -15.79218 -15.47911 -15.32068 -14.83876 -14.78743 -14.67158 -14.41709 -14.00369 -13.80545 -13.41593 -13.26979 -13.20228 -13.03287 -12.90927 -12.76579 -12.37966 -12.22650 -12.05561 -11.91619 -11.75894 -11.31687 -11.03748 -10.84897 -10.60320 -10.37260 -10.32237 -10.05993 -9.85745 -9.70062 -9.59912 -9.29829 -9.10589 -8.71941 -8.56143 -8.10626 -6.76527 -5.63482 -3.01963 0.52723 0.99143 2.77631 3.07623 3.43130 3.47904 3.50366 3.72299 3.96852 4.26855 4.37108 4.42616 4.53375 4.57442 4.59789 4.91625 5.09776 5.11238 5.16411 5.25256 5.28492 5.33257 5.40280 5.45416 5.51361 5.59512 5.61609 5.63986 5.70127 5.79693 5.82238 5.90241 6.02243 6.11939 6.16774 6.22877 6.35464 6.47320 6.68080 6.85086 7.18951 7.43408 7.46297 7.61497 7.66335 7.80139 7.98482 8.31783 8.38872 9.26242 9.86624 10.49735 11.43163 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.014307 B = 0.003664 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.668891 B = 7641.014179 C = 8511.128248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.123 4.123 3 C 0.093 3.907 4 N -0.450 5.450 5 C 0.082 3.918 6 C 0.558 3.442 7 O -0.523 6.523 8 N -0.564 5.564 9 C 0.071 3.929 10 C 0.053 3.947 11 O -0.373 6.373 12 C 0.070 3.930 13 H 0.113 0.887 14 C 0.140 3.860 15 N -0.603 5.603 16 C -0.221 4.221 17 H 0.079 0.921 18 C -0.011 4.011 19 N -0.923 5.923 20 Si 0.914 3.086 21 H -0.290 1.290 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.128 3.872 25 C 0.108 3.892 26 H 0.072 0.928 27 C -0.106 4.106 28 C -0.052 4.052 29 C -0.118 4.118 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.162 0.838 34 H 0.126 0.874 35 H 0.064 0.936 36 H 0.101 0.899 37 H 0.054 0.946 38 H 0.099 0.901 39 H 0.022 0.978 40 H 0.252 0.748 41 H 0.035 0.965 42 H 0.053 0.947 43 H 0.148 0.852 44 H 0.079 0.921 45 H 0.074 0.926 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.971 -1.482 11.416 23.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.125 4.125 3 C -0.066 4.066 4 N -0.162 5.162 5 C -0.055 4.055 6 C 0.345 3.655 7 O -0.400 6.400 8 N -0.296 5.296 9 C -0.052 4.052 10 C -0.024 4.024 11 O -0.290 6.290 12 C 0.011 3.989 13 H 0.130 0.870 14 C 0.015 3.985 15 N -0.331 5.331 16 C -0.349 4.349 17 H 0.097 0.903 18 C -0.207 4.207 19 N -0.572 5.572 20 Si 0.745 3.255 21 H -0.217 1.217 22 H -0.216 1.216 23 H -0.206 1.206 24 C 0.003 3.997 25 C 0.004 3.996 26 H 0.090 0.910 27 C -0.127 4.127 28 C -0.060 4.060 29 C -0.175 4.175 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.179 0.821 34 H 0.143 0.857 35 H 0.083 0.917 36 H 0.119 0.881 37 H 0.072 0.928 38 H 0.117 0.883 39 H 0.039 0.961 40 H 0.062 0.938 41 H 0.053 0.947 42 H 0.071 0.929 43 H 0.166 0.834 44 H 0.098 0.902 45 H 0.093 0.907 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.922 -0.969 11.376 22.099 hybrid contribution -0.221 -1.323 -0.953 1.645 sum -19.142 -2.292 10.422 21.916 Atomic orbital electron populations 1.20814 0.90062 1.03339 1.02875 1.20981 0.97650 0.93668 1.00235 1.22869 0.89897 0.97654 0.96203 1.68185 1.07842 1.28979 1.11206 1.21225 0.94424 0.89659 1.00170 1.17961 0.85702 0.83757 0.78117 1.90771 1.65403 1.34335 1.49455 1.46629 1.06155 1.07178 1.69620 1.22501 0.94803 0.85614 1.02312 1.22370 0.82654 0.98407 0.99000 1.86827 1.20562 1.36214 1.85416 1.23028 0.92458 0.83216 1.00230 0.86976 1.22059 1.02270 0.85672 0.88538 1.44272 1.70967 1.01909 1.15966 1.19082 1.31292 0.91096 0.93413 0.90346 1.24796 1.01664 0.95772 0.98421 1.69875 1.52575 1.04633 1.30109 0.86072 0.78628 0.78415 0.82403 1.21735 1.21645 1.20634 1.21683 0.97215 0.93493 0.87354 1.21637 0.78906 0.99087 0.99994 0.90991 1.21982 0.94092 0.99101 0.97513 1.20198 0.93226 0.95864 0.96682 1.20885 1.00334 0.93058 1.03192 0.90534 0.90884 0.90974 0.82111 0.85674 0.91741 0.88147 0.92789 0.88348 0.96054 0.93762 0.94726 0.92900 0.83425 0.90226 0.90746 0.90607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.60 9.65 36.00 0.35 -0.25 16 2 C -0.12 -1.08 5.91 -104.36 -0.62 -1.70 16 3 C 0.09 0.91 10.86 -17.56 -0.19 0.72 16 4 N -0.45 -5.88 5.77 -9.80 -0.06 -5.94 16 5 C 0.08 1.24 6.55 -83.01 -0.54 0.70 16 6 C 0.56 10.33 6.91 -12.18 -0.08 10.25 16 7 O -0.52 -10.85 13.64 5.35 0.07 -10.77 16 8 N -0.56 -10.47 3.09 -170.11 -0.53 -10.99 16 9 C 0.07 1.11 5.09 -5.49 -0.03 1.08 16 10 C 0.05 0.86 6.73 36.54 0.25 1.11 16 11 O -0.37 -7.14 10.25 -34.36 -0.35 -7.49 16 12 C 0.07 1.45 3.91 -26.27 -0.10 1.35 16 13 H 0.11 2.19 8.14 -51.93 -0.42 1.76 16 14 C 0.14 3.56 5.26 -3.21 -0.02 3.55 16 15 N -0.60 -16.36 3.39 -171.42 -0.58 -16.94 16 16 C -0.22 -6.43 10.25 -15.06 -0.15 -6.58 16 17 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 18 C -0.01 -0.32 5.48 -17.43 -0.10 -0.42 16 19 N -0.92 -27.60 10.18 55.49 0.56 -27.04 16 20 Si 0.91 22.72 29.55 -169.99 -5.02 17.70 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 C 0.13 3.04 6.05 -3.42 -0.02 3.02 16 25 C 0.11 2.19 3.30 -68.67 -0.23 1.96 16 26 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 27 C -0.11 -1.37 9.34 -39.05 -0.36 -1.74 16 28 C -0.05 -0.51 5.91 -104.35 -0.62 -1.13 16 29 C -0.12 -0.80 9.67 36.01 0.35 -0.45 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.32 6.06 -51.93 -0.31 0.00 16 32 H 0.07 0.29 8.09 -51.93 -0.42 -0.13 16 33 H 0.16 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.13 1.89 4.94 -65.48 -0.32 1.56 16 35 H 0.06 0.93 8.05 -51.93 -0.42 0.51 16 36 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.05 0.99 6.73 -51.93 -0.35 0.64 16 38 H 0.10 2.79 6.24 -51.93 -0.32 2.46 16 39 H 0.02 0.59 6.48 -51.93 -0.34 0.26 16 40 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.05 1.34 5.36 -51.93 -0.28 1.06 16 43 H 0.15 1.91 7.66 -52.49 -0.40 1.50 16 44 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.07 0.48 8.10 -51.93 -0.42 0.06 16 46 H 0.08 0.37 6.07 -51.93 -0.32 0.06 16 LS Contribution 354.92 15.07 5.35 5.35 Total: -1.00 -34.22 354.92 -9.08 -43.30 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -6.41 Total: 1.37 kcal Atomic # 6 Polarization: 13.58 SS G_CDS: -2.12 Total: 11.46 kcal Atomic # 7 Polarization: -60.31 SS G_CDS: -0.60 Total: -60.91 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.28 Total: -18.27 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.22 -9.08 -43.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083150381.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.833 kcal (2) G-P(sol) polarization free energy of solvation -34.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds