Wall clock time and date at job start Tue Mar 31 2020 16:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35687 * 116.99852 * 2 1 4 4 C 1.38891 * 119.62217 * 179.97438 * 3 2 1 5 5 C 1.39575 * 118.94447 * 180.02562 * 4 3 2 6 6 C 1.48165 * 120.89066 * 180.02562 * 5 4 3 7 7 O 1.21508 * 119.99751 * 6.56608 * 6 5 4 8 8 N 1.34772 * 120.00082 * 186.56694 * 6 5 4 9 9 C 1.47284 * 136.54393 * 5.20552 * 8 6 5 10 10 C 1.54365 * 87.50558 * 151.47718 * 9 8 6 11 11 H 1.08995 * 115.78829 * 141.80757 * 10 9 8 12 12 C 1.53060 * 111.57368 * 274.17589 * 10 9 8 13 13 C 1.53144 * 109.21077 * 142.37635 * 12 10 9 14 14 N 1.46541 * 108.25374 * 301.58720 * 13 12 10 15 15 C 1.36940 * 119.74088 * 236.39920 * 14 13 12 16 16 H 1.08000 * 119.99429 * 25.73069 * 15 14 13 17 17 C 1.38804 * 119.99936 * 205.72629 * 15 14 13 18 18 N 1.31620 * 120.00396 * 15.54899 * 17 15 14 19 19 Si 1.86801 * 119.99816 * 195.54612 * 17 15 14 20 20 H 1.48505 * 109.47267 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.47164 * 120.00172 * 19 17 15 22 22 H 1.48500 * 109.47333 * 240.00323 * 19 17 15 23 23 C 1.45696 * 120.52093 * 56.42404 * 14 13 12 24 24 C 1.46462 * 136.54342 * 185.58756 * 8 6 5 25 25 H 1.08997 * 111.44633 * 97.05986 * 24 8 6 26 26 C 1.39967 * 118.22096 * 359.75178 * 5 4 3 27 27 C 1.37986 * 119.12823 * 0.48975 * 26 5 4 28 28 C 1.50704 * 119.50723 * 179.77953 * 27 26 5 29 29 N 1.31907 * 120.97665 * 359.49511 * 27 26 5 30 30 H 1.09006 * 109.47093 * 300.00094 * 1 2 3 31 31 H 1.09005 * 109.47322 * 59.99723 * 1 2 3 32 32 H 1.08996 * 109.47320 * 179.97438 * 1 2 3 33 33 H 1.07994 * 120.52910 * 0.04310 * 4 3 2 34 34 H 1.08997 * 113.53516 * 266.10520 * 9 8 6 35 35 H 1.09006 * 113.52654 * 36.74510 * 9 8 6 36 36 H 1.08997 * 109.51930 * 22.45540 * 12 10 9 37 37 H 1.09004 * 109.55420 * 262.31990 * 12 10 9 38 38 H 1.09006 * 109.70690 * 181.90106 * 13 12 10 39 39 H 1.08998 * 109.74840 * 61.30177 * 13 12 10 40 40 H 0.96995 * 120.00032 * 179.97438 * 18 17 15 41 41 H 1.09005 * 108.78538 * 199.11439 * 23 14 13 42 42 H 1.08994 * 108.79247 * 80.89431 * 23 14 13 43 43 H 1.08000 * 120.43910 * 180.27222 * 26 5 4 44 44 H 1.08999 * 109.46390 * 269.72429 * 28 27 26 45 45 H 1.08996 * 109.46822 * 149.72727 * 28 27 26 46 46 H 1.08992 * 109.47233 * 29.72245 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4325 1.2726 0.0005 5 6 4.0513 2.5236 0.0011 6 6 5.5283 2.6417 0.0011 7 8 6.2171 1.6480 -0.1197 8 7 6.1076 3.8511 0.1351 9 6 5.6572 5.2299 0.3906 10 6 7.0290 5.4838 1.0514 11 1 7.4702 6.4632 0.8669 12 6 7.0279 5.0734 2.5260 13 6 8.3818 4.4492 2.8763 14 7 8.5968 3.2962 1.9979 15 6 8.8346 2.0624 2.5423 16 1 8.4708 1.8298 3.5322 17 6 9.5432 1.1108 1.8218 18 7 10.2438 1.4708 0.7673 19 14 9.5027 -0.6808 2.3489 20 1 8.6485 -0.8227 3.5555 21 1 8.9456 -1.5081 1.2486 22 1 10.8811 -1.1362 2.6615 23 6 8.5600 3.4523 0.5497 24 6 7.4689 4.3892 0.0858 25 1 7.6973 4.8064 -0.8949 26 6 3.2394 3.6637 -0.0043 27 6 1.8679 3.5116 0.0004 28 6 0.9856 4.7334 -0.0003 29 7 1.3178 2.3127 -0.0001 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 4.0231 0.3684 0.0003 34 1 5.4978 5.8110 -0.5176 35 1 4.8196 5.2924 1.0854 36 1 6.2354 4.3458 2.7010 37 1 6.8598 5.9519 3.1491 38 1 8.3781 4.1232 3.9165 39 1 9.1752 5.1808 2.7234 40 1 10.7393 0.8059 0.2641 41 1 8.3997 2.4745 0.0953 42 1 9.5217 3.8397 0.2138 43 1 3.6804 4.6495 -0.0085 44 1 0.7722 5.0278 1.0273 45 1 0.0518 4.5068 -0.5148 46 1 1.4948 5.5489 -0.5136 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084613410.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:44 Heat of formation + Delta-G solvation = 46.431540 kcal Electronic energy + Delta-G solvation = -29508.043755 eV Core-core repulsion = 25594.059496 eV Total energy + Delta-G solvation = -3913.984260 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.07195 -40.34580 -38.28178 -37.46192 -35.25818 -33.05632 -32.31037 -31.87243 -30.15416 -29.17266 -28.27073 -27.05605 -26.69980 -24.24769 -23.80816 -23.12745 -22.20861 -21.10505 -19.92243 -18.43101 -17.72145 -17.30812 -16.39062 -16.18240 -16.07788 -15.78633 -15.62986 -15.14061 -14.41876 -14.32926 -14.11833 -13.73848 -13.72780 -13.54697 -13.36924 -13.09183 -12.75883 -12.61676 -12.55250 -12.49307 -12.14488 -11.95578 -11.75564 -11.50591 -11.16124 -11.07932 -10.64942 -10.64048 -10.47942 -10.15958 -10.09029 -9.86276 -9.82161 -9.76330 -9.51088 -9.04968 -8.52555 -8.29284 -8.20422 -6.57043 -5.63800 -3.05392 0.76969 1.04676 2.81378 3.15467 3.23972 3.50367 3.59156 3.59632 3.87310 4.00568 4.40073 4.55116 4.64822 4.81237 4.92381 5.02335 5.11233 5.13231 5.14697 5.25077 5.34731 5.36843 5.42138 5.45066 5.46351 5.49889 5.61457 5.67051 5.71161 5.77946 5.86073 5.99006 6.10468 6.12024 6.24767 6.34951 6.37796 6.48754 6.57957 6.78409 6.99769 7.11016 7.47625 7.70510 7.76796 7.95731 8.19530 8.59053 8.61386 9.37810 10.02058 10.49281 11.44712 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.012020 B = 0.004425 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.838713 B = 6326.755418 C = 8010.971455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.305 6.305 3 C 0.321 3.679 4 C -0.140 4.140 5 C -0.033 4.033 6 C 0.579 3.421 7 O -0.495 6.495 8 N -0.623 5.623 9 C 0.088 3.912 10 C -0.112 4.112 11 H 0.094 0.906 12 C -0.116 4.116 13 C 0.148 3.852 14 N -0.584 5.584 15 C -0.252 4.252 16 H 0.062 0.938 17 C 0.013 3.987 18 N -0.904 5.904 19 Si 0.899 3.101 20 H -0.280 1.280 21 H -0.288 1.288 22 H -0.293 1.293 23 C 0.167 3.833 24 C 0.120 3.880 25 H 0.076 0.924 26 C -0.190 4.190 27 C 0.158 3.842 28 C -0.102 4.102 29 N -0.532 5.532 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.095 0.905 33 H 0.155 0.845 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.020 0.980 40 H 0.251 0.749 41 H 0.101 0.899 42 H 0.031 0.969 43 H 0.149 0.851 44 H 0.080 0.920 45 H 0.076 0.924 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.624 10.148 -2.793 21.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.212 6.212 3 C 0.142 3.858 4 C -0.162 4.162 5 C -0.043 4.043 6 C 0.367 3.633 7 O -0.369 6.369 8 N -0.359 5.359 9 C -0.036 4.036 10 C -0.131 4.131 11 H 0.112 0.888 12 C -0.156 4.156 13 C 0.022 3.978 14 N -0.306 5.306 15 C -0.381 4.381 16 H 0.080 0.920 17 C -0.185 4.185 18 N -0.548 5.548 19 Si 0.730 3.270 20 H -0.205 1.205 21 H -0.214 1.214 22 H -0.220 1.220 23 C 0.041 3.959 24 C 0.016 3.984 25 H 0.094 0.906 26 C -0.211 4.211 27 C 0.022 3.978 28 C -0.159 4.159 29 N -0.258 5.258 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.114 0.886 33 H 0.172 0.828 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.038 0.962 40 H 0.061 0.939 41 H 0.119 0.881 42 H 0.049 0.951 43 H 0.166 0.834 44 H 0.099 0.901 45 H 0.095 0.905 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -19.019 8.890 -2.998 21.207 hybrid contribution 0.459 -0.814 0.055 0.936 sum -18.560 8.077 -2.943 20.454 Atomic orbital electron populations 1.22844 0.77326 1.02892 1.02317 1.86283 1.22797 1.24206 1.87882 1.19569 0.88896 0.84543 0.92793 1.21157 0.91787 0.99404 1.03843 1.20299 0.94350 0.92922 0.96760 1.17370 0.85795 0.82023 0.78103 1.90898 1.63481 1.34922 1.47584 1.49246 1.11119 1.04914 1.70667 1.23559 0.98533 0.82246 0.99233 1.22825 0.95148 0.98639 0.96519 0.88752 1.21846 1.01421 0.99532 0.92770 1.20724 0.92438 0.90001 0.94686 1.43447 1.82795 1.04122 1.00256 1.19107 1.28415 0.89178 1.01422 0.92031 1.24895 0.96678 0.98627 0.98345 1.70017 1.31926 1.32291 1.20594 0.86273 0.76838 0.85939 0.77957 1.20499 1.21431 1.21978 1.20181 0.91621 0.99218 0.84890 1.22734 0.84950 0.93037 0.97641 0.90642 1.22382 0.93871 0.99918 1.04912 1.20824 0.91681 0.91803 0.93531 1.20725 0.99042 0.92804 1.03318 1.66932 1.41215 0.98462 1.19194 0.92336 0.92388 0.88649 0.82776 0.90058 0.90442 0.92145 0.92588 0.92593 0.96234 0.93884 0.88059 0.95081 0.83397 0.90123 0.90457 0.90340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.38 101.05 1.05 1.45 16 2 O -0.30 -4.26 10.47 -18.77 -0.20 -4.46 16 3 C 0.32 4.85 7.49 -17.16 -0.13 4.72 16 4 C -0.14 -2.35 9.61 -38.84 -0.37 -2.73 16 5 C -0.03 -0.55 5.91 -104.67 -0.62 -1.16 16 6 C 0.58 11.69 7.99 -12.19 -0.10 11.60 16 7 O -0.50 -12.50 15.63 5.36 0.08 -12.42 16 8 N -0.62 -11.02 3.31 -188.54 -0.62 -11.65 16 9 C 0.09 1.07 5.61 -11.40 -0.06 1.01 16 10 C -0.11 -1.61 4.57 -90.16 -0.41 -2.02 16 11 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 12 C -0.12 -1.88 5.71 -26.63 -0.15 -2.03 16 13 C 0.15 3.03 6.46 -3.94 -0.03 3.00 16 14 N -0.58 -14.87 3.02 -174.89 -0.53 -15.40 16 15 C -0.25 -7.25 9.51 -15.06 -0.14 -7.40 16 16 H 0.06 1.77 7.84 -52.49 -0.41 1.36 16 17 C 0.01 0.39 4.91 -17.43 -0.09 0.30 16 18 N -0.90 -27.49 11.04 55.49 0.61 -26.88 16 19 Si 0.90 23.66 29.58 -169.99 -5.03 18.63 16 20 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 21 H -0.29 -7.77 7.11 56.52 0.40 -7.37 16 22 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 23 C 0.17 4.10 4.56 -5.43 -0.02 4.07 16 24 C 0.12 2.21 4.03 -77.69 -0.31 1.90 16 25 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 26 C -0.19 -2.47 8.85 -39.03 -0.35 -2.82 16 27 C 0.16 1.89 6.78 -82.65 -0.56 1.33 16 28 C -0.10 -0.78 10.16 36.01 0.37 -0.42 16 29 N -0.53 -7.27 9.09 -9.59 -0.09 -7.36 16 30 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 31 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 32 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.15 2.73 7.75 -52.49 -0.41 2.32 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.08 0.84 6.64 -51.93 -0.34 0.49 16 36 H 0.06 1.10 7.69 -51.93 -0.40 0.70 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 1.14 7.87 -51.93 -0.41 0.73 16 39 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.10 2.94 5.01 -51.93 -0.26 2.68 16 42 H 0.03 0.82 7.99 -51.93 -0.41 0.41 16 43 H 0.15 1.57 4.37 -52.49 -0.23 1.34 16 44 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.08 0.46 8.07 -51.93 -0.42 0.04 16 LS Contribution 368.90 15.07 5.56 5.56 Total: -1.00 -35.63 368.90 -8.79 -44.42 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -6.65 Total: -1.27 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: -1.93 Total: 10.81 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: -0.63 Total: -61.28 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -0.11 Total: -16.87 kcal Atomic # 14 Polarization: 23.66 SS G_CDS: -5.03 Total: 18.63 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.63 -8.79 -44.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084613410.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.852 kcal (2) G-P(sol) polarization free energy of solvation -35.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds