Wall clock time and date at job start Tue Mar 31 2020 17:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38356 * 119.40624 * 2 1 4 4 C 1.38337 * 119.45544 * 180.02562 * 3 2 1 5 5 C 1.50697 * 120.82381 * 179.97438 * 4 3 2 6 6 C 1.39986 * 118.35126 * 359.97438 * 4 3 2 7 7 C 1.47524 * 120.59723 * 179.97438 * 6 4 3 8 8 O 1.21587 * 120.00054 * 270.02125 * 7 6 4 9 9 N 1.34781 * 120.00162 * 90.02316 * 7 6 4 10 10 C 1.47285 * 136.53748 * 0.02562 * 9 7 6 11 11 C 1.54085 * 87.60578 * 151.36743 * 10 9 7 12 12 H 1.09000 * 115.04849 * 142.50064 * 11 10 9 13 13 C 1.53063 * 111.38906 * 273.97075 * 11 10 9 14 14 C 1.53147 * 109.21322 * 142.39412 * 13 11 10 15 15 N 1.46535 * 108.25507 * 301.59020 * 14 13 11 16 16 C 1.36943 * 119.73774 * 236.44443 * 15 14 13 17 17 H 1.07999 * 120.00109 * 25.17230 * 16 15 14 18 18 C 1.38816 * 119.99573 * 205.17094 * 16 15 14 19 19 N 1.31617 * 119.99920 * 14.49524 * 18 16 15 20 20 Si 1.86794 * 119.99693 * 194.49014 * 18 16 15 21 21 H 1.48503 * 109.47248 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47223 * 120.00337 * 20 18 16 23 23 H 1.48507 * 109.47415 * 240.00354 * 20 18 16 24 24 C 1.45702 * 120.51966 * 56.41942 * 15 14 13 25 25 C 1.46465 * 136.54498 * 179.62546 * 9 7 6 26 26 H 1.09000 * 111.43487 * 96.38662 * 25 9 7 27 27 C 1.40281 * 118.80816 * 0.02562 * 6 4 3 28 28 O 1.35423 * 119.80201 * 179.97438 * 27 6 4 29 29 N 1.31886 * 119.40688 * 180.02562 * 2 1 3 30 30 H 1.09003 * 109.46826 * 90.00589 * 1 2 3 31 31 H 1.09000 * 109.47169 * 209.99935 * 1 2 3 32 32 H 1.08990 * 109.47170 * 330.00465 * 1 2 3 33 33 H 1.07994 * 120.27245 * 359.74058 * 3 2 1 34 34 H 1.09010 * 109.46965 * 89.99904 * 5 4 3 35 35 H 1.08995 * 109.47326 * 210.00090 * 5 4 3 36 36 H 1.09005 * 109.47165 * 330.00389 * 5 4 3 37 37 H 1.09004 * 113.52563 * 266.04409 * 10 9 7 38 38 H 1.08993 * 113.53476 * 36.67936 * 10 9 7 39 39 H 1.09003 * 109.51914 * 262.31858 * 13 11 10 40 40 H 1.09005 * 109.51639 * 22.47936 * 13 11 10 41 41 H 1.09003 * 109.70652 * 61.28247 * 14 13 11 42 42 H 1.09003 * 109.70803 * 181.89821 * 14 13 11 43 43 H 0.97007 * 119.99536 * 180.02562 * 19 18 16 44 44 H 1.08994 * 108.78561 * 80.90163 * 24 15 14 45 45 H 1.09000 * 108.78257 * 199.11076 * 24 15 14 46 46 H 0.96697 * 114.00452 * 270.02353 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2065 -0.0005 5 6 4.3408 2.5013 -0.0011 6 6 4.2355 -0.0249 -0.0005 7 6 5.7097 -0.0814 -0.0016 8 8 6.3164 -0.1048 -1.0551 9 7 6.3840 -0.1072 1.1651 10 6 6.0425 -0.0945 2.5977 11 6 7.3429 -0.8822 2.8485 12 1 7.8782 -0.6114 3.7586 13 6 7.1238 -2.3881 2.6843 14 6 8.3580 -3.0077 2.0224 15 7 8.5638 -2.3505 0.7290 16 6 8.6117 -3.1021 -0.4148 17 1 8.1169 -4.0614 -0.4517 18 6 9.2960 -2.6307 -1.5268 19 7 10.1283 -1.6182 -1.4069 20 14 9.0359 -3.4337 -3.1931 21 1 8.0568 -4.5425 -3.0609 22 1 8.5156 -2.4264 -4.1522 23 1 10.3279 -3.9704 -3.6912 24 6 8.7175 -0.9038 0.6502 25 6 7.7871 -0.1676 1.5810 26 1 8.1810 0.8251 1.7990 27 6 3.4758 -1.2042 -0.0005 28 8 4.0992 -2.4064 -0.0010 29 7 2.1546 -1.1489 -0.0005 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5137 33 1 1.6412 2.1375 -0.0042 34 1 4.5271 2.8137 1.0265 35 1 5.2911 2.3580 -0.5153 36 1 3.7618 3.2687 -0.5149 37 1 6.0465 0.9031 3.0371 38 1 5.1400 -0.6576 2.8350 39 1 6.9687 -2.8424 3.6630 40 1 6.2487 -2.5627 2.0583 41 1 9.2314 -2.8536 2.6562 42 1 8.1970 -4.0751 1.8709 43 1 10.6062 -1.2886 -2.1840 44 1 9.7460 -0.6458 0.9023 45 1 8.5186 -0.5849 -0.3729 46 1 4.2802 -2.7553 -0.8845 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084559527.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:10 Heat of formation + Delta-G solvation = 31.524046 kcal Electronic energy + Delta-G solvation = -30331.643187 eV Core-core repulsion = 26417.012490 eV Total energy + Delta-G solvation = -3914.630697 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.99592 -40.15069 -37.55956 -37.19007 -35.16875 -34.18868 -32.10402 -31.81066 -30.11093 -29.48458 -28.01348 -27.48512 -26.81500 -23.82794 -23.51671 -22.72921 -21.62176 -20.98934 -19.93802 -18.30717 -17.97021 -17.28389 -17.17964 -16.09430 -15.73542 -15.57560 -15.31750 -14.58193 -14.19800 -14.14700 -13.67781 -13.58490 -13.49746 -13.27354 -13.16889 -13.09149 -12.76521 -12.60267 -12.53303 -12.35195 -12.06510 -11.91568 -11.83551 -11.53656 -11.42742 -11.07017 -10.65581 -10.62415 -10.41992 -10.11317 -9.92568 -9.78454 -9.74132 -9.61690 -9.42713 -8.95828 -8.78381 -8.27652 -8.11635 -6.54630 -5.62110 -3.03006 0.78242 1.04548 3.04502 3.20671 3.35645 3.48890 3.55679 3.57420 3.72763 4.38703 4.42349 4.62794 4.66064 4.71808 4.91333 5.09938 5.18030 5.21895 5.28228 5.34799 5.41332 5.45920 5.47476 5.54695 5.59003 5.66505 5.67738 5.76250 5.83865 5.89722 5.95754 6.07000 6.14864 6.19129 6.35461 6.41784 6.49257 6.55828 6.64947 6.85711 7.09693 7.52059 7.55704 7.80592 7.85304 7.97393 8.29550 8.61303 8.68193 9.39726 10.04366 10.52171 11.46331 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.012945 B = 0.004859 C = 0.004346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.394988 B = 5761.017807 C = 6441.085861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.160 3.840 3 C -0.191 4.191 4 C 0.005 3.995 5 C -0.122 4.122 6 C -0.186 4.186 7 C 0.601 3.399 8 O -0.509 6.509 9 N -0.619 5.619 10 C 0.095 3.905 11 C -0.111 4.111 12 H 0.092 0.908 13 C -0.118 4.118 14 C 0.150 3.850 15 N -0.584 5.584 16 C -0.247 4.247 17 H 0.063 0.937 18 C 0.010 3.990 19 N -0.905 5.905 20 Si 0.899 3.101 21 H -0.280 1.280 22 H -0.290 1.290 23 H -0.292 1.292 24 C 0.167 3.833 25 C 0.120 3.880 26 H 0.072 0.928 27 C 0.358 3.642 28 O -0.470 6.470 29 N -0.508 5.508 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.141 0.859 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.053 0.947 40 H 0.067 0.933 41 H 0.018 0.982 42 H 0.055 0.945 43 H 0.250 0.750 44 H 0.030 0.970 45 H 0.103 0.897 46 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.140 8.477 8.503 20.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.022 3.978 3 C -0.211 4.211 4 C -0.003 4.003 5 C -0.179 4.179 6 C -0.192 4.192 7 C 0.388 3.612 8 O -0.383 6.383 9 N -0.354 5.354 10 C -0.028 4.028 11 C -0.130 4.130 12 H 0.110 0.890 13 C -0.157 4.157 14 C 0.023 3.977 15 N -0.306 5.306 16 C -0.377 4.377 17 H 0.081 0.919 18 C -0.188 4.188 19 N -0.550 5.550 20 Si 0.730 3.270 21 H -0.205 1.205 22 H -0.216 1.216 23 H -0.220 1.220 24 C 0.040 3.960 25 C 0.017 3.983 26 H 0.090 0.910 27 C 0.178 3.822 28 O -0.278 6.278 29 N -0.229 5.229 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.158 0.842 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.036 0.964 42 H 0.074 0.926 43 H 0.060 0.940 44 H 0.048 0.952 45 H 0.121 0.879 46 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -16.240 7.778 8.152 19.766 hybrid contribution 0.301 0.377 -1.342 1.426 sum -15.939 8.154 6.810 19.155 Atomic orbital electron populations 1.20760 0.88403 1.03648 1.03329 1.21113 0.96809 0.87187 0.92701 1.21703 0.93585 0.99419 1.06374 1.20246 0.93590 0.94258 0.92167 1.20908 1.00659 0.93066 1.03237 1.21065 0.95562 0.93893 1.08702 1.16994 0.84922 0.76820 0.82502 1.90914 1.68666 1.48968 1.29783 1.49322 1.09921 1.71963 1.04192 1.23319 0.99149 0.99485 0.80875 1.22678 0.95887 0.96665 0.97757 0.89007 1.21874 1.01565 0.92551 0.99739 1.20709 0.93300 0.95780 0.87875 1.43450 1.84463 1.01294 1.01407 1.19140 1.26376 1.02065 0.90121 0.91948 1.24898 0.96576 0.98585 0.98769 1.70016 1.28069 1.28351 1.28554 0.86276 0.77178 0.78509 0.85077 1.20501 1.21635 1.21974 1.20162 0.93206 0.83031 0.99559 1.22543 0.83501 0.98670 0.93605 0.91041 1.19081 0.86101 0.84923 0.92094 1.84688 1.76428 1.32165 1.34490 1.67059 1.09345 1.30321 1.16173 0.90101 0.90245 0.90434 0.84155 0.90065 0.90312 0.90373 0.90613 0.91305 0.92859 0.91406 0.96420 0.92636 0.93953 0.95235 0.87860 0.73044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.83 10.16 36.01 0.37 -0.47 16 2 C 0.16 1.94 6.78 -82.52 -0.56 1.38 16 3 C -0.19 -2.13 9.41 -39.50 -0.37 -2.50 16 4 C 0.01 0.07 5.95 -103.93 -0.62 -0.55 16 5 C -0.12 -1.39 9.69 36.00 0.35 -1.04 16 6 C -0.19 -3.16 5.50 -104.69 -0.58 -3.73 16 7 C 0.60 12.19 5.61 -12.47 -0.07 12.12 16 8 O -0.51 -12.80 16.35 5.29 0.09 -12.71 16 9 N -0.62 -11.47 3.34 -189.31 -0.63 -12.11 16 10 C 0.10 1.37 7.76 -11.53 -0.09 1.28 16 11 C -0.11 -1.75 4.57 -90.46 -0.41 -2.16 16 12 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 13 C -0.12 -2.07 5.69 -26.62 -0.15 -2.22 16 14 C 0.15 3.17 6.46 -3.95 -0.03 3.14 16 15 N -0.58 -14.98 3.03 -175.07 -0.53 -15.51 16 16 C -0.25 -7.08 9.53 -15.06 -0.14 -7.22 16 17 H 0.06 1.77 7.83 -52.49 -0.41 1.36 16 18 C 0.01 0.29 4.94 -17.43 -0.09 0.21 16 19 N -0.90 -27.49 10.94 55.49 0.61 -26.88 16 20 Si 0.90 23.34 29.58 -169.99 -5.03 18.31 16 21 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.29 -7.72 7.11 56.52 0.40 -7.32 16 23 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 24 C 0.17 4.14 4.60 -5.58 -0.03 4.12 16 25 C 0.12 2.32 3.98 -77.98 -0.31 2.01 16 26 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 27 C 0.36 6.09 7.77 -16.61 -0.13 5.96 16 28 O -0.47 -8.32 13.01 -17.96 -0.23 -8.56 16 29 N -0.51 -7.83 10.28 -9.21 -0.09 -7.92 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.43 8.07 -51.93 -0.42 0.01 16 33 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 35 H 0.08 1.11 7.19 -51.93 -0.37 0.74 16 36 H 0.08 0.68 8.10 -51.93 -0.42 0.26 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.99 8.04 -51.93 -0.42 0.57 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 1.35 7.68 -51.93 -0.40 0.95 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.06 1.17 7.87 -51.93 -0.41 0.76 16 43 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.03 0.79 8.00 -51.93 -0.42 0.38 16 45 H 0.10 3.02 4.95 -51.93 -0.26 2.76 16 46 H 0.41 6.18 9.06 45.56 0.41 6.59 16 LS Contribution 374.54 15.07 5.64 5.64 Total: -1.00 -36.21 374.54 -9.09 -45.29 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -6.05 Total: 4.11 kcal Atomic # 6 Polarization: 13.19 SS G_CDS: -2.86 Total: 10.33 kcal Atomic # 7 Polarization: -61.77 SS G_CDS: -0.65 Total: -62.42 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.15 Total: -21.27 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -5.03 Total: 18.31 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.21 -9.09 -45.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084559527.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.816 kcal (2) G-P(sol) polarization free energy of solvation -36.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds