Wall clock time and date at job start Tue Mar 31 2020 16:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35429 * 116.99981 * 2 1 4 4 N 1.32235 * 119.79953 * 0.25101 * 3 2 1 5 5 C 1.31883 * 121.80187 * 180.29305 * 4 3 2 6 6 C 1.50696 * 119.40794 * 179.69955 * 5 4 3 7 7 C 1.38357 * 121.18067 * 359.71788 * 5 4 3 8 8 C 1.38336 * 119.46095 * 359.97438 * 7 5 4 9 9 C 1.39981 * 118.34923 * 0.02562 * 8 7 5 10 10 C 1.47527 * 120.59625 * 179.97438 * 9 8 7 11 11 O 1.21597 * 119.99817 * 186.54146 * 10 9 8 12 12 N 1.34770 * 120.00104 * 6.81519 * 10 9 8 13 13 C 1.47288 * 136.53868 * 4.99035 * 12 10 9 14 14 C 1.54399 * 87.48857 * 151.45042 * 13 12 10 15 15 H 1.09003 * 114.91200 * 141.75288 * 14 13 12 16 16 C 1.53057 * 111.61312 * 274.18720 * 14 13 12 17 17 C 1.53143 * 109.21477 * 142.38579 * 16 14 13 18 18 N 1.46544 * 108.24916 * 301.58196 * 17 16 14 19 19 C 1.36928 * 119.74136 * 236.44502 * 18 17 16 20 20 H 1.08008 * 120.00151 * 25.71193 * 19 18 17 21 21 C 1.38815 * 120.00375 * 205.71714 * 19 18 17 22 22 N 1.31625 * 119.99771 * 15.59508 * 21 19 18 23 23 Si 1.86796 * 120.00084 * 195.60067 * 21 19 18 24 24 H 1.48493 * 109.47485 * 89.99956 * 23 21 19 25 25 H 1.48507 * 109.46684 * 209.99736 * 23 21 19 26 26 H 1.48501 * 109.47408 * 329.99322 * 23 21 19 27 27 C 1.45707 * 120.51761 * 56.42344 * 18 17 16 28 28 C 1.46467 * 136.54183 * 185.35307 * 12 10 9 29 29 H 1.08995 * 111.43587 * 96.36902 * 28 12 10 30 30 H 1.09000 * 109.47165 * 299.99549 * 1 2 3 31 31 H 1.08991 * 109.47263 * 60.00200 * 1 2 3 32 32 H 1.09005 * 109.46736 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.46986 * 270.01576 * 6 5 4 34 34 H 1.09000 * 109.47564 * 30.01446 * 6 5 4 35 35 H 1.09000 * 109.47357 * 150.01856 * 6 5 4 36 36 H 1.08007 * 120.26558 * 179.97438 * 7 5 4 37 37 H 1.08003 * 120.82071 * 180.02562 * 8 7 5 38 38 H 1.09003 * 113.52890 * 266.06506 * 13 12 10 39 39 H 1.08999 * 113.53390 * 36.70310 * 13 12 10 40 40 H 1.09002 * 109.51725 * 262.31127 * 16 14 13 41 41 H 1.09002 * 109.51096 * 22.46607 * 16 14 13 42 42 H 1.08998 * 109.70817 * 61.27106 * 17 16 14 43 43 H 1.09001 * 109.71013 * 181.85095 * 17 16 14 44 44 H 0.96994 * 120.00190 * 180.02562 * 22 21 19 45 45 H 1.09008 * 108.78186 * 199.11883 * 27 18 17 46 46 H 1.08990 * 108.78937 * 80.91089 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2067 0.0000 4 7 1.3197 2.3132 0.0050 5 6 1.8770 3.5085 -0.0005 6 6 0.9999 4.7338 -0.0012 7 6 3.2525 3.6575 -0.0061 8 6 4.0587 2.5333 -0.0053 9 6 3.4449 1.2753 0.0006 10 6 4.2570 0.0436 0.0012 11 8 3.7178 -1.0402 -0.1137 12 7 5.5960 0.1193 0.1345 13 6 6.5871 1.1796 0.3850 14 6 7.4704 0.1026 1.0511 15 1 8.5384 0.1997 0.8563 16 6 7.1106 -0.0882 2.5265 17 6 7.2163 -1.5738 2.8831 18 7 6.3094 -2.3215 2.0079 19 6 5.3425 -3.1214 2.5558 20 1 4.9634 -2.9102 3.5449 21 6 4.8496 -4.2040 1.8402 22 7 5.5030 -4.6500 0.7883 23 14 3.2590 -5.0276 2.3701 24 1 2.1124 -4.3735 1.6901 25 1 3.2990 -6.4654 2.0003 26 1 3.1010 -4.8991 3.8411 27 6 6.4281 -2.2199 0.5592 28 6 6.7234 -0.8146 0.0894 29 1 7.1910 -0.8272 -0.8950 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 0.7846 5.0260 -1.0291 34 1 0.0665 4.5130 0.5167 35 1 1.5139 5.5490 0.5081 36 1 3.6932 4.6436 -0.0110 37 1 5.1349 2.6242 -0.0091 38 1 7.0197 1.5948 -0.5253 39 1 6.2382 1.9471 1.0758 40 1 7.7999 0.4850 3.1465 41 1 6.0911 0.2562 2.7001 42 1 8.2397 -1.9164 2.7307 43 1 6.9299 -1.7233 3.9241 44 1 5.1585 -5.4062 0.2880 45 1 5.4940 -2.5525 0.1064 46 1 7.2308 -2.8775 0.2258 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084705417.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:47 Heat of formation + Delta-G solvation = 21.191337 kcal Electronic energy + Delta-G solvation = -30006.082681 eV Core-core repulsion = 26091.003924 eV Total energy + Delta-G solvation = -3915.078757 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.24461 -41.45212 -39.12091 -38.89838 -37.05678 -34.39413 -33.84220 -32.78141 -31.90209 -30.62410 -29.34800 -28.65880 -27.65562 -25.76624 -24.86282 -23.88830 -23.75996 -22.50057 -21.51465 -19.67501 -19.22410 -18.66483 -17.93006 -17.62532 -17.40268 -17.10570 -16.72364 -16.15736 -15.66084 -15.65465 -15.24166 -15.19308 -15.08863 -14.90411 -14.54387 -14.51572 -14.16678 -13.82465 -13.52417 -13.46163 -13.30439 -13.15603 -13.01586 -12.80343 -12.71973 -12.70325 -12.30478 -12.20722 -12.07839 -11.97259 -11.71749 -11.48627 -11.21454 -10.95874 -10.81631 -10.61445 -10.28164 -9.63132 -9.34607 -8.65792 -7.85603 -5.28244 -0.33375 0.21238 1.30363 1.41810 1.42043 1.91278 1.97885 2.07924 2.47600 2.77912 3.07442 3.29499 3.41349 3.55475 3.71292 3.75217 3.87795 3.97932 4.18567 4.22373 4.26341 4.27948 4.32748 4.46042 4.51214 4.56694 4.61825 4.68835 4.70861 4.77786 4.81258 4.83177 4.93363 4.96132 5.00998 5.08170 5.13007 5.16323 5.33691 5.44970 5.50018 5.55934 5.73132 5.83442 6.21079 6.40080 6.71789 6.98511 7.20084 7.39600 7.98001 8.35231 9.18457 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.011846 B = 0.005133 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.013843 B = 5453.611746 C = 7167.380463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.311 6.311 3 C 0.346 3.654 4 N -0.560 5.560 5 C 0.176 3.824 6 C -0.102 4.102 7 C -0.205 4.205 8 C -0.009 4.009 9 C -0.234 4.234 10 C 0.573 3.427 11 O -0.565 6.565 12 N -0.638 5.638 13 C 0.098 3.902 14 C -0.097 4.097 15 H 0.137 0.863 16 C -0.104 4.104 17 C 0.139 3.861 18 N -0.601 5.601 19 C -0.254 4.254 20 H 0.054 0.946 21 C -0.040 4.040 22 N -0.930 5.930 23 Si 0.949 3.051 24 H -0.305 1.305 25 H -0.286 1.286 26 H -0.264 1.264 27 C 0.181 3.819 28 C 0.105 3.895 29 H 0.094 0.906 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.112 0.888 36 H 0.192 0.808 37 H 0.180 0.820 38 H 0.126 0.874 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.036 0.964 42 H 0.030 0.970 43 H 0.047 0.953 44 H 0.243 0.757 45 H 0.045 0.955 46 H -0.005 1.005 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.068 26.550 -2.465 26.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.216 6.216 3 C 0.167 3.833 4 N -0.286 5.286 5 C 0.039 3.961 6 C -0.159 4.159 7 C -0.224 4.224 8 C -0.034 4.034 9 C -0.240 4.240 10 C 0.364 3.636 11 O -0.444 6.444 12 N -0.373 5.373 13 C -0.022 4.022 14 C -0.116 4.116 15 H 0.155 0.845 16 C -0.143 4.143 17 C 0.014 3.986 18 N -0.324 5.324 19 C -0.385 4.385 20 H 0.072 0.928 21 C -0.236 4.236 22 N -0.577 5.577 23 Si 0.779 3.221 24 H -0.233 1.233 25 H -0.212 1.212 26 H -0.189 1.189 27 C 0.055 3.945 28 C 0.000 4.000 29 H 0.112 0.888 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.091 0.909 35 H 0.131 0.869 36 H 0.209 0.791 37 H 0.197 0.803 38 H 0.144 0.856 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.055 0.945 42 H 0.048 0.952 43 H 0.066 0.934 44 H 0.052 0.948 45 H 0.063 0.937 46 H 0.013 0.987 Dipole moment (debyes) X Y Z Total from point charges -1.299 25.439 -2.618 25.606 hybrid contribution -0.763 -1.708 -0.081 1.873 sum -2.062 23.731 -2.699 23.973 Atomic orbital electron populations 1.23042 0.76352 1.03792 1.02728 1.86570 1.24029 1.24914 1.86050 1.20114 0.88807 0.85082 0.89313 1.67325 1.40496 0.98625 1.22127 1.22070 0.93951 0.91958 0.88156 1.20944 0.98732 0.91522 1.04722 1.22248 0.93001 1.01142 1.06025 1.22402 1.02890 0.88931 0.89134 1.20119 0.91146 0.95684 1.17051 1.17808 0.80669 0.88325 0.76838 1.90888 1.71399 1.31150 1.50950 1.49431 1.02909 1.14171 1.70810 1.23845 0.85391 0.91695 1.01316 1.22853 1.00476 0.94257 0.94038 0.84487 1.21704 1.00709 0.96800 0.95091 1.20973 0.92477 0.91712 0.93437 1.43672 1.35858 1.51630 1.01260 1.19316 1.13583 1.04406 1.01183 0.92814 1.25521 1.01441 0.97605 0.98983 1.70162 1.38836 1.26698 1.21980 0.85534 0.81130 0.77270 0.78199 1.23328 1.21214 1.18857 1.19784 0.99112 0.91441 0.84187 1.22719 0.84703 0.92725 0.99812 0.88816 0.91718 0.91238 0.88216 0.88355 0.90859 0.86920 0.79060 0.80269 0.85638 0.88037 0.87809 0.94503 0.95222 0.93438 0.94771 0.93661 0.98698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.13 10.38 113.37 1.18 2.30 16 2 O -0.31 -13.43 8.60 -66.52 -0.57 -14.00 16 3 C 0.35 12.97 7.50 85.13 0.64 13.61 16 4 N -0.56 -16.58 9.11 -296.06 -2.70 -19.28 16 5 C 0.18 3.58 6.78 42.58 0.29 3.87 16 6 C -0.10 -1.09 10.16 71.23 0.72 -0.37 16 7 C -0.20 -3.33 9.71 22.32 0.22 -3.11 16 8 C -0.01 -0.19 9.25 22.72 0.21 0.02 16 9 C -0.23 -8.32 5.90 -19.91 -0.12 -8.44 16 10 C 0.57 25.67 7.96 86.69 0.69 26.36 16 11 O -0.56 -33.04 14.39 16.71 0.24 -32.80 16 12 N -0.64 -23.23 3.30 -869.12 -2.87 -26.11 16 13 C 0.10 2.03 5.60 81.22 0.45 2.48 16 14 C -0.10 -2.52 4.57 -10.48 -0.05 -2.56 16 15 H 0.14 2.46 8.14 -2.39 -0.02 2.44 16 16 C -0.10 -3.16 5.71 30.66 0.18 -2.98 16 17 C 0.14 5.78 6.46 86.42 0.56 6.34 16 18 N -0.60 -32.72 3.02 -707.24 -2.14 -34.86 16 19 C -0.25 -15.80 9.51 84.04 0.80 -15.00 16 20 H 0.05 3.32 7.84 -2.91 -0.02 3.29 16 21 C -0.04 -2.56 4.91 84.86 0.42 -2.14 16 22 N -0.93 -61.78 11.05 21.65 0.24 -61.54 16 23 Si 0.95 52.56 29.58 68.60 2.03 54.59 16 24 H -0.30 -17.77 7.11 99.48 0.71 -17.06 16 25 H -0.29 -15.32 7.11 99.48 0.71 -14.61 16 26 H -0.26 -13.64 7.11 99.48 0.71 -12.93 16 27 C 0.18 9.68 4.56 85.91 0.39 10.07 16 28 C 0.10 3.98 4.03 38.71 0.16 4.13 16 29 H 0.09 3.12 8.14 -2.39 -0.02 3.11 16 30 H 0.06 1.86 8.10 -2.39 -0.02 1.85 16 31 H 0.07 1.93 8.11 -2.39 -0.02 1.91 16 32 H 0.10 2.96 8.14 -2.38 -0.02 2.94 16 33 H 0.10 0.80 8.14 -2.38 -0.02 0.78 16 34 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.11 0.49 8.07 -2.39 -0.02 0.48 16 36 H 0.19 1.14 8.06 -2.91 -0.02 1.12 16 37 H 0.18 2.76 4.33 -2.91 -0.01 2.75 16 38 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.10 1.62 6.60 -2.39 -0.02 1.60 16 40 H 0.10 2.21 8.14 -2.39 -0.02 2.20 16 41 H 0.04 1.30 7.69 -2.39 -0.02 1.28 16 42 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.05 1.99 7.88 -2.39 -0.02 1.98 16 44 H 0.24 15.83 8.31 -92.71 -0.77 15.06 16 45 H 0.04 2.94 5.01 -2.38 -0.01 2.93 16 46 H 0.00 -0.27 7.99 -2.39 -0.02 -0.29 16 Total: -1.00 -96.98 366.51 1.95 -95.03 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: 0.99 Total: 4.39 kcal Atomic # 6 Polarization: 27.84 SS G_CDS: 6.73 Total: 34.57 kcal Atomic # 7 Polarization: -134.31 SS G_CDS: -7.47 Total: -141.78 kcal Atomic # 8 Polarization: -46.47 SS G_CDS: -0.33 Total: -46.80 kcal Atomic # 14 Polarization: 52.56 SS G_CDS: 2.03 Total: 54.59 kcal Total: -96.98 1.95 -95.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084705417.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.222 kcal (2) G-P(sol) polarization free energy of solvation -96.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds