Wall clock time and date at job start Tue Mar 31 2020 17:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38356 * 119.40624 * 2 1 4 4 C 1.38337 * 119.45544 * 180.02562 * 3 2 1 5 5 C 1.50697 * 120.82381 * 179.97438 * 4 3 2 6 6 C 1.39986 * 118.35126 * 359.97438 * 4 3 2 7 7 C 1.47524 * 120.59723 * 179.97438 * 6 4 3 8 8 O 1.21587 * 120.00054 * 270.02125 * 7 6 4 9 9 N 1.34781 * 120.00162 * 90.02316 * 7 6 4 10 10 C 1.47285 * 136.53748 * 0.02562 * 9 7 6 11 11 C 1.54085 * 87.60578 * 151.36743 * 10 9 7 12 12 H 1.09000 * 115.04849 * 142.50064 * 11 10 9 13 13 C 1.53063 * 111.38906 * 273.97075 * 11 10 9 14 14 C 1.53147 * 109.21322 * 142.39412 * 13 11 10 15 15 N 1.46535 * 108.25507 * 301.59020 * 14 13 11 16 16 C 1.36943 * 119.73774 * 236.44443 * 15 14 13 17 17 H 1.07999 * 120.00109 * 25.17230 * 16 15 14 18 18 C 1.38816 * 119.99573 * 205.17094 * 16 15 14 19 19 N 1.31617 * 119.99920 * 14.49524 * 18 16 15 20 20 Si 1.86794 * 119.99693 * 194.49014 * 18 16 15 21 21 H 1.48503 * 109.47248 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47223 * 120.00337 * 20 18 16 23 23 H 1.48507 * 109.47415 * 240.00354 * 20 18 16 24 24 C 1.45702 * 120.51966 * 56.41942 * 15 14 13 25 25 C 1.46465 * 136.54498 * 179.62546 * 9 7 6 26 26 H 1.09000 * 111.43487 * 96.38662 * 25 9 7 27 27 C 1.40281 * 118.80816 * 0.02562 * 6 4 3 28 28 O 1.35423 * 119.80201 * 179.97438 * 27 6 4 29 29 N 1.31886 * 119.40688 * 180.02562 * 2 1 3 30 30 H 1.09003 * 109.46826 * 90.00589 * 1 2 3 31 31 H 1.09000 * 109.47169 * 209.99935 * 1 2 3 32 32 H 1.08990 * 109.47170 * 330.00465 * 1 2 3 33 33 H 1.07994 * 120.27245 * 359.74058 * 3 2 1 34 34 H 1.09010 * 109.46965 * 89.99904 * 5 4 3 35 35 H 1.08995 * 109.47326 * 210.00090 * 5 4 3 36 36 H 1.09005 * 109.47165 * 330.00389 * 5 4 3 37 37 H 1.09004 * 113.52563 * 266.04409 * 10 9 7 38 38 H 1.08993 * 113.53476 * 36.67936 * 10 9 7 39 39 H 1.09003 * 109.51914 * 262.31858 * 13 11 10 40 40 H 1.09005 * 109.51639 * 22.47936 * 13 11 10 41 41 H 1.09003 * 109.70652 * 61.28247 * 14 13 11 42 42 H 1.09003 * 109.70803 * 181.89821 * 14 13 11 43 43 H 0.97007 * 119.99536 * 180.02562 * 19 18 16 44 44 H 1.08994 * 108.78561 * 80.90163 * 24 15 14 45 45 H 1.09000 * 108.78257 * 199.11076 * 24 15 14 46 46 H 0.96697 * 114.00452 * 270.02353 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2065 -0.0005 5 6 4.3408 2.5013 -0.0011 6 6 4.2355 -0.0249 -0.0005 7 6 5.7097 -0.0814 -0.0016 8 8 6.3164 -0.1048 -1.0551 9 7 6.3840 -0.1072 1.1651 10 6 6.0425 -0.0945 2.5977 11 6 7.3429 -0.8822 2.8485 12 1 7.8782 -0.6114 3.7586 13 6 7.1238 -2.3881 2.6843 14 6 8.3580 -3.0077 2.0224 15 7 8.5638 -2.3505 0.7290 16 6 8.6117 -3.1021 -0.4148 17 1 8.1169 -4.0614 -0.4517 18 6 9.2960 -2.6307 -1.5268 19 7 10.1283 -1.6182 -1.4069 20 14 9.0359 -3.4337 -3.1931 21 1 8.0568 -4.5425 -3.0609 22 1 8.5156 -2.4264 -4.1522 23 1 10.3279 -3.9704 -3.6912 24 6 8.7175 -0.9038 0.6502 25 6 7.7871 -0.1676 1.5810 26 1 8.1810 0.8251 1.7990 27 6 3.4758 -1.2042 -0.0005 28 8 4.0992 -2.4064 -0.0010 29 7 2.1546 -1.1489 -0.0005 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5137 33 1 1.6412 2.1375 -0.0042 34 1 4.5271 2.8137 1.0265 35 1 5.2911 2.3580 -0.5153 36 1 3.7618 3.2687 -0.5149 37 1 6.0465 0.9031 3.0371 38 1 5.1400 -0.6576 2.8350 39 1 6.9687 -2.8424 3.6630 40 1 6.2487 -2.5627 2.0583 41 1 9.2314 -2.8536 2.6562 42 1 8.1970 -4.0751 1.8709 43 1 10.6062 -1.2886 -2.1840 44 1 9.7460 -0.6458 0.9023 45 1 8.5186 -0.5849 -0.3729 46 1 4.2802 -2.7553 -0.8845 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084559527.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:09 Heat of formation + Delta-G solvation = 2.579731 kcal Electronic energy + Delta-G solvation = -30332.898307 eV Core-core repulsion = 26417.012490 eV Total energy + Delta-G solvation = -3915.885817 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.27827 -41.42367 -39.09330 -38.41916 -37.06346 -35.24617 -33.98520 -32.83051 -31.94104 -30.92841 -29.21580 -28.65650 -28.21040 -25.69918 -24.86614 -24.10122 -22.82203 -22.49546 -21.32991 -19.60565 -19.51387 -18.90200 -18.30456 -17.73199 -17.30960 -17.08795 -16.68475 -16.14826 -15.71461 -15.44032 -15.18431 -14.98535 -14.81922 -14.63909 -14.33334 -14.23515 -14.12582 -13.97473 -13.83809 -13.55758 -13.25219 -13.17419 -12.99045 -12.86499 -12.79107 -12.70371 -12.62957 -12.40471 -12.20262 -11.98688 -11.76255 -11.50877 -11.28929 -10.91011 -10.64749 -10.56550 -10.30759 -9.85764 -9.59238 -8.66412 -7.84890 -5.27299 -0.29441 0.01179 1.34106 1.39752 1.46075 1.57785 1.88957 2.26421 2.47876 2.64719 3.27300 3.30915 3.41051 3.53639 3.55461 3.72562 3.90682 3.98188 4.14662 4.17751 4.24990 4.42098 4.45969 4.48725 4.53893 4.56290 4.61778 4.67912 4.72840 4.78934 4.81339 4.90707 4.93347 5.00236 5.04495 5.08198 5.12154 5.16793 5.30339 5.41873 5.51608 5.57167 5.69862 5.82083 6.34333 6.40623 6.78069 6.87433 7.18580 7.20093 7.96896 8.35735 9.19906 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.012945 B = 0.004859 C = 0.004346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.394988 B = 5761.017807 C = 6441.085861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.157 3.843 3 C -0.172 4.172 4 C 0.002 3.998 5 C -0.118 4.118 6 C -0.210 4.210 7 C 0.600 3.400 8 O -0.578 6.578 9 N -0.624 5.624 10 C 0.109 3.891 11 C -0.099 4.099 12 H 0.137 0.863 13 C -0.107 4.107 14 C 0.143 3.857 15 N -0.600 5.600 16 C -0.251 4.251 17 H 0.058 0.942 18 C -0.043 4.043 19 N -0.932 5.932 20 Si 0.952 3.048 21 H -0.267 1.267 22 H -0.304 1.304 23 H -0.284 1.284 24 C 0.181 3.819 25 C 0.108 3.892 26 H 0.096 0.904 27 C 0.335 3.665 28 O -0.490 6.490 29 N -0.528 5.528 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.112 0.888 33 H 0.189 0.811 34 H 0.103 0.897 35 H 0.041 0.959 36 H 0.111 0.889 37 H 0.120 0.880 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.038 0.962 41 H 0.029 0.971 42 H 0.048 0.952 43 H 0.243 0.757 44 H -0.002 1.002 45 H 0.053 0.947 46 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.436 10.323 11.248 24.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.019 3.981 3 C -0.191 4.191 4 C -0.006 4.006 5 C -0.174 4.174 6 C -0.217 4.217 7 C 0.389 3.611 8 O -0.458 6.458 9 N -0.358 5.358 10 C -0.012 4.012 11 C -0.118 4.118 12 H 0.154 0.846 13 C -0.146 4.146 14 C 0.018 3.982 15 N -0.323 5.323 16 C -0.382 4.382 17 H 0.075 0.925 18 C -0.238 4.238 19 N -0.579 5.579 20 Si 0.782 3.218 21 H -0.191 1.191 22 H -0.232 1.232 23 H -0.211 1.211 24 C 0.054 3.946 25 C 0.004 3.996 26 H 0.114 0.886 27 C 0.157 3.843 28 O -0.299 6.299 29 N -0.249 5.249 30 H 0.113 0.887 31 H 0.093 0.907 32 H 0.131 0.869 33 H 0.206 0.794 34 H 0.121 0.879 35 H 0.060 0.940 36 H 0.129 0.871 37 H 0.138 0.862 38 H 0.092 0.908 39 H 0.113 0.887 40 H 0.057 0.943 41 H 0.047 0.953 42 H 0.066 0.934 43 H 0.052 0.948 44 H 0.016 0.984 45 H 0.071 0.929 46 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -19.567 9.602 10.984 24.407 hybrid contribution 1.249 -0.186 -2.146 2.490 sum -18.318 9.416 8.837 22.413 Atomic orbital electron populations 1.20922 0.85110 1.05193 1.04613 1.21981 0.98844 0.86674 0.90622 1.22173 0.92400 1.00964 1.03543 1.20604 0.94905 0.93618 0.91426 1.20954 0.99117 0.92855 1.04511 1.20901 0.93399 0.95569 1.11821 1.17520 0.86297 0.75372 0.81952 1.90865 1.70450 1.52222 1.32296 1.49492 1.09713 1.70774 1.05792 1.23501 0.98367 1.01616 0.77747 1.22725 0.96762 0.95077 0.97204 0.84565 1.21727 0.98017 0.94162 1.00677 1.20915 0.95496 0.95519 0.86270 1.43683 1.84545 1.01763 1.02358 1.19390 1.25149 1.02018 0.91609 0.92453 1.25554 0.97044 0.99574 1.01670 1.70174 1.29270 1.29811 1.28650 0.85418 0.77448 0.77646 0.81289 1.19139 1.23165 1.21106 1.19774 0.93173 0.83223 0.98410 1.22585 0.83211 0.99672 0.94159 0.88626 1.19182 0.86899 0.84425 0.93816 1.84638 1.77009 1.33220 1.35010 1.67123 1.08383 1.32285 1.17143 0.88734 0.90691 0.86928 0.79352 0.87913 0.93987 0.87084 0.86218 0.90800 0.88735 0.94282 0.95288 0.93354 0.94750 0.98396 0.92875 0.72910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.20 10.16 71.24 0.72 -0.48 16 2 C 0.16 3.33 6.78 42.58 0.29 3.62 16 3 C -0.17 -3.12 9.41 22.32 0.21 -2.91 16 4 C 0.00 0.06 5.95 -19.42 -0.12 -0.06 16 5 C -0.12 -2.40 9.69 71.23 0.69 -1.71 16 6 C -0.21 -7.21 5.50 -19.91 -0.11 -7.32 16 7 C 0.60 25.35 5.61 86.69 0.49 25.84 16 8 O -0.58 -31.48 16.35 -3.99 -0.07 -31.55 16 9 N -0.62 -23.08 3.34 -871.11 -2.91 -26.00 16 10 C 0.11 2.78 7.76 81.10 0.63 3.41 16 11 C -0.10 -2.81 4.57 -10.69 -0.05 -2.86 16 12 H 0.14 2.80 8.14 -2.39 -0.02 2.78 16 13 C -0.11 -3.55 5.69 30.66 0.17 -3.37 16 14 C 0.14 6.05 6.46 86.42 0.56 6.61 16 15 N -0.60 -32.07 3.03 -707.81 -2.14 -34.22 16 16 C -0.25 -15.09 9.53 84.03 0.80 -14.29 16 17 H 0.06 3.42 7.83 -2.91 -0.02 3.39 16 18 C -0.04 -2.67 4.94 84.86 0.42 -2.25 16 19 N -0.93 -60.13 10.94 21.65 0.24 -59.89 16 20 Si 0.95 50.49 29.58 68.60 2.03 52.52 16 21 H -0.27 -13.40 7.11 99.48 0.71 -12.69 16 22 H -0.30 -16.70 7.11 99.48 0.71 -15.99 16 23 H -0.28 -14.56 7.11 99.48 0.71 -13.85 16 24 C 0.18 9.44 4.60 85.81 0.39 9.83 16 25 C 0.11 4.11 3.98 38.50 0.15 4.27 16 26 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 27 C 0.34 11.65 7.77 85.13 0.66 12.31 16 28 O -0.49 -18.48 13.01 -87.18 -1.13 -19.62 16 29 N -0.53 -15.84 10.28 -296.06 -3.04 -18.88 16 30 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.11 0.58 8.07 -2.39 -0.02 0.56 16 33 H 0.19 1.59 8.06 -2.91 -0.02 1.56 16 34 H 0.10 1.62 8.14 -2.38 -0.02 1.61 16 35 H 0.04 1.19 7.19 -2.39 -0.02 1.17 16 36 H 0.11 1.49 8.10 -2.38 -0.02 1.47 16 37 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.07 1.87 8.04 -2.39 -0.02 1.85 16 39 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 40 H 0.04 1.53 7.68 -2.38 -0.02 1.51 16 41 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.05 2.06 7.87 -2.39 -0.02 2.04 16 43 H 0.24 15.36 8.31 -92.70 -0.77 14.59 16 44 H 0.00 -0.10 8.00 -2.39 -0.02 -0.12 16 45 H 0.05 3.33 4.95 -2.39 -0.01 3.32 16 46 H 0.41 13.88 9.06 -74.06 -0.67 13.21 16 Total: -1.00 -89.13 374.54 -0.78 -89.91 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: 0.33 Total: 17.08 kcal Atomic # 6 Polarization: 24.72 SS G_CDS: 5.92 Total: 30.64 kcal Atomic # 7 Polarization: -131.12 SS G_CDS: -7.86 Total: -138.98 kcal Atomic # 8 Polarization: -49.97 SS G_CDS: -1.20 Total: -51.17 kcal Atomic # 14 Polarization: 50.49 SS G_CDS: 2.03 Total: 52.52 kcal Total: -89.13 -0.78 -89.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084559527.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.488 kcal (2) G-P(sol) polarization free energy of solvation -89.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds