Wall clock time and date at job start Tue Mar 31 2020 17:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38593 * 120.32787 * 2 1 4 4 N 1.31496 * 120.90519 * 179.97438 * 3 2 1 5 5 C 1.32748 * 121.63891 * 0.02691 * 4 3 2 6 6 C 1.48171 * 119.72027 * 179.97438 * 5 4 3 7 7 O 1.21516 * 119.99632 * 172.16394 * 6 5 4 8 8 N 1.34777 * 120.00164 * 352.16449 * 6 5 4 9 9 C 1.44959 * 117.32030 * 1.60197 * 8 6 5 10 10 C 1.51780 * 111.99680 * 203.54175 * 9 8 6 11 11 O 1.41326 * 111.63513 * 319.67506 * 10 9 8 12 12 C 1.40788 * 118.39896 * 56.76585 * 11 10 9 13 13 H 1.08996 * 109.34611 * 188.31394 * 12 11 10 14 14 C 1.54197 * 110.22724 * 67.70323 * 12 11 10 15 15 N 1.46879 * 106.39146 * 210.33713 * 14 12 11 16 16 C 1.36939 * 125.36274 * 197.82297 * 15 14 12 17 17 H 1.07998 * 120.00100 * 180.02562 * 16 15 14 18 18 C 1.38817 * 119.99794 * 0.02562 * 16 15 14 19 19 N 1.31620 * 120.00320 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99868 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46986 * 89.99784 * 20 18 16 22 22 H 1.48499 * 109.47181 * 210.00027 * 20 18 16 23 23 H 1.48504 * 109.47032 * 330.00273 * 20 18 16 24 24 C 1.46785 * 109.27210 * 17.84165 * 15 14 12 25 25 C 1.44535 * 117.32456 * 181.86927 * 8 6 5 26 26 H 1.09004 * 109.48364 * 285.85252 * 25 8 6 27 27 C 1.39271 * 120.55634 * 359.97438 * 5 4 3 28 28 C 1.38583 * 120.32102 * 179.97438 * 2 1 3 29 29 C 1.50708 * 120.75760 * 0.04124 * 28 2 1 30 30 H 1.09000 * 109.47155 * 89.99462 * 1 2 3 31 31 H 1.08995 * 109.47661 * 209.99663 * 1 2 3 32 32 H 1.09000 * 109.46883 * 329.99641 * 1 2 3 33 33 H 1.08000 * 119.54776 * 359.97438 * 3 2 1 34 34 H 1.09001 * 109.00604 * 324.33258 * 9 8 6 35 35 H 1.09005 * 109.00069 * 83.09684 * 9 8 6 36 36 H 1.09004 * 109.15597 * 199.02465 * 10 9 8 37 37 H 1.08996 * 108.82079 * 80.10257 * 10 9 8 38 38 H 1.08997 * 110.07344 * 91.10355 * 14 12 11 39 39 H 1.08996 * 110.12231 * 329.59285 * 14 12 11 40 40 H 0.96999 * 119.99828 * 180.02562 * 19 18 16 41 41 H 1.09001 * 109.82695 * 239.35606 * 24 15 14 42 42 H 1.08996 * 109.82847 * 118.39398 * 24 15 14 43 43 H 1.07995 * 120.46995 * 179.97438 * 27 5 4 44 44 H 1.09003 * 109.46904 * 90.00255 * 29 28 2 45 45 H 1.09000 * 109.47179 * 210.00242 * 29 28 2 46 46 H 1.08997 * 109.46696 * 330.00374 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1963 0.0000 4 7 3.5217 1.2095 0.0005 5 6 4.2294 0.0864 0.0005 6 6 5.7097 0.1509 0.0005 7 8 6.3620 -0.8642 0.1440 8 7 6.3326 1.3355 -0.1586 9 6 5.4983 2.5137 -0.2892 10 6 6.2153 3.6410 -1.0096 11 8 7.5665 3.7400 -0.6075 12 6 8.3917 2.6080 -0.7484 13 1 9.3495 2.7968 -0.2636 14 6 8.6189 2.2964 -2.2414 15 7 8.7985 0.8419 -2.3386 16 6 9.3573 0.1814 -3.4001 17 1 9.4466 -0.8946 -3.3802 18 6 9.8088 0.8952 -4.5018 19 7 9.7004 2.2067 -4.5258 20 14 10.5705 -0.0058 -5.9502 21 1 9.5089 -0.3598 -6.9265 22 1 11.5740 0.8706 -6.6061 23 1 11.2338 -1.2443 -5.4693 24 6 8.2843 0.2077 -1.1187 25 6 7.7776 1.3261 -0.1909 26 1 8.1627 1.1650 0.8160 27 6 3.5922 -1.1520 0.0005 28 6 2.2066 -1.1963 0.0005 29 6 1.4778 -2.5154 0.0002 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3634 -0.8899 0.5137 32 1 -0.3633 0.8900 0.5139 33 1 1.6648 2.1304 -0.0004 34 1 4.5982 2.2514 -0.8452 35 1 5.2121 2.8578 0.7047 36 1 5.7096 4.5822 -0.7936 37 1 6.1759 3.4538 -2.0826 38 1 9.5124 2.8083 -2.5987 39 1 7.7521 2.6060 -2.8252 40 1 10.0156 2.7053 -5.2958 41 1 9.0823 -0.3481 -0.6264 42 1 7.4639 -0.4649 -1.3693 43 1 4.1693 -2.0648 0.0001 44 1 1.3028 -2.8335 -1.0276 45 1 2.0807 -3.2638 0.5145 46 1 0.5228 -2.4029 0.5134 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083150381.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:53 Heat of formation + Delta-G solvation = 2.663024 kcal Electronic energy + Delta-G solvation = -29606.766660 eV Core-core repulsion = 25690.884455 eV Total energy + Delta-G solvation = -3915.882205 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.50630 -41.21934 -39.63018 -37.70234 -36.48576 -35.46135 -34.25796 -33.39921 -31.72110 -29.87507 -29.54105 -29.02916 -27.96320 -26.56577 -24.70156 -24.10805 -23.75566 -22.53162 -21.26913 -20.15358 -19.13593 -18.67294 -18.29502 -17.79904 -17.12966 -16.89339 -16.63415 -16.19673 -16.12249 -15.88496 -15.67824 -15.45403 -15.24171 -14.93928 -14.49667 -14.23096 -14.10059 -13.83323 -13.75197 -13.69725 -13.60714 -13.44492 -13.08961 -12.96199 -12.82975 -12.52257 -12.44825 -12.33043 -12.16626 -12.11963 -11.87680 -11.74690 -11.17179 -10.84224 -10.73193 -10.52397 -10.04139 -9.90309 -9.56056 -8.95230 -7.86128 -5.29209 -0.42434 0.17293 1.42088 1.44739 1.54098 1.56597 1.73466 2.43974 2.67170 2.76534 2.98379 3.26105 3.36711 3.61827 3.70449 3.73931 3.75155 3.86246 3.89100 3.98092 4.06521 4.16050 4.25342 4.34460 4.44392 4.52373 4.61531 4.63705 4.69468 4.74303 4.85928 4.90002 4.92532 4.95468 5.01110 5.04220 5.13058 5.24641 5.34611 5.37924 5.44459 5.57391 5.64302 5.72908 6.11428 6.17001 6.37930 6.66115 6.97897 7.04644 7.68616 8.30876 9.18375 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.014307 B = 0.003664 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.668891 B = 7641.014179 C = 8511.128248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.108 4.108 3 C 0.090 3.910 4 N -0.462 5.462 5 C 0.050 3.950 6 C 0.550 3.450 7 O -0.560 6.560 8 N -0.574 5.574 9 C 0.075 3.925 10 C 0.048 3.952 11 O -0.374 6.374 12 C 0.086 3.914 13 H 0.127 0.873 14 C 0.152 3.848 15 N -0.621 5.621 16 C -0.248 4.248 17 H 0.076 0.924 18 C -0.061 4.061 19 N -0.947 5.947 20 Si 0.984 3.016 21 H -0.286 1.286 22 H -0.287 1.287 23 H -0.270 1.270 24 C 0.131 3.869 25 C 0.117 3.883 26 H 0.088 0.912 27 C -0.119 4.119 28 C -0.055 4.055 29 C -0.117 4.117 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.199 0.801 34 H 0.135 0.865 35 H 0.085 0.915 36 H 0.145 0.855 37 H 0.027 0.973 38 H 0.067 0.933 39 H -0.008 1.008 40 H 0.250 0.750 41 H 0.030 0.970 42 H 0.035 0.965 43 H 0.135 0.865 44 H 0.087 0.913 45 H 0.073 0.927 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.162 -1.132 12.162 26.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.110 4.110 3 C -0.070 4.070 4 N -0.175 5.175 5 C -0.085 4.085 6 C 0.339 3.661 7 O -0.439 6.439 8 N -0.305 5.305 9 C -0.047 4.047 10 C -0.028 4.028 11 O -0.291 6.291 12 C 0.027 3.973 13 H 0.144 0.856 14 C 0.026 3.974 15 N -0.349 5.349 16 C -0.377 4.377 17 H 0.094 0.906 18 C -0.254 4.254 19 N -0.595 5.595 20 Si 0.812 3.188 21 H -0.213 1.213 22 H -0.213 1.213 23 H -0.195 1.195 24 C 0.006 3.994 25 C 0.012 3.988 26 H 0.106 0.894 27 C -0.140 4.140 28 C -0.063 4.063 29 C -0.173 4.173 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.110 0.890 33 H 0.215 0.785 34 H 0.152 0.848 35 H 0.103 0.897 36 H 0.162 0.838 37 H 0.045 0.955 38 H 0.085 0.915 39 H 0.010 0.990 40 H 0.059 0.941 41 H 0.048 0.952 42 H 0.053 0.947 43 H 0.152 0.848 44 H 0.106 0.894 45 H 0.092 0.908 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -22.135 -0.614 12.144 25.255 hybrid contribution 0.575 -1.436 -1.193 1.954 sum -21.560 -2.051 10.950 24.268 Atomic orbital electron populations 1.20948 0.86852 1.05092 1.04069 1.21460 0.99774 0.92642 0.97084 1.23543 0.88817 0.99732 0.94869 1.67980 1.09490 1.28138 1.11884 1.20756 0.92517 0.91218 1.04053 1.18582 0.87475 0.83076 0.76975 1.90723 1.66723 1.35356 1.51111 1.46779 1.05470 1.08403 1.69824 1.22675 0.94374 0.84190 1.03434 1.22681 0.81627 1.00983 0.97538 1.86831 1.21877 1.35247 1.85137 1.22749 0.93782 0.84096 0.96695 0.85568 1.21790 0.99377 0.84641 0.91570 1.44529 1.70958 1.02835 1.16542 1.19404 1.32137 0.91400 0.94709 0.90624 1.25674 1.02036 0.96661 1.00984 1.70115 1.52946 1.05926 1.30562 0.85003 0.77647 0.77534 0.78655 1.21310 1.21266 1.19476 1.21678 0.96357 0.94456 0.86934 1.21403 0.80578 0.97173 0.99619 0.89415 1.22020 0.95718 0.97925 0.98318 1.20572 0.91972 0.98035 0.95735 1.20977 1.01037 0.91265 1.04039 0.89304 0.89446 0.89028 0.78471 0.84828 0.89698 0.83753 0.95481 0.91540 0.99015 0.94076 0.95173 0.94683 0.84755 0.89425 0.90845 0.88044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 9.65 71.24 0.69 0.05 16 2 C -0.11 -1.52 5.91 -19.70 -0.12 -1.64 16 3 C 0.09 1.49 10.86 84.83 0.92 2.41 16 4 N -0.46 -11.44 5.77 -184.91 -1.07 -12.51 16 5 C 0.05 1.52 6.55 41.89 0.27 1.79 16 6 C 0.55 21.16 6.91 86.88 0.60 21.76 16 7 O -0.56 -24.62 13.64 -3.77 -0.05 -24.67 16 8 N -0.57 -21.63 3.09 -810.40 -2.51 -24.14 16 9 C 0.08 2.28 5.09 86.27 0.44 2.72 16 10 C 0.05 1.54 6.73 71.58 0.48 2.02 16 11 O -0.37 -14.15 10.25 -145.87 -1.50 -15.64 16 12 C 0.09 3.65 3.91 30.89 0.12 3.77 16 13 H 0.13 4.94 8.14 -2.39 -0.02 4.92 16 14 C 0.15 8.10 5.26 86.71 0.46 8.55 16 15 N -0.62 -35.29 3.39 -696.24 -2.36 -37.65 16 16 C -0.25 -15.03 10.25 84.03 0.86 -14.17 16 17 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 18 C -0.06 -3.60 5.48 84.86 0.47 -3.14 16 19 N -0.95 -58.51 10.18 21.65 0.22 -58.29 16 20 Si 0.98 47.64 29.55 68.60 2.03 49.67 16 21 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 22 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 23 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 24 C 0.13 6.53 6.05 86.63 0.52 7.05 16 25 C 0.12 4.87 3.30 45.56 0.15 5.02 16 26 H 0.09 3.37 8.14 -2.38 -0.02 3.35 16 27 C -0.12 -3.11 9.34 22.61 0.21 -2.90 16 28 C -0.06 -0.99 5.91 -19.69 -0.12 -1.11 16 29 C -0.12 -1.28 9.67 71.24 0.69 -0.59 16 30 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.09 0.30 6.06 -2.39 -0.01 0.29 16 32 H 0.09 0.24 8.09 -2.39 -0.02 0.22 16 33 H 0.20 1.70 8.06 -2.91 -0.02 1.68 16 34 H 0.14 3.91 4.94 -29.14 -0.14 3.77 16 35 H 0.08 2.26 8.05 -2.38 -0.02 2.24 16 36 H 0.14 3.30 8.14 -2.39 -0.02 3.28 16 37 H 0.03 1.01 6.73 -2.39 -0.02 0.99 16 38 H 0.07 3.96 6.24 -2.39 -0.01 3.94 16 39 H -0.01 -0.47 6.48 -2.39 -0.02 -0.48 16 40 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 41 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.04 1.89 5.36 -2.39 -0.01 1.88 16 43 H 0.13 3.74 7.66 -2.91 -0.02 3.71 16 44 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.07 0.83 8.10 -2.39 -0.02 0.81 16 46 H 0.10 0.59 6.07 -2.39 -0.01 0.57 16 Total: -1.00 -79.13 354.92 2.29 -76.84 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: 0.87 Total: 14.80 kcal Atomic # 6 Polarization: 24.95 SS G_CDS: 6.65 Total: 31.60 kcal Atomic # 7 Polarization: -126.88 SS G_CDS: -5.71 Total: -132.59 kcal Atomic # 8 Polarization: -38.76 SS G_CDS: -1.55 Total: -40.31 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 2.03 Total: 49.67 kcal Total: -79.13 2.29 -76.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083150381.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.499 kcal (2) G-P(sol) polarization free energy of solvation -79.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds