Wall clock time and date at job start Tue Mar 31 2020 16:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35687 * 116.99852 * 2 1 4 4 C 1.38891 * 119.62217 * 179.97438 * 3 2 1 5 5 C 1.39575 * 118.94447 * 180.02562 * 4 3 2 6 6 C 1.48165 * 120.89066 * 180.02562 * 5 4 3 7 7 O 1.21508 * 119.99751 * 6.56608 * 6 5 4 8 8 N 1.34772 * 120.00082 * 186.56694 * 6 5 4 9 9 C 1.47284 * 136.54393 * 5.20552 * 8 6 5 10 10 C 1.54365 * 87.50558 * 151.47718 * 9 8 6 11 11 H 1.08995 * 115.78829 * 141.80757 * 10 9 8 12 12 C 1.53060 * 111.57368 * 274.17589 * 10 9 8 13 13 C 1.53144 * 109.21077 * 142.37635 * 12 10 9 14 14 N 1.46541 * 108.25374 * 301.58720 * 13 12 10 15 15 C 1.36940 * 119.74088 * 236.39920 * 14 13 12 16 16 H 1.08000 * 119.99429 * 25.73069 * 15 14 13 17 17 C 1.38804 * 119.99936 * 205.72629 * 15 14 13 18 18 N 1.31620 * 120.00396 * 15.54899 * 17 15 14 19 19 Si 1.86801 * 119.99816 * 195.54612 * 17 15 14 20 20 H 1.48505 * 109.47267 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.47164 * 120.00172 * 19 17 15 22 22 H 1.48500 * 109.47333 * 240.00323 * 19 17 15 23 23 C 1.45696 * 120.52093 * 56.42404 * 14 13 12 24 24 C 1.46462 * 136.54342 * 185.58756 * 8 6 5 25 25 H 1.08997 * 111.44633 * 97.05986 * 24 8 6 26 26 C 1.39967 * 118.22096 * 359.75178 * 5 4 3 27 27 C 1.37986 * 119.12823 * 0.48975 * 26 5 4 28 28 C 1.50704 * 119.50723 * 179.77953 * 27 26 5 29 29 N 1.31907 * 120.97665 * 359.49511 * 27 26 5 30 30 H 1.09006 * 109.47093 * 300.00094 * 1 2 3 31 31 H 1.09005 * 109.47322 * 59.99723 * 1 2 3 32 32 H 1.08996 * 109.47320 * 179.97438 * 1 2 3 33 33 H 1.07994 * 120.52910 * 0.04310 * 4 3 2 34 34 H 1.08997 * 113.53516 * 266.10520 * 9 8 6 35 35 H 1.09006 * 113.52654 * 36.74510 * 9 8 6 36 36 H 1.08997 * 109.51930 * 22.45540 * 12 10 9 37 37 H 1.09004 * 109.55420 * 262.31990 * 12 10 9 38 38 H 1.09006 * 109.70690 * 181.90106 * 13 12 10 39 39 H 1.08998 * 109.74840 * 61.30177 * 13 12 10 40 40 H 0.96995 * 120.00032 * 179.97438 * 18 17 15 41 41 H 1.09005 * 108.78538 * 199.11439 * 23 14 13 42 42 H 1.08994 * 108.79247 * 80.89431 * 23 14 13 43 43 H 1.08000 * 120.43910 * 180.27222 * 26 5 4 44 44 H 1.08999 * 109.46390 * 269.72429 * 28 27 26 45 45 H 1.08996 * 109.46822 * 149.72727 * 28 27 26 46 46 H 1.08992 * 109.47233 * 29.72245 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4325 1.2726 0.0005 5 6 4.0513 2.5236 0.0011 6 6 5.5283 2.6417 0.0011 7 8 6.2171 1.6480 -0.1197 8 7 6.1076 3.8511 0.1351 9 6 5.6572 5.2299 0.3906 10 6 7.0290 5.4838 1.0514 11 1 7.4702 6.4632 0.8669 12 6 7.0279 5.0734 2.5260 13 6 8.3818 4.4492 2.8763 14 7 8.5968 3.2962 1.9979 15 6 8.8346 2.0624 2.5423 16 1 8.4708 1.8298 3.5322 17 6 9.5432 1.1108 1.8218 18 7 10.2438 1.4708 0.7673 19 14 9.5027 -0.6808 2.3489 20 1 8.6485 -0.8227 3.5555 21 1 8.9456 -1.5081 1.2486 22 1 10.8811 -1.1362 2.6615 23 6 8.5600 3.4523 0.5497 24 6 7.4689 4.3892 0.0858 25 1 7.6973 4.8064 -0.8949 26 6 3.2394 3.6637 -0.0043 27 6 1.8679 3.5116 0.0004 28 6 0.9856 4.7334 -0.0003 29 7 1.3178 2.3127 -0.0001 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 4.0231 0.3684 0.0003 34 1 5.4978 5.8110 -0.5176 35 1 4.8196 5.2924 1.0854 36 1 6.2354 4.3458 2.7010 37 1 6.8598 5.9519 3.1491 38 1 8.3781 4.1232 3.9165 39 1 9.1752 5.1808 2.7234 40 1 10.7393 0.8059 0.2641 41 1 8.3997 2.4745 0.0953 42 1 9.5217 3.8397 0.2138 43 1 3.6804 4.6495 -0.0085 44 1 0.7722 5.0278 1.0273 45 1 0.0518 4.5068 -0.5148 46 1 1.4948 5.5489 -0.5136 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084613410.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:43 Heat of formation + Delta-G solvation = 19.346583 kcal Electronic energy + Delta-G solvation = -29509.218247 eV Core-core repulsion = 25594.059496 eV Total energy + Delta-G solvation = -3915.158752 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.30203 -41.54375 -39.50973 -38.79211 -37.10099 -34.25691 -33.96282 -33.02259 -31.93014 -30.59755 -29.21048 -28.66350 -27.60035 -25.84128 -25.32210 -24.37702 -23.44243 -22.64081 -21.23397 -19.72914 -19.27750 -18.61675 -17.86462 -17.42944 -17.29124 -17.12018 -16.92422 -16.64325 -16.15783 -15.66570 -15.29398 -15.26377 -15.02692 -14.85867 -14.70517 -14.36876 -14.28849 -14.08955 -13.60379 -13.34869 -13.26047 -13.17151 -13.03159 -12.78656 -12.71832 -12.68751 -12.33942 -12.20898 -12.05696 -11.98960 -11.75938 -11.49631 -11.34329 -11.01062 -10.86389 -10.68017 -10.41489 -9.60091 -9.55260 -8.66880 -7.87187 -5.29634 -0.42909 -0.01022 1.31618 1.39466 1.44145 1.64648 1.84215 2.10062 2.46397 2.67815 3.07918 3.25395 3.28596 3.40418 3.73012 3.79775 3.86406 3.91042 3.98370 4.23758 4.35989 4.40049 4.42883 4.45872 4.46893 4.51758 4.57951 4.69142 4.69844 4.74350 4.79149 4.86819 4.90868 4.93608 5.00391 5.06519 5.09939 5.14112 5.32772 5.40193 5.44565 5.56086 5.71350 5.81416 6.10960 6.39047 6.66030 6.82845 7.14663 7.18981 7.96794 8.33713 9.17086 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.012020 B = 0.004425 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.838713 B = 6326.755418 C = 8010.971455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.324 6.324 3 C 0.318 3.682 4 C -0.175 4.175 5 C -0.046 4.046 6 C 0.568 3.432 7 O -0.572 6.572 8 N -0.628 5.628 9 C 0.099 3.901 10 C -0.098 4.098 11 H 0.140 0.860 12 C -0.106 4.106 13 C 0.138 3.862 14 N -0.602 5.602 15 C -0.254 4.254 16 H 0.056 0.944 17 C -0.041 4.041 18 N -0.930 5.930 19 Si 0.949 3.051 20 H -0.271 1.271 21 H -0.304 1.304 22 H -0.281 1.281 23 C 0.179 3.821 24 C 0.104 3.896 25 H 0.101 0.899 26 C -0.176 4.176 27 C 0.166 3.834 28 C -0.099 4.099 29 N -0.530 5.530 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.131 0.869 35 H 0.105 0.895 36 H 0.037 0.963 37 H 0.104 0.896 38 H 0.047 0.953 39 H 0.030 0.970 40 H 0.244 0.756 41 H 0.046 0.954 42 H -0.002 1.002 43 H 0.182 0.818 44 H 0.099 0.901 45 H 0.083 0.917 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.098 14.739 -2.332 26.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.232 6.232 3 C 0.140 3.860 4 C -0.197 4.197 5 C -0.056 4.056 6 C 0.358 3.642 7 O -0.451 6.451 8 N -0.362 5.362 9 C -0.022 4.022 10 C -0.117 4.117 11 H 0.158 0.842 12 C -0.145 4.145 13 C 0.013 3.987 14 N -0.325 5.325 15 C -0.385 4.385 16 H 0.073 0.927 17 C -0.236 4.236 18 N -0.577 5.577 19 Si 0.778 3.222 20 H -0.195 1.195 21 H -0.232 1.232 22 H -0.208 1.208 23 C 0.053 3.947 24 C 0.000 4.000 25 H 0.119 0.881 26 C -0.196 4.196 27 C 0.029 3.971 28 C -0.156 4.156 29 N -0.256 5.256 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.148 0.852 35 H 0.123 0.877 36 H 0.056 0.944 37 H 0.122 0.878 38 H 0.066 0.934 39 H 0.048 0.952 40 H 0.053 0.947 41 H 0.065 0.935 42 H 0.016 0.984 43 H 0.199 0.801 44 H 0.117 0.883 45 H 0.101 0.899 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -22.532 13.559 -2.498 26.416 hybrid contribution 1.498 -2.162 -0.043 2.631 sum -21.034 11.397 -2.541 24.058 Atomic orbital electron populations 1.23135 0.75073 1.04829 1.02755 1.86261 1.25105 1.24112 1.87688 1.19503 0.88274 0.85468 0.92728 1.21029 0.92834 0.98892 1.06926 1.20099 0.92560 0.94291 0.98692 1.18004 0.87128 0.81989 0.77122 1.90856 1.65365 1.37633 1.51256 1.49428 1.11322 1.06418 1.69030 1.23904 0.98025 0.78561 1.01674 1.22872 0.96317 0.98504 0.93994 0.84207 1.21732 0.97177 1.00383 0.95199 1.20985 0.95602 0.88662 0.93426 1.43693 1.82946 1.04602 1.01284 1.19360 1.26951 0.91090 1.01082 0.92654 1.25520 0.97402 1.01719 0.98969 1.70159 1.33196 1.32618 1.21700 0.85482 0.77218 0.82246 0.77224 1.19522 1.23223 1.20760 1.19799 0.92752 0.97953 0.84229 1.22820 0.83623 0.93216 1.00314 0.88106 1.22662 0.93896 0.99655 1.03398 1.21713 0.92092 0.92654 0.90651 1.20923 0.98604 0.91084 1.04978 1.67117 1.40764 0.98649 1.19094 0.91911 0.91774 0.86110 0.85934 0.85152 0.87728 0.94394 0.87785 0.93442 0.95186 0.94702 0.93533 0.98407 0.80132 0.88263 0.89857 0.87292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.67 10.38 113.37 1.18 1.84 16 2 O -0.32 -9.27 10.47 -90.06 -0.94 -10.21 16 3 C 0.32 9.75 7.49 84.80 0.63 10.38 16 4 C -0.17 -6.28 9.61 22.75 0.22 -6.06 16 5 C -0.05 -1.55 5.91 -19.90 -0.12 -1.66 16 6 C 0.57 23.79 7.99 86.88 0.69 24.49 16 7 O -0.57 -31.62 15.63 -3.74 -0.06 -31.67 16 8 N -0.63 -21.30 3.31 -868.72 -2.87 -24.18 16 9 C 0.10 1.83 5.61 81.18 0.46 2.29 16 10 C -0.10 -2.33 4.57 -10.49 -0.05 -2.37 16 11 H 0.14 2.23 8.14 -2.39 -0.02 2.21 16 12 C -0.11 -3.02 5.71 30.66 0.17 -2.85 16 13 C 0.14 5.52 6.46 86.42 0.56 6.08 16 14 N -0.60 -31.66 3.02 -707.24 -2.14 -33.80 16 15 C -0.25 -15.37 9.51 84.03 0.80 -14.57 16 16 H 0.06 3.33 7.84 -2.91 -0.02 3.30 16 17 C -0.04 -2.54 4.91 84.86 0.42 -2.12 16 18 N -0.93 -60.37 11.04 21.65 0.24 -60.13 16 19 Si 0.95 51.46 29.58 68.60 2.03 53.49 16 20 H -0.27 -14.06 7.11 99.48 0.71 -13.36 16 21 H -0.30 -17.21 7.11 99.48 0.71 -16.50 16 22 H -0.28 -14.56 7.11 99.48 0.71 -13.86 16 23 C 0.18 9.18 4.56 85.91 0.39 9.57 16 24 C 0.10 3.70 4.03 38.69 0.16 3.86 16 25 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 26 C -0.18 -3.97 8.85 22.63 0.20 -3.77 16 27 C 0.17 3.35 6.78 42.49 0.29 3.63 16 28 C -0.10 -0.94 10.16 71.24 0.72 -0.22 16 29 N -0.53 -13.41 9.09 -297.16 -2.70 -16.12 16 30 H 0.06 1.09 8.10 -2.38 -0.02 1.07 16 31 H 0.06 1.09 8.10 -2.38 -0.02 1.07 16 32 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.12 5.02 7.75 -2.91 -0.02 5.00 16 34 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.10 1.48 6.64 -2.38 -0.02 1.47 16 36 H 0.04 1.26 7.69 -2.39 -0.02 1.24 16 37 H 0.10 2.06 8.14 -2.38 -0.02 2.04 16 38 H 0.05 1.93 7.87 -2.38 -0.02 1.91 16 39 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.24 15.50 8.31 -92.71 -0.77 14.73 16 41 H 0.05 2.91 5.01 -2.38 -0.01 2.90 16 42 H 0.00 -0.10 7.99 -2.39 -0.02 -0.12 16 43 H 0.18 2.70 4.37 -2.91 -0.01 2.69 16 44 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.11 0.45 8.07 -2.39 -0.02 0.43 16 Total: -1.00 -90.67 368.90 1.27 -89.39 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: 0.99 Total: 4.70 kcal Atomic # 6 Polarization: 21.80 SS G_CDS: 6.72 Total: 28.52 kcal Atomic # 7 Polarization: -126.75 SS G_CDS: -7.47 Total: -134.22 kcal Atomic # 8 Polarization: -40.88 SS G_CDS: -1.00 Total: -41.89 kcal Atomic # 14 Polarization: 51.46 SS G_CDS: 2.03 Total: 53.49 kcal Total: -90.67 1.27 -89.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084613410.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.741 kcal (2) G-P(sol) polarization free energy of solvation -90.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds