Wall clock time and date at job start Tue Mar 31 2020 16:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35651 * 116.99996 * 2 1 4 4 C 1.39344 * 120.53979 * 0.24861 * 3 2 1 5 5 C 1.38302 * 118.44016 * 180.21684 * 4 3 2 6 6 C 1.50702 * 120.27799 * 179.78396 * 5 4 3 7 7 C 1.38764 * 119.44520 * 359.51496 * 5 4 3 8 8 N 1.31374 * 121.06592 * 0.26921 * 7 5 4 9 9 C 1.32858 * 121.69599 * 359.97438 * 8 7 5 10 10 C 1.47829 * 119.78301 * 179.97438 * 9 8 7 11 11 O 1.21556 * 119.99956 * 179.97438 * 10 9 8 12 12 N 1.34776 * 120.00196 * 359.97438 * 10 9 8 13 13 C 1.47290 * 136.53987 * 359.61916 * 12 10 9 14 14 C 1.54365 * 87.50223 * 151.48172 * 13 12 10 15 15 H 1.08996 * 115.78864 * 141.80845 * 14 13 12 16 16 C 1.53067 * 111.57445 * 274.17083 * 14 13 12 17 17 C 1.53145 * 109.21120 * 142.37472 * 16 14 13 18 18 N 1.46536 * 108.25818 * 301.59455 * 17 16 14 19 19 C 1.36930 * 119.74095 * 236.40056 * 18 17 16 20 20 H 1.08004 * 120.00451 * 25.19430 * 19 18 17 21 21 C 1.38813 * 120.00204 * 205.19760 * 19 18 17 22 22 N 1.31620 * 119.99901 * 14.47537 * 21 19 18 23 23 Si 1.86800 * 120.00318 * 194.48350 * 21 19 18 24 24 H 1.48498 * 109.47406 * 89.99636 * 23 21 19 25 25 H 1.48497 * 109.47180 * 209.99956 * 23 21 19 26 26 H 1.48506 * 109.47025 * 329.99618 * 23 21 19 27 27 C 1.45705 * 120.52078 * 56.41403 * 18 17 16 28 28 C 1.46464 * 136.54674 * 180.02562 * 12 10 9 29 29 H 1.09006 * 111.44080 * 97.05741 * 28 12 10 30 30 H 1.09000 * 109.46532 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47434 * 300.00493 * 1 2 3 32 32 H 1.08996 * 109.46929 * 60.00117 * 1 2 3 33 33 H 1.08006 * 120.78077 * 0.02562 * 4 3 2 34 34 H 1.09003 * 109.46966 * 269.72539 * 6 5 4 35 35 H 1.09004 * 109.46805 * 29.72385 * 6 5 4 36 36 H 1.08999 * 109.46943 * 149.72384 * 6 5 4 37 37 H 1.07999 * 119.46854 * 180.24788 * 7 5 4 38 38 H 1.08998 * 113.53251 * 266.10777 * 13 12 10 39 39 H 1.08996 * 113.53034 * 36.74961 * 13 12 10 40 40 H 1.09002 * 109.51051 * 22.45888 * 16 14 13 41 41 H 1.08994 * 109.55892 * 262.32270 * 16 14 13 42 42 H 1.09001 * 109.70826 * 181.90400 * 17 16 14 43 43 H 1.09004 * 109.74190 * 61.30349 * 17 16 14 44 44 H 0.97000 * 119.99895 * 179.97438 * 22 21 19 45 45 H 1.09003 * 108.79161 * 199.11288 * 27 18 17 46 46 H 1.09001 * 108.78656 * 80.90346 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2970 2.3844 0.0052 5 6 1.9696 3.5928 0.0004 6 6 1.2019 4.8897 0.0008 7 6 3.3572 3.6012 0.0008 8 7 4.0419 2.4801 0.0004 9 6 3.4410 1.2951 0.0002 10 6 4.2532 0.0599 -0.0008 11 8 3.7075 -1.0263 -0.0006 12 7 5.5986 0.1381 -0.0020 13 6 6.6072 1.2115 -0.0093 14 6 7.5490 0.2393 0.7328 15 1 8.5984 0.2803 0.4411 16 6 7.3253 0.2842 2.2464 17 6 7.4647 -1.1294 2.8186 18 7 6.4829 -1.9919 2.1556 19 6 5.5715 -2.6854 2.9061 20 1 5.2901 -2.3237 3.8841 21 6 5.0090 -3.8535 2.4101 22 7 5.5437 -4.4494 1.3654 23 14 3.4930 -4.5796 3.2250 24 1 2.2732 -4.0174 2.5916 25 1 3.5012 -6.0554 3.0599 26 1 3.4996 -4.2434 4.6715 27 6 6.4691 -2.1176 0.7041 28 6 6.7185 -0.8059 -0.0036 29 1 7.1026 -0.9667 -1.0110 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 0.2174 2.3527 0.0097 34 1 1.0172 5.2029 -1.0268 35 1 0.2507 4.7487 0.5142 36 1 1.7825 5.6554 0.5153 37 1 3.8828 4.5447 0.0011 38 1 6.9542 1.4758 -1.0082 39 1 6.3219 2.0807 0.5832 40 1 6.3255 0.6647 2.4555 41 1 8.0670 0.9377 2.7056 42 1 7.2735 -1.1122 3.8916 43 1 8.4704 -1.5053 2.6304 44 1 5.1509 -5.2659 1.0190 45 1 5.4982 -2.5044 0.3943 46 1 7.2391 -2.8292 0.4060 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084413025.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:58 Heat of formation + Delta-G solvation = 44.700290 kcal Electronic energy + Delta-G solvation = -30000.688545 eV Core-core repulsion = 26086.629212 eV Total energy + Delta-G solvation = -3914.059332 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.93710 -40.04865 -38.21150 -37.23830 -35.05085 -33.81806 -31.97915 -30.97125 -29.97360 -29.19918 -28.02347 -27.07243 -26.58588 -23.77353 -23.48057 -22.94745 -22.14158 -20.86286 -20.06319 -18.14485 -17.55508 -17.30665 -17.04284 -15.99007 -15.97294 -15.48576 -15.15406 -14.76559 -14.32232 -14.13173 -14.05795 -13.71591 -13.61192 -13.37891 -13.15045 -13.02237 -12.84386 -12.64552 -12.36892 -12.34858 -12.15571 -11.74582 -11.47954 -11.43758 -11.29052 -10.93229 -10.57729 -10.49414 -10.31431 -10.05108 -9.96361 -9.70823 -9.65586 -9.61344 -9.25828 -8.82431 -8.39482 -8.18326 -7.83935 -6.46754 -5.54056 -2.95437 0.71731 1.19807 3.16512 3.18258 3.43224 3.54740 3.60475 3.63597 4.11199 4.27964 4.44142 4.59869 4.70833 4.75237 4.80638 4.90294 4.97210 5.07613 5.23252 5.27689 5.30390 5.42886 5.48705 5.59408 5.62603 5.67827 5.70677 5.77635 5.92239 5.95648 6.00992 6.15991 6.26610 6.30102 6.40138 6.52803 6.58893 6.66702 6.74503 6.93320 7.15632 7.22779 7.63546 7.80013 7.90416 8.06587 8.52946 8.69651 8.96688 9.47654 10.12373 10.59957 11.54038 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.011607 B = 0.005183 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.780493 B = 5401.296995 C = 7054.082290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.266 6.266 3 C 0.140 3.860 4 C -0.182 4.182 5 C -0.083 4.083 6 C -0.112 4.112 7 C 0.050 3.950 8 N -0.411 5.411 9 C 0.055 3.945 10 C 0.593 3.407 11 O -0.492 6.492 12 N -0.615 5.615 13 C 0.111 3.889 14 C -0.119 4.119 15 H 0.090 0.910 16 C -0.114 4.114 17 C 0.149 3.851 18 N -0.584 5.584 19 C -0.250 4.250 20 H 0.061 0.939 21 C 0.012 3.988 22 N -0.904 5.904 23 Si 0.899 3.101 24 H -0.286 1.286 25 H -0.293 1.293 26 H -0.283 1.283 27 C 0.168 3.832 28 C 0.119 3.881 29 H 0.071 0.929 30 H 0.105 0.895 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.143 0.857 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.160 0.840 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.060 0.940 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.019 0.981 44 H 0.251 0.749 45 H 0.103 0.897 46 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.790 19.807 -5.254 21.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.175 6.175 3 C 0.089 3.911 4 C -0.208 4.208 5 C -0.086 4.086 6 C -0.169 4.169 7 C -0.110 4.110 8 N -0.122 5.122 9 C -0.084 4.084 10 C 0.379 3.621 11 O -0.364 6.364 12 N -0.350 5.350 13 C -0.013 4.013 14 C -0.139 4.139 15 H 0.108 0.892 16 C -0.153 4.153 17 C 0.022 3.978 18 N -0.307 5.307 19 C -0.379 4.379 20 H 0.078 0.922 21 C -0.186 4.186 22 N -0.549 5.549 23 Si 0.730 3.270 24 H -0.213 1.213 25 H -0.220 1.220 26 H -0.208 1.208 27 C 0.041 3.959 28 C 0.016 3.984 29 H 0.089 0.911 30 H 0.124 0.876 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.160 0.840 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.177 0.823 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.037 0.963 44 H 0.061 0.939 45 H 0.121 0.879 46 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -5.420 18.751 -5.330 20.233 hybrid contribution -2.104 -0.060 0.201 2.114 sum -7.524 18.691 -5.129 20.791 Atomic orbital electron populations 1.23200 0.78867 1.04712 1.00776 1.86521 1.20627 1.24271 1.86081 1.20094 0.92386 0.85685 0.92974 1.21569 1.00705 0.91296 1.07213 1.20924 0.95298 0.95552 0.96780 1.20777 0.99822 0.93486 1.02798 1.22577 0.90506 0.96529 1.01432 1.67772 1.39359 0.97257 1.07822 1.20932 0.88529 0.92960 1.05992 1.16895 0.79936 0.86909 0.78312 1.90924 1.69996 1.27186 1.48300 1.49110 1.02572 1.11412 1.71954 1.23262 0.85863 0.92784 0.99385 1.22844 0.97659 0.96799 0.96573 0.89232 1.21810 1.00854 0.99761 0.92885 1.20722 0.92353 0.88934 0.95787 1.43448 1.34679 1.51523 1.01031 1.19088 1.16450 1.01894 1.00496 0.92153 1.24881 0.99435 0.95962 0.98345 1.70011 1.39722 1.18848 1.26295 0.86337 0.84338 0.77758 0.78595 1.21322 1.21967 1.20827 1.20192 1.03764 0.88969 0.82934 1.22700 0.82552 0.94698 0.98488 0.91089 0.87627 0.92657 0.92769 0.83954 0.90517 0.91226 0.90704 0.82287 0.91135 0.89932 0.92157 0.92844 0.92805 0.96348 0.93930 0.87875 0.95347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.83 101.05 0.99 1.23 16 2 O -0.27 -4.83 8.56 -40.60 -0.35 -5.17 16 3 C 0.14 2.34 6.71 -38.56 -0.26 2.08 16 4 C -0.18 -2.20 8.80 -39.15 -0.34 -2.55 16 5 C -0.08 -0.87 5.90 -104.40 -0.62 -1.49 16 6 C -0.11 -0.71 10.03 36.01 0.36 -0.34 16 7 C 0.05 0.59 10.85 -17.55 -0.19 0.40 16 8 N -0.41 -6.44 8.04 -9.71 -0.08 -6.52 16 9 C 0.06 1.03 6.76 -82.88 -0.56 0.47 16 10 C 0.59 13.44 7.99 -12.34 -0.10 13.34 16 11 O -0.49 -13.30 14.38 -16.63 -0.24 -13.54 16 12 N -0.61 -12.63 3.33 -188.62 -0.63 -13.25 16 13 C 0.11 1.75 6.90 -11.39 -0.08 1.67 16 14 C -0.12 -2.02 4.57 -90.15 -0.41 -2.43 16 15 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 16 C -0.11 -2.07 5.71 -26.62 -0.15 -2.22 16 17 C 0.15 3.26 6.46 -3.95 -0.03 3.24 16 18 N -0.58 -15.69 3.03 -174.88 -0.53 -16.22 16 19 C -0.25 -7.45 9.53 -15.06 -0.14 -7.59 16 20 H 0.06 1.79 7.83 -52.48 -0.41 1.38 16 21 C 0.01 0.37 4.94 -17.43 -0.09 0.28 16 22 N -0.90 -28.28 10.94 55.49 0.61 -27.67 16 23 Si 0.90 24.06 29.58 -169.99 -5.03 19.03 16 24 H -0.29 -7.85 7.11 56.52 0.40 -7.45 16 25 H -0.29 -7.75 7.11 56.52 0.40 -7.34 16 26 H -0.28 -7.30 7.11 56.52 0.40 -6.90 16 27 C 0.17 4.38 4.59 -5.42 -0.02 4.36 16 28 C 0.12 2.48 4.03 -77.67 -0.31 2.17 16 29 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.05 0.55 7.69 -51.93 -0.40 0.15 16 32 H 0.05 0.50 7.71 -51.93 -0.40 0.10 16 33 H 0.14 1.29 6.46 -52.48 -0.34 0.95 16 34 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 36 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 37 H 0.16 1.33 8.06 -52.49 -0.42 0.91 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.08 1.26 7.04 -51.93 -0.37 0.90 16 40 H 0.06 1.23 7.69 -51.93 -0.40 0.83 16 41 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.05 1.17 7.87 -51.93 -0.41 0.76 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 45 H 0.10 3.16 4.95 -51.93 -0.26 2.90 16 46 H 0.03 0.79 7.99 -51.93 -0.42 0.38 16 LS Contribution 367.56 15.07 5.54 5.54 Total: -1.00 -37.61 367.56 -9.41 -47.02 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -6.75 Total: -1.82 kcal Atomic # 6 Polarization: 14.57 SS G_CDS: -1.95 Total: 12.62 kcal Atomic # 7 Polarization: -63.03 SS G_CDS: -0.63 Total: -63.66 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.59 Total: -18.71 kcal Atomic # 14 Polarization: 24.06 SS G_CDS: -5.03 Total: 19.03 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -37.61 -9.41 -47.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084413025.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.717 kcal (2) G-P(sol) polarization free energy of solvation -37.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds