Wall clock time and date at job start Tue Mar 31 2020 17:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36397 * 120.34987 * 2 1 4 4 C 1.40190 * 119.27037 * 180.02562 * 3 2 1 5 5 C 1.35349 * 119.94913 * 359.97438 * 4 3 2 6 6 N 1.35765 * 120.69815 * 359.97438 * 5 4 3 7 7 C 1.46501 * 119.62386 * 180.02562 * 6 5 4 8 8 C 1.50704 * 109.46941 * 90.00497 * 7 6 5 9 9 O 1.21277 * 119.99811 * 359.97438 * 8 7 6 10 10 N 1.34781 * 119.99911 * 180.02562 * 8 7 6 11 11 C 1.47282 * 136.54276 * 359.97438 * 10 8 7 12 12 C 1.54082 * 87.60594 * 151.38976 * 11 10 8 13 13 H 1.09004 * 115.04257 * 141.62932 * 12 11 10 14 14 C 1.53064 * 111.39478 * 273.97515 * 12 11 10 15 15 C 1.52698 * 109.28541 * 142.28840 * 14 12 11 16 16 N 1.46539 * 108.48808 * 301.79530 * 15 14 12 17 17 C 1.36940 * 119.73544 * 236.40296 * 16 15 14 18 18 H 1.07999 * 120.00056 * 151.44698 * 17 16 15 19 19 C 1.38816 * 119.99822 * 331.44107 * 17 16 15 20 20 N 1.31619 * 119.99987 * 335.27247 * 19 17 16 21 21 Si 1.86798 * 119.99685 * 155.26722 * 19 17 16 22 22 H 1.48504 * 109.46983 * 180.02562 * 21 19 17 23 23 H 1.48500 * 109.47287 * 299.99918 * 21 19 17 24 24 H 1.48497 * 109.47286 * 60.00278 * 21 19 17 25 25 C 1.45703 * 120.52905 * 56.11877 * 16 15 14 26 26 C 1.46464 * 136.54296 * 179.97438 * 10 8 7 27 27 H 1.08998 * 111.43858 * 97.08944 * 26 10 8 28 28 C 1.34663 * 120.75406 * 0.29461 * 6 5 4 29 29 O 1.22056 * 119.98660 * 179.70090 * 28 6 5 30 30 H 1.09001 * 109.47322 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.46543 * 120.00478 * 1 2 3 32 32 H 1.08993 * 109.47294 * 239.99915 * 1 2 3 33 33 H 1.08005 * 120.36738 * 359.97438 * 3 2 1 34 34 H 1.08003 * 120.03228 * 180.02562 * 4 3 2 35 35 H 1.07992 * 119.65454 * 180.02562 * 5 4 3 36 36 H 1.09000 * 109.47378 * 330.00525 * 7 6 5 37 37 H 1.09002 * 109.47338 * 210.00210 * 7 6 5 38 38 H 1.08999 * 113.52935 * 266.07113 * 11 10 8 39 39 H 1.08997 * 113.53081 * 36.63705 * 11 10 8 40 40 H 1.08999 * 109.51364 * 262.32689 * 14 12 11 41 41 H 1.09004 * 109.51063 * 22.42664 * 14 12 11 42 42 H 1.08996 * 109.62147 * 182.01505 * 15 14 12 43 43 H 1.08998 * 109.55897 * 61.53232 * 15 14 12 44 44 H 0.97003 * 120.00057 * 354.28431 * 20 19 17 45 45 H 1.09004 * 108.78504 * 81.16479 * 25 16 15 46 46 H 1.08996 * 108.78821 * 199.48685 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1962 1.1770 0.0000 4 6 3.5979 1.1506 -0.0005 5 6 4.2513 -0.0346 -0.0005 6 7 3.5637 -1.2052 0.0005 7 6 4.2949 -2.4747 0.0011 8 6 4.5461 -2.9091 1.4221 9 8 4.1534 -2.2253 2.3436 10 7 5.2081 -4.0569 1.6689 11 6 5.8250 -5.1285 0.8688 12 6 6.8043 -5.3491 2.0378 13 1 7.0563 -6.3904 2.2383 14 6 8.0113 -4.4129 1.9393 15 6 8.4043 -3.9478 3.3396 16 7 7.2518 -3.2771 3.9471 17 6 7.3757 -1.9908 4.4004 18 1 6.5155 -1.3379 4.4144 19 6 8.6070 -1.5262 4.8422 20 7 9.5091 -2.3746 5.2880 21 14 8.9835 0.3030 4.8036 22 1 10.3545 0.5372 5.3240 23 1 8.8937 0.7976 3.4063 24 1 8.0019 1.0283 5.6495 25 6 5.9733 -3.9655 4.0670 26 6 5.6389 -4.8020 2.8540 27 1 4.9344 -5.5954 3.1036 28 6 2.2171 -1.2128 -0.0044 29 8 1.6130 -2.2734 -0.0089 30 1 -0.3634 1.0277 -0.0005 31 1 -0.3632 -0.5139 -0.8900 32 1 -0.3633 -0.5138 0.8899 33 1 1.6679 2.1191 -0.0004 34 1 4.1559 2.0753 -0.0001 35 1 5.3312 -0.0494 -0.0005 36 1 5.2473 -2.3457 -0.5131 37 1 3.7049 -3.2341 -0.5121 38 1 5.1622 -5.9753 0.6908 39 1 6.3059 -4.7701 -0.0414 40 1 8.8470 -4.9431 1.4826 41 1 7.7520 -3.5476 1.3292 42 1 9.2411 -3.2526 3.2729 43 1 8.6886 -4.8093 3.9439 44 1 9.2854 -3.3134 5.3860 45 1 6.0045 -4.6138 4.9428 46 1 5.1870 -3.2239 4.2078 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084340478.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:05 Heat of formation + Delta-G solvation = 13.035827 kcal Electronic energy + Delta-G solvation = -29668.930593 eV Core-core repulsion = 25753.498186 eV Total energy + Delta-G solvation = -3915.432407 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.65131 -41.93654 -39.38795 -37.99674 -37.45813 -36.13274 -33.74603 -32.71986 -32.32772 -31.09358 -28.90090 -28.44242 -28.11789 -25.69719 -24.84998 -23.81927 -23.45749 -22.74861 -21.46291 -19.76785 -19.12874 -18.57916 -18.38534 -18.07767 -17.35739 -17.26633 -16.73010 -16.28556 -16.10795 -15.83903 -15.45047 -15.38379 -15.31038 -14.80706 -14.76812 -14.51378 -14.11062 -13.87383 -13.69139 -13.55565 -13.31826 -13.28800 -13.13570 -12.99416 -12.86702 -12.62516 -12.48503 -12.43671 -12.03285 -11.94143 -11.77603 -11.52146 -11.35172 -11.13258 -11.02191 -10.55456 -10.50266 -9.72754 -8.92819 -8.89308 -8.27692 -5.42658 -0.16359 0.88501 1.34575 1.51354 1.52440 1.59041 1.79954 1.90805 2.60584 2.61920 3.14542 3.26961 3.35221 3.51626 3.55164 3.68118 3.81507 3.92174 4.00316 4.04335 4.15425 4.17123 4.23629 4.28314 4.33245 4.43092 4.51966 4.63135 4.66135 4.73823 4.75085 4.82594 4.87076 4.94000 5.00060 5.08015 5.12440 5.14149 5.22556 5.26412 5.37816 5.54772 5.60609 5.82531 6.00107 6.38518 6.73357 6.89437 7.04870 7.08282 7.79580 8.14932 8.96161 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.012068 B = 0.004414 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.568817 B = 6341.606342 C = 7930.816845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.250 4.250 3 C -0.002 4.002 4 C -0.223 4.223 5 C 0.121 3.879 6 N -0.481 5.481 7 C 0.087 3.913 8 C 0.520 3.480 9 O -0.581 6.581 10 N -0.638 5.638 11 C 0.109 3.891 12 C -0.101 4.101 13 H 0.133 0.867 14 C -0.104 4.104 15 C 0.152 3.848 16 N -0.603 5.603 17 C -0.348 4.348 18 H 0.022 0.978 19 C -0.068 4.068 20 N -0.936 5.936 21 Si 1.109 2.891 22 H -0.283 1.283 23 H -0.275 1.275 24 H -0.288 1.288 25 C 0.147 3.853 26 C 0.115 3.885 27 H 0.102 0.898 28 C 0.503 3.497 29 O -0.602 6.602 30 H 0.098 0.902 31 H 0.062 0.938 32 H 0.045 0.955 33 H 0.172 0.828 34 H 0.180 0.820 35 H 0.181 0.819 36 H 0.158 0.842 37 H 0.132 0.868 38 H 0.119 0.881 39 H 0.107 0.893 40 H 0.093 0.907 41 H 0.048 0.952 42 H 0.049 0.951 43 H 0.011 0.989 44 H 0.255 0.745 45 H 0.006 0.994 46 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.004 0.045 -18.675 20.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.253 4.253 3 C -0.023 4.023 4 C -0.245 4.245 5 C -0.005 4.005 6 N -0.190 5.190 7 C -0.038 4.038 8 C 0.309 3.691 9 O -0.460 6.460 10 N -0.373 5.373 11 C -0.012 4.012 12 C -0.120 4.120 13 H 0.150 0.850 14 C -0.143 4.143 15 C 0.027 3.973 16 N -0.328 5.328 17 C -0.478 4.478 18 H 0.040 0.960 19 C -0.264 4.264 20 N -0.578 5.578 21 Si 0.934 3.066 22 H -0.209 1.209 23 H -0.200 1.200 24 H -0.215 1.215 25 C 0.021 3.979 26 C 0.011 3.989 27 H 0.120 0.880 28 C 0.307 3.693 29 O -0.489 6.489 30 H 0.117 0.883 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.189 0.811 34 H 0.197 0.803 35 H 0.199 0.801 36 H 0.175 0.825 37 H 0.150 0.850 38 H 0.136 0.864 39 H 0.125 0.875 40 H 0.112 0.888 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.029 0.971 44 H 0.065 0.935 45 H 0.024 0.976 46 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -7.533 1.041 -17.976 19.519 hybrid contribution -1.397 -1.251 0.796 2.037 sum -8.929 -0.211 -17.180 19.363 Atomic orbital electron populations 1.20372 0.88296 1.03530 1.01424 1.20989 0.98761 0.91950 1.13637 1.21804 0.94229 0.98462 0.87843 1.21139 0.94850 0.98068 1.10459 1.22526 0.99800 0.84568 0.93600 1.45068 1.07730 1.07613 1.58587 1.21800 1.00877 0.87244 0.93914 1.20751 0.76439 0.80089 0.91812 1.90736 1.52475 1.54926 1.47901 1.49572 1.55105 1.20202 1.12409 1.23625 0.92914 0.88645 0.95979 1.22798 0.92924 1.00808 0.95459 0.84972 1.21643 0.97516 0.98136 0.96998 1.20708 0.89825 0.94458 0.92353 1.43702 1.07210 1.12755 1.69098 1.19994 0.97773 0.88909 1.41150 0.96033 1.27052 0.94272 1.09450 0.95653 1.70903 1.38282 1.05036 1.43550 0.82945 0.75690 0.70854 0.77159 1.20875 1.20047 1.21461 1.20184 0.88509 0.94404 0.94813 1.22492 0.96266 0.92126 0.88026 0.88006 1.17469 0.81070 0.91689 0.79032 1.90856 1.67539 1.34354 1.56174 0.88350 0.91959 0.93622 0.81098 0.80251 0.80143 0.82458 0.84973 0.86363 0.87489 0.88825 0.93286 0.93294 0.97066 0.93472 0.97644 0.95529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.82 9.64 71.24 0.69 -1.14 16 2 C -0.25 -6.77 5.90 -19.73 -0.12 -6.89 16 3 C 0.00 -0.04 9.72 22.31 0.22 0.18 16 4 C -0.22 -4.25 10.01 22.08 0.22 -4.02 16 5 C 0.12 2.79 10.28 83.42 0.86 3.65 16 6 N -0.48 -13.93 2.07 -655.06 -1.36 -15.29 16 7 C 0.09 2.25 5.67 85.63 0.49 2.74 16 8 C 0.52 18.96 8.08 87.66 0.71 19.67 16 9 O -0.58 -28.28 15.67 -3.02 -0.05 -28.33 16 10 N -0.64 -19.95 3.33 -866.25 -2.89 -22.84 16 11 C 0.11 2.03 7.77 81.09 0.63 2.66 16 12 C -0.10 -2.48 4.57 -10.59 -0.05 -2.53 16 13 H 0.13 2.40 8.14 -2.38 -0.02 2.38 16 14 C -0.10 -3.23 5.68 30.52 0.17 -3.06 16 15 C 0.15 6.82 4.62 86.27 0.40 7.21 16 16 N -0.60 -31.36 2.87 -708.12 -2.03 -33.39 16 17 C -0.35 -20.83 9.41 84.03 0.79 -20.04 16 18 H 0.02 1.42 7.89 -2.91 -0.02 1.39 16 19 C -0.07 -3.95 4.65 84.86 0.39 -3.56 16 20 N -0.94 -57.12 12.35 21.65 0.27 -56.85 16 21 Si 1.11 52.41 29.99 68.60 2.06 54.47 16 22 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 23 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 24 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 25 C 0.15 6.89 6.16 85.91 0.53 7.42 16 26 C 0.12 3.85 4.03 38.68 0.16 4.01 16 27 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 28 C 0.50 17.02 7.39 84.82 0.63 17.64 16 29 O -0.60 -24.46 16.08 -5.50 -0.09 -24.55 16 30 H 0.10 1.50 7.89 -2.39 -0.02 1.48 16 31 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.17 1.98 7.95 -2.91 -0.02 1.96 16 34 H 0.18 2.15 8.06 -2.91 -0.02 2.13 16 35 H 0.18 3.28 8.04 -2.91 -0.02 3.25 16 36 H 0.16 2.66 8.01 -2.39 -0.02 2.64 16 37 H 0.13 3.21 7.38 -2.39 -0.02 3.19 16 38 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.11 1.42 8.05 -2.39 -0.02 1.40 16 40 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.05 1.63 7.68 -2.39 -0.02 1.62 16 42 H 0.05 2.54 6.11 -2.39 -0.01 2.52 16 43 H 0.01 0.51 7.94 -2.39 -0.02 0.50 16 44 H 0.26 15.82 6.76 -92.71 -0.63 15.19 16 45 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 46 H 0.03 1.45 6.45 -2.39 -0.02 1.43 16 Total: -1.00 -92.30 372.47 3.74 -88.55 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 1.12 Total: 14.29 kcal Atomic # 6 Polarization: 17.23 SS G_CDS: 6.71 Total: 23.94 kcal Atomic # 7 Polarization: -122.36 SS G_CDS: -6.01 Total: -128.37 kcal Atomic # 8 Polarization: -52.74 SS G_CDS: -0.14 Total: -52.88 kcal Atomic # 14 Polarization: 52.41 SS G_CDS: 2.06 Total: 54.47 kcal Total: -92.30 3.74 -88.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084340478.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.590 kcal (2) G-P(sol) polarization free energy of solvation -92.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds