Wall clock time and date at job start Tue Mar 31 2020 17:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36397 * 120.34987 * 2 1 4 4 C 1.40190 * 119.27037 * 180.02562 * 3 2 1 5 5 C 1.35349 * 119.94913 * 359.97438 * 4 3 2 6 6 N 1.35765 * 120.69815 * 359.97438 * 5 4 3 7 7 C 1.46501 * 119.62386 * 180.02562 * 6 5 4 8 8 C 1.50704 * 109.46941 * 90.00497 * 7 6 5 9 9 O 1.21277 * 119.99811 * 359.97438 * 8 7 6 10 10 N 1.34781 * 119.99911 * 180.02562 * 8 7 6 11 11 C 1.47282 * 136.54276 * 359.97438 * 10 8 7 12 12 C 1.54082 * 87.60594 * 151.38976 * 11 10 8 13 13 H 1.09004 * 115.04257 * 141.62932 * 12 11 10 14 14 C 1.53064 * 111.39478 * 273.97515 * 12 11 10 15 15 C 1.52698 * 109.28541 * 142.28840 * 14 12 11 16 16 N 1.46539 * 108.48808 * 301.79530 * 15 14 12 17 17 C 1.36940 * 119.73544 * 236.40296 * 16 15 14 18 18 H 1.07999 * 120.00056 * 151.44698 * 17 16 15 19 19 C 1.38816 * 119.99822 * 331.44107 * 17 16 15 20 20 N 1.31619 * 119.99987 * 335.27247 * 19 17 16 21 21 Si 1.86798 * 119.99685 * 155.26722 * 19 17 16 22 22 H 1.48504 * 109.46983 * 180.02562 * 21 19 17 23 23 H 1.48500 * 109.47287 * 299.99918 * 21 19 17 24 24 H 1.48497 * 109.47286 * 60.00278 * 21 19 17 25 25 C 1.45703 * 120.52905 * 56.11877 * 16 15 14 26 26 C 1.46464 * 136.54296 * 179.97438 * 10 8 7 27 27 H 1.08998 * 111.43858 * 97.08944 * 26 10 8 28 28 C 1.34663 * 120.75406 * 0.29461 * 6 5 4 29 29 O 1.22056 * 119.98660 * 179.70090 * 28 6 5 30 30 H 1.09001 * 109.47322 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.46543 * 120.00478 * 1 2 3 32 32 H 1.08993 * 109.47294 * 239.99915 * 1 2 3 33 33 H 1.08005 * 120.36738 * 359.97438 * 3 2 1 34 34 H 1.08003 * 120.03228 * 180.02562 * 4 3 2 35 35 H 1.07992 * 119.65454 * 180.02562 * 5 4 3 36 36 H 1.09000 * 109.47378 * 330.00525 * 7 6 5 37 37 H 1.09002 * 109.47338 * 210.00210 * 7 6 5 38 38 H 1.08999 * 113.52935 * 266.07113 * 11 10 8 39 39 H 1.08997 * 113.53081 * 36.63705 * 11 10 8 40 40 H 1.08999 * 109.51364 * 262.32689 * 14 12 11 41 41 H 1.09004 * 109.51063 * 22.42664 * 14 12 11 42 42 H 1.08996 * 109.62147 * 182.01505 * 15 14 12 43 43 H 1.08998 * 109.55897 * 61.53232 * 15 14 12 44 44 H 0.97003 * 120.00057 * 354.28431 * 20 19 17 45 45 H 1.09004 * 108.78504 * 81.16479 * 25 16 15 46 46 H 1.08996 * 108.78821 * 199.48685 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1962 1.1770 0.0000 4 6 3.5979 1.1506 -0.0005 5 6 4.2513 -0.0346 -0.0005 6 7 3.5637 -1.2052 0.0005 7 6 4.2949 -2.4747 0.0011 8 6 4.5461 -2.9091 1.4221 9 8 4.1534 -2.2253 2.3436 10 7 5.2081 -4.0569 1.6689 11 6 5.8250 -5.1285 0.8688 12 6 6.8043 -5.3491 2.0378 13 1 7.0563 -6.3904 2.2383 14 6 8.0113 -4.4129 1.9393 15 6 8.4043 -3.9478 3.3396 16 7 7.2518 -3.2771 3.9471 17 6 7.3757 -1.9908 4.4004 18 1 6.5155 -1.3379 4.4144 19 6 8.6070 -1.5262 4.8422 20 7 9.5091 -2.3746 5.2880 21 14 8.9835 0.3030 4.8036 22 1 10.3545 0.5372 5.3240 23 1 8.8937 0.7976 3.4063 24 1 8.0019 1.0283 5.6495 25 6 5.9733 -3.9655 4.0670 26 6 5.6389 -4.8020 2.8540 27 1 4.9344 -5.5954 3.1036 28 6 2.2171 -1.2128 -0.0044 29 8 1.6130 -2.2734 -0.0089 30 1 -0.3634 1.0277 -0.0005 31 1 -0.3632 -0.5139 -0.8900 32 1 -0.3633 -0.5138 0.8899 33 1 1.6679 2.1191 -0.0004 34 1 4.1559 2.0753 -0.0001 35 1 5.3312 -0.0494 -0.0005 36 1 5.2473 -2.3457 -0.5131 37 1 3.7049 -3.2341 -0.5121 38 1 5.1622 -5.9753 0.6908 39 1 6.3059 -4.7701 -0.0414 40 1 8.8470 -4.9431 1.4826 41 1 7.7520 -3.5476 1.3292 42 1 9.2411 -3.2526 3.2729 43 1 8.6886 -4.8093 3.9439 44 1 9.2854 -3.3134 5.3860 45 1 6.0045 -4.6138 4.9428 46 1 5.1870 -3.2239 4.2078 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084340478.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:06 Heat of formation + Delta-G solvation = 38.493796 kcal Electronic energy + Delta-G solvation = -29667.826653 eV Core-core repulsion = 25753.498186 eV Total energy + Delta-G solvation = -3914.328466 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.55327 -40.67571 -37.97804 -36.86090 -35.62813 -35.10409 -31.95108 -31.29485 -31.02722 -29.72579 -27.60018 -27.19421 -26.88121 -23.91324 -23.48216 -22.57557 -22.48692 -21.24594 -20.07177 -18.02049 -17.61837 -17.50169 -17.34271 -16.64133 -16.27530 -15.95244 -15.40796 -15.02607 -14.48780 -14.34322 -14.16903 -13.87621 -13.71160 -13.53689 -13.41604 -13.09683 -12.86763 -12.74481 -12.59931 -12.32933 -12.15855 -11.96752 -11.85550 -11.82013 -11.59891 -11.14975 -10.84623 -10.71839 -10.57656 -10.24732 -10.12109 -9.98961 -9.95099 -9.84291 -9.39077 -9.14527 -8.47924 -8.30805 -7.86479 -6.83696 -6.03614 -3.19418 0.79640 1.90084 2.38787 2.82098 3.06168 3.51141 3.52051 3.64331 3.71466 4.41265 4.46239 4.48915 4.57253 4.62365 4.77261 4.94680 5.02721 5.06925 5.13342 5.19271 5.19730 5.26648 5.37652 5.45216 5.53362 5.56417 5.65742 5.66067 5.75152 5.82806 5.87570 6.04353 6.05592 6.11729 6.29387 6.30206 6.40322 6.46724 6.48496 6.68351 6.84909 7.01411 7.03276 7.17569 7.97056 8.02372 8.13283 8.36855 8.62894 9.18099 9.90092 10.28749 11.24786 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.012068 B = 0.004414 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.568817 B = 6341.606342 C = 7930.816845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.215 4.215 3 C -0.019 4.019 4 C -0.230 4.230 5 C 0.142 3.858 6 N -0.477 5.477 7 C 0.079 3.921 8 C 0.533 3.467 9 O -0.514 6.514 10 N -0.630 5.630 11 C 0.093 3.907 12 C -0.110 4.110 13 H 0.095 0.905 14 C -0.116 4.116 15 C 0.149 3.851 16 N -0.589 5.589 17 C -0.339 4.339 18 H 0.055 0.945 19 C -0.025 4.025 20 N -0.919 5.919 21 Si 1.062 2.938 22 H -0.286 1.286 23 H -0.295 1.295 24 H -0.293 1.293 25 C 0.144 3.856 26 C 0.129 3.871 27 H 0.077 0.923 28 C 0.524 3.476 29 O -0.553 6.553 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.133 0.867 34 H 0.146 0.854 35 H 0.161 0.839 36 H 0.117 0.883 37 H 0.124 0.876 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.085 0.915 43 H 0.018 0.982 44 H 0.268 0.732 45 H 0.017 0.983 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.812 -0.218 -15.710 18.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.219 4.219 3 C -0.041 4.041 4 C -0.252 4.252 5 C 0.016 3.984 6 N -0.187 5.187 7 C -0.047 4.047 8 C 0.320 3.680 9 O -0.388 6.388 10 N -0.367 5.367 11 C -0.030 4.030 12 C -0.129 4.129 13 H 0.113 0.887 14 C -0.155 4.155 15 C 0.023 3.977 16 N -0.312 5.312 17 C -0.469 4.469 18 H 0.073 0.927 19 C -0.227 4.227 20 N -0.560 5.560 21 Si 0.892 3.108 22 H -0.211 1.211 23 H -0.223 1.223 24 H -0.220 1.220 25 C 0.017 3.983 26 C 0.025 3.975 27 H 0.095 0.905 28 C 0.326 3.674 29 O -0.435 6.435 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.151 0.849 34 H 0.164 0.836 35 H 0.179 0.821 36 H 0.135 0.865 37 H 0.142 0.858 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.103 0.897 43 H 0.036 0.964 44 H 0.079 0.921 45 H 0.035 0.965 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.370 0.821 -14.956 17.159 hybrid contribution -1.185 -1.192 -0.242 1.699 sum -9.556 -0.372 -15.199 17.957 Atomic orbital electron populations 1.20369 0.89203 1.01808 1.02654 1.20731 0.97738 0.91940 1.11457 1.21337 0.93919 0.97899 0.90909 1.20597 0.94586 0.97264 1.12798 1.21967 0.98636 0.84698 0.93141 1.44988 1.07971 1.06535 1.59169 1.21689 0.98992 0.87139 0.96831 1.19878 0.77318 0.80184 0.90599 1.90771 1.49688 1.52744 1.45630 1.49347 1.55982 1.19830 1.11563 1.23403 0.93859 0.89322 0.96395 1.22812 0.94923 1.00008 0.95205 0.88654 1.21808 0.94940 0.97487 1.01288 1.20767 0.91895 0.95915 0.89101 1.43540 1.05688 1.13446 1.68530 1.20017 0.98566 0.87471 1.40812 0.92743 1.25766 0.94500 1.06107 0.96293 1.70788 1.37964 1.05450 1.41797 0.83557 0.75904 0.75296 0.76019 1.21112 1.22294 1.22011 1.20240 0.90777 0.95263 0.91979 1.22373 0.93483 0.92286 0.89391 0.90475 1.16904 0.80327 0.91190 0.78941 1.90912 1.66544 1.32863 1.53230 0.91686 0.91576 0.91423 0.84944 0.83614 0.82117 0.86501 0.85810 0.89998 0.90639 0.92412 0.92226 0.89686 0.96436 0.92123 0.96535 0.91146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.96 9.64 36.01 0.35 -0.61 16 2 C -0.21 -2.94 5.90 -104.42 -0.62 -3.56 16 3 C -0.02 -0.21 9.72 -39.51 -0.38 -0.59 16 4 C -0.23 -2.49 10.01 -39.88 -0.40 -2.89 16 5 C 0.14 1.75 10.28 -16.84 -0.17 1.58 16 6 N -0.48 -6.98 2.07 -121.06 -0.25 -7.23 16 7 C 0.08 1.07 5.67 -5.19 -0.03 1.04 16 8 C 0.53 9.68 8.08 -10.98 -0.09 9.59 16 9 O -0.51 -11.86 15.67 5.56 0.09 -11.77 16 10 N -0.63 -10.34 3.33 -187.73 -0.63 -10.96 16 11 C 0.09 1.10 7.77 -11.55 -0.09 1.01 16 12 C -0.11 -1.56 4.57 -90.31 -0.41 -1.98 16 13 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 14 C -0.12 -1.95 5.68 -26.85 -0.15 -2.11 16 15 C 0.15 3.33 4.62 -4.18 -0.02 3.31 16 16 N -0.59 -14.74 2.87 -175.17 -0.50 -15.25 16 17 C -0.34 -9.70 9.41 -15.06 -0.14 -9.84 16 18 H 0.05 1.66 7.89 -52.49 -0.41 1.25 16 19 C -0.03 -0.73 4.65 -17.43 -0.08 -0.81 16 20 N -0.92 -27.33 12.35 55.49 0.69 -26.64 16 21 Si 1.06 25.62 29.99 -169.99 -5.10 20.52 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.30 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 C 0.14 3.22 6.16 -5.43 -0.03 3.19 16 26 C 0.13 2.21 4.03 -77.70 -0.31 1.90 16 27 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 28 C 0.52 8.67 7.39 -15.44 -0.11 8.55 16 29 O -0.55 -10.71 16.08 4.87 0.08 -10.63 16 30 H 0.06 0.56 7.89 -51.93 -0.41 0.15 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.13 1.04 7.95 -52.48 -0.42 0.63 16 34 H 0.15 1.18 8.06 -52.48 -0.42 0.76 16 35 H 0.16 1.63 8.04 -52.49 -0.42 1.21 16 36 H 0.12 1.17 8.01 -51.93 -0.42 0.75 16 37 H 0.12 1.58 7.38 -51.93 -0.38 1.19 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.08 0.73 8.05 -51.93 -0.42 0.32 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.06 1.07 7.68 -51.93 -0.40 0.67 16 42 H 0.08 2.16 6.11 -51.93 -0.32 1.84 16 43 H 0.02 0.40 7.94 -51.93 -0.41 -0.02 16 44 H 0.27 8.00 6.76 -40.82 -0.28 7.72 16 45 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.07 1.79 6.45 -51.93 -0.34 1.45 16 LS Contribution 372.47 15.07 5.61 5.61 Total: -1.00 -37.65 372.47 -9.51 -47.16 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -6.80 Total: 1.40 kcal Atomic # 6 Polarization: 10.49 SS G_CDS: -2.70 Total: 7.79 kcal Atomic # 7 Polarization: -59.39 SS G_CDS: -0.69 Total: -60.08 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: 0.17 Total: -22.40 kcal Atomic # 14 Polarization: 25.62 SS G_CDS: -5.10 Total: 20.52 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -37.65 -9.51 -47.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084340478.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.651 kcal (2) G-P(sol) polarization free energy of solvation -37.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds