Wall clock time and date at job start Tue Mar 31 2020 16:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35429 * 116.99981 * 2 1 4 4 N 1.32235 * 119.79953 * 0.25101 * 3 2 1 5 5 C 1.31883 * 121.80187 * 180.29305 * 4 3 2 6 6 C 1.50696 * 119.40794 * 179.69955 * 5 4 3 7 7 C 1.38357 * 121.18067 * 359.71788 * 5 4 3 8 8 C 1.38336 * 119.46095 * 359.97438 * 7 5 4 9 9 C 1.39981 * 118.34923 * 0.02562 * 8 7 5 10 10 C 1.47527 * 120.59625 * 179.97438 * 9 8 7 11 11 O 1.21597 * 119.99817 * 186.54146 * 10 9 8 12 12 N 1.34770 * 120.00104 * 6.81519 * 10 9 8 13 13 C 1.47288 * 136.53868 * 4.99035 * 12 10 9 14 14 C 1.54399 * 87.48857 * 151.45042 * 13 12 10 15 15 H 1.09003 * 114.91200 * 141.75288 * 14 13 12 16 16 C 1.53057 * 111.61312 * 274.18720 * 14 13 12 17 17 C 1.53143 * 109.21477 * 142.38579 * 16 14 13 18 18 N 1.46544 * 108.24916 * 301.58196 * 17 16 14 19 19 C 1.36928 * 119.74136 * 236.44502 * 18 17 16 20 20 H 1.08008 * 120.00151 * 25.71193 * 19 18 17 21 21 C 1.38815 * 120.00375 * 205.71714 * 19 18 17 22 22 N 1.31625 * 119.99771 * 15.59508 * 21 19 18 23 23 Si 1.86796 * 120.00084 * 195.60067 * 21 19 18 24 24 H 1.48493 * 109.47485 * 89.99956 * 23 21 19 25 25 H 1.48507 * 109.46684 * 209.99736 * 23 21 19 26 26 H 1.48501 * 109.47408 * 329.99322 * 23 21 19 27 27 C 1.45707 * 120.51761 * 56.42344 * 18 17 16 28 28 C 1.46467 * 136.54183 * 185.35307 * 12 10 9 29 29 H 1.08995 * 111.43587 * 96.36902 * 28 12 10 30 30 H 1.09000 * 109.47165 * 299.99549 * 1 2 3 31 31 H 1.08991 * 109.47263 * 60.00200 * 1 2 3 32 32 H 1.09005 * 109.46736 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.46986 * 270.01576 * 6 5 4 34 34 H 1.09000 * 109.47564 * 30.01446 * 6 5 4 35 35 H 1.09000 * 109.47357 * 150.01856 * 6 5 4 36 36 H 1.08007 * 120.26558 * 179.97438 * 7 5 4 37 37 H 1.08003 * 120.82071 * 180.02562 * 8 7 5 38 38 H 1.09003 * 113.52890 * 266.06506 * 13 12 10 39 39 H 1.08999 * 113.53390 * 36.70310 * 13 12 10 40 40 H 1.09002 * 109.51725 * 262.31127 * 16 14 13 41 41 H 1.09002 * 109.51096 * 22.46607 * 16 14 13 42 42 H 1.08998 * 109.70817 * 61.27106 * 17 16 14 43 43 H 1.09001 * 109.71013 * 181.85095 * 17 16 14 44 44 H 0.96994 * 120.00190 * 180.02562 * 22 21 19 45 45 H 1.09008 * 108.78186 * 199.11883 * 27 18 17 46 46 H 1.08990 * 108.78937 * 80.91089 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2067 0.0000 4 7 1.3197 2.3132 0.0050 5 6 1.8770 3.5085 -0.0005 6 6 0.9999 4.7338 -0.0012 7 6 3.2525 3.6575 -0.0061 8 6 4.0587 2.5333 -0.0053 9 6 3.4449 1.2753 0.0006 10 6 4.2570 0.0436 0.0012 11 8 3.7178 -1.0402 -0.1137 12 7 5.5960 0.1193 0.1345 13 6 6.5871 1.1796 0.3850 14 6 7.4704 0.1026 1.0511 15 1 8.5384 0.1997 0.8563 16 6 7.1106 -0.0882 2.5265 17 6 7.2163 -1.5738 2.8831 18 7 6.3094 -2.3215 2.0079 19 6 5.3425 -3.1214 2.5558 20 1 4.9634 -2.9102 3.5449 21 6 4.8496 -4.2040 1.8402 22 7 5.5030 -4.6500 0.7883 23 14 3.2590 -5.0276 2.3701 24 1 2.1124 -4.3735 1.6901 25 1 3.2990 -6.4654 2.0003 26 1 3.1010 -4.8991 3.8411 27 6 6.4281 -2.2199 0.5592 28 6 6.7234 -0.8146 0.0894 29 1 7.1910 -0.8272 -0.8950 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 0.7846 5.0260 -1.0291 34 1 0.0665 4.5130 0.5167 35 1 1.5139 5.5490 0.5081 36 1 3.6932 4.6436 -0.0110 37 1 5.1349 2.6242 -0.0091 38 1 7.0197 1.5948 -0.5253 39 1 6.2382 1.9471 1.0758 40 1 7.7999 0.4850 3.1465 41 1 6.0911 0.2562 2.7001 42 1 8.2397 -1.9164 2.7307 43 1 6.9299 -1.7233 3.9241 44 1 5.1585 -5.4062 0.2880 45 1 5.4940 -2.5525 0.1064 46 1 7.2308 -2.8775 0.2258 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084705417.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:48 Heat of formation + Delta-G solvation = 49.372756 kcal Electronic energy + Delta-G solvation = -30004.860643 eV Core-core repulsion = 26091.003924 eV Total energy + Delta-G solvation = -3913.856719 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.00037 -40.18222 -37.94679 -37.31866 -35.17117 -33.20579 -32.04210 -31.79264 -30.06992 -29.17244 -28.26050 -26.99494 -26.52125 -23.93971 -23.48423 -22.78487 -22.43820 -20.98270 -20.10096 -18.20687 -17.77746 -17.14895 -16.76726 -16.04390 -16.00154 -15.62196 -15.18866 -14.68092 -14.24835 -14.19416 -14.06851 -13.91844 -13.58545 -13.39898 -13.21316 -13.02421 -12.65352 -12.60767 -12.37553 -12.27118 -12.21852 -11.86524 -11.60011 -11.41826 -11.03605 -10.99190 -10.58844 -10.56843 -10.41200 -10.12196 -9.98194 -9.89140 -9.77968 -9.69993 -9.41038 -8.84479 -8.41758 -8.21080 -8.01386 -6.50672 -5.57537 -2.98927 0.74790 1.22843 3.14399 3.24428 3.31174 3.54650 3.60432 3.65096 4.01050 4.04810 4.50465 4.67613 4.71058 4.74336 4.87573 5.09598 5.17950 5.23690 5.30676 5.31987 5.38512 5.41015 5.43054 5.52158 5.56526 5.67341 5.68699 5.71895 5.76282 5.82549 5.92144 5.95328 6.17312 6.20457 6.31785 6.40183 6.43708 6.56550 6.64762 6.83918 7.05490 7.34101 7.55996 7.76953 7.84590 8.02117 8.38667 8.66006 8.88549 9.44106 10.08592 10.55882 11.50896 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.011846 B = 0.005133 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.013843 B = 5453.611746 C = 7167.380463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.264 6.264 3 C 0.375 3.625 4 N -0.548 5.548 5 C 0.182 3.818 6 C -0.105 4.105 7 C -0.225 4.225 8 C -0.019 4.019 9 C -0.198 4.198 10 C 0.585 3.415 11 O -0.485 6.485 12 N -0.631 5.631 13 C 0.085 3.915 14 C -0.110 4.110 15 H 0.092 0.908 16 C -0.115 4.115 17 C 0.149 3.851 18 N -0.583 5.583 19 C -0.251 4.251 20 H 0.060 0.940 21 C 0.014 3.986 22 N -0.904 5.904 23 Si 0.899 3.101 24 H -0.285 1.285 25 H -0.293 1.293 26 H -0.282 1.282 27 C 0.168 3.832 28 C 0.121 3.879 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.139 0.861 37 H 0.152 0.848 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.054 0.946 41 H 0.060 0.940 42 H 0.019 0.981 43 H 0.055 0.945 44 H 0.251 0.749 45 H 0.102 0.898 46 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.752 20.789 -2.966 21.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.167 6.167 3 C 0.194 3.806 4 N -0.274 5.274 5 C 0.045 3.955 6 C -0.163 4.163 7 C -0.245 4.245 8 C -0.045 4.045 9 C -0.205 4.205 10 C 0.373 3.627 11 O -0.358 6.358 12 N -0.368 5.368 13 C -0.038 4.038 14 C -0.130 4.130 15 H 0.110 0.890 16 C -0.155 4.155 17 C 0.022 3.978 18 N -0.305 5.305 19 C -0.380 4.380 20 H 0.078 0.922 21 C -0.184 4.184 22 N -0.548 5.548 23 Si 0.729 3.271 24 H -0.212 1.212 25 H -0.220 1.220 26 H -0.208 1.208 27 C 0.041 3.959 28 C 0.017 3.983 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.116 0.884 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.157 0.843 37 H 0.169 0.831 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.037 0.963 43 H 0.073 0.927 44 H 0.061 0.939 45 H 0.120 0.880 46 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -3.181 19.600 -3.159 20.107 hybrid contribution -0.216 -0.055 0.042 0.227 sum -3.397 19.546 -3.116 20.082 Atomic orbital electron populations 1.22929 0.77848 1.03318 1.01833 1.86631 1.22067 1.22674 1.85336 1.19857 0.88228 0.84860 0.87611 1.67256 1.40357 0.98195 1.21568 1.21104 0.92145 0.91941 0.90350 1.20778 0.99350 0.92846 1.03291 1.21686 0.93855 0.99718 1.09275 1.22078 1.01341 0.90476 0.90559 1.20190 0.91487 0.95413 1.13366 1.17091 0.79644 0.87920 0.78037 1.90938 1.69627 1.28123 1.47129 1.49275 1.03267 1.12141 1.72111 1.23543 0.88411 0.92901 0.98991 1.22812 0.98056 0.95622 0.96481 0.89003 1.21829 1.00664 1.00232 0.92735 1.20710 0.93281 0.89133 0.94654 1.43428 1.35382 1.51430 1.00290 1.19055 1.12982 1.04486 1.01484 0.92189 1.24873 0.98845 0.96331 0.98369 1.70014 1.37687 1.26279 1.20866 0.86351 0.84875 0.78063 0.77804 1.21169 1.22005 1.20809 1.20183 1.03177 0.87729 0.84769 1.22643 0.82790 0.95489 0.97379 0.90960 0.92430 0.92506 0.88383 0.90050 0.90337 0.90296 0.84308 0.83111 0.90338 0.90826 0.92707 0.92128 0.96304 0.92672 0.93918 0.88041 0.95284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.38 101.05 1.05 1.58 16 2 O -0.26 -5.23 8.60 -39.65 -0.34 -5.57 16 3 C 0.37 6.77 7.50 -16.61 -0.12 6.65 16 4 N -0.55 -8.30 9.11 -9.21 -0.08 -8.39 16 5 C 0.18 2.17 6.78 -82.53 -0.56 1.61 16 6 C -0.11 -0.80 10.16 36.00 0.37 -0.44 16 7 C -0.22 -2.43 9.71 -39.50 -0.38 -2.81 16 8 C -0.02 -0.25 9.25 -38.89 -0.36 -0.61 16 9 C -0.20 -3.52 5.90 -104.69 -0.62 -4.14 16 10 C 0.59 12.57 7.96 -12.48 -0.10 12.47 16 11 O -0.49 -12.96 14.39 -16.40 -0.24 -13.20 16 12 N -0.63 -11.77 3.30 -188.68 -0.62 -12.39 16 13 C 0.09 1.11 5.60 -11.35 -0.06 1.04 16 14 C -0.11 -1.67 4.57 -90.14 -0.41 -2.08 16 15 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 16 C -0.12 -1.94 5.71 -26.63 -0.15 -2.09 16 17 C 0.15 3.14 6.46 -3.94 -0.03 3.11 16 18 N -0.58 -15.26 3.02 -174.89 -0.53 -15.79 16 19 C -0.25 -7.39 9.51 -15.06 -0.14 -7.53 16 20 H 0.06 1.76 7.84 -52.48 -0.41 1.35 16 21 C 0.01 0.43 4.91 -17.43 -0.09 0.35 16 22 N -0.90 -28.02 11.05 55.49 0.61 -27.41 16 23 Si 0.90 24.08 29.58 -169.99 -5.03 19.05 16 24 H -0.28 -7.88 7.11 56.52 0.40 -7.47 16 25 H -0.29 -7.76 7.11 56.52 0.40 -7.36 16 26 H -0.28 -7.32 7.11 56.52 0.40 -6.91 16 27 C 0.17 4.24 4.56 -5.43 -0.02 4.22 16 28 C 0.12 2.33 4.03 -77.66 -0.31 2.02 16 29 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 31 H 0.06 0.74 8.11 -51.93 -0.42 0.31 16 32 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.43 8.07 -51.93 -0.42 0.01 16 36 H 0.14 1.00 8.06 -52.48 -0.42 0.57 16 37 H 0.15 1.62 4.33 -52.48 -0.23 1.39 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.84 6.60 -51.93 -0.34 0.49 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.06 1.14 7.69 -51.93 -0.40 0.75 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.05 1.16 7.88 -51.93 -0.41 0.75 16 44 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 45 H 0.10 3.04 5.01 -51.92 -0.26 2.78 16 46 H 0.03 0.79 7.99 -51.93 -0.41 0.37 16 LS Contribution 366.51 15.07 5.52 5.52 Total: -1.00 -37.48 366.51 -9.32 -46.80 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -6.67 Total: -1.97 kcal Atomic # 6 Polarization: 15.28 SS G_CDS: -1.95 Total: 13.33 kcal Atomic # 7 Polarization: -63.35 SS G_CDS: -0.62 Total: -63.97 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: -0.58 Total: -18.77 kcal Atomic # 14 Polarization: 24.08 SS G_CDS: -5.03 Total: 19.05 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -37.48 -9.32 -46.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084705417.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.176 kcal (2) G-P(sol) polarization free energy of solvation -37.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds