Wall clock time and date at job start Tue Mar 31 2020 17:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37998 * 120.81975 * 2 1 4 4 C 1.39126 * 119.26076 * 180.02562 * 3 2 1 5 5 O 1.35501 * 119.52088 * 179.97438 * 4 3 2 6 6 N 1.32430 * 120.95380 * 0.02562 * 4 3 2 7 7 C 1.31645 * 121.79876 * 359.70039 * 6 4 3 8 8 C 1.50701 * 119.68691 * 180.29272 * 7 6 4 9 9 C 1.39559 * 120.62170 * 0.58508 * 7 6 4 10 10 C 1.47616 * 120.49828 * 179.70232 * 9 7 6 11 11 O 1.21583 * 120.00010 * 269.72890 * 10 9 7 12 12 N 1.34775 * 120.00092 * 89.72394 * 10 9 7 13 13 C 1.47805 * 135.00953 * 359.95455 * 12 10 9 14 14 C 1.54656 * 85.79205 * 153.84192 * 13 12 10 15 15 H 1.09000 * 115.01535 * 139.91527 * 14 13 12 16 16 C 1.53019 * 110.83297 * 270.22988 * 14 13 12 17 17 C 1.53099 * 109.44018 * 143.89159 * 16 14 13 18 18 N 1.46618 * 108.01184 * 301.02033 * 17 16 14 19 19 C 1.36936 * 119.89021 * 237.30881 * 18 17 16 20 20 H 1.07997 * 120.00148 * 25.30180 * 19 18 17 21 21 C 1.38814 * 119.99866 * 205.29340 * 19 18 17 22 22 N 1.31621 * 119.99821 * 13.63775 * 21 19 18 23 23 Si 1.86796 * 120.00084 * 193.62708 * 21 19 18 24 24 H 1.48499 * 109.47189 * 60.00425 * 23 21 19 25 25 H 1.48499 * 109.47276 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47505 * 300.00318 * 23 21 19 27 27 C 1.45060 * 120.50086 * 56.72247 * 18 17 16 28 28 C 1.46817 * 135.01412 * 180.02562 * 12 10 9 29 29 H 1.08996 * 111.56331 * 94.45035 * 28 12 10 30 30 H 1.08992 * 109.47291 * 269.97812 * 1 2 3 31 31 H 1.09001 * 109.46894 * 29.98190 * 1 2 3 32 32 H 1.08997 * 109.47169 * 149.97550 * 1 2 3 33 33 H 1.07993 * 120.36887 * 359.97438 * 3 2 1 34 34 H 0.96695 * 114.00160 * 90.00023 * 5 4 3 35 35 H 1.08996 * 109.46960 * 270.28976 * 8 7 6 36 36 H 1.08996 * 109.47190 * 30.29513 * 8 7 6 37 37 H 1.09001 * 109.46884 * 150.29296 * 8 7 6 38 38 H 1.08998 * 113.82635 * 39.62382 * 13 12 10 39 39 H 1.09003 * 113.82656 * 268.05654 * 13 12 10 40 40 H 1.08993 * 109.47423 * 23.89927 * 16 14 13 41 41 H 1.08997 * 109.47609 * 263.88613 * 16 14 13 42 42 H 1.09000 * 109.75686 * 60.65103 * 17 16 14 43 43 H 1.09006 * 109.75149 * 181.39115 * 17 16 14 44 44 H 0.97003 * 119.99572 * 180.02562 * 22 21 19 45 45 H 1.09001 * 109.47858 * 200.15441 * 27 18 17 46 46 H 1.08996 * 107.57266 * 82.35758 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6048 1.1472 -0.0005 5 8 4.3043 2.3077 -0.0011 6 7 4.2548 -0.0066 -0.0016 7 6 3.6204 -1.1601 0.0037 8 6 4.4080 -2.4449 0.0090 9 6 2.2256 -1.2044 -0.0016 10 6 1.5171 -2.4994 -0.0022 11 8 1.2250 -3.0320 -1.0554 12 7 1.1941 -3.0914 1.1647 13 6 1.3789 -2.7574 2.5926 14 6 0.1260 -3.6294 2.8412 15 1 0.1728 -4.2614 3.7281 16 6 -1.1484 -2.7862 2.7616 17 6 -2.2681 -3.6139 2.1249 18 7 -1.8245 -4.0253 0.7894 19 6 -2.5689 -3.6907 -0.3101 20 1 -3.2153 -2.8260 -0.2819 21 6 -2.4926 -4.4629 -1.4612 22 7 -1.9273 -5.6509 -1.4203 23 14 -3.1924 -3.8162 -3.0678 24 1 -2.5018 -2.5542 -3.4361 25 1 -2.9866 -4.8243 -4.1387 26 1 -4.6455 -3.5563 -2.9059 27 6 -0.5940 -4.7748 0.6207 28 6 0.5141 -4.3360 1.5444 29 1 1.2251 -5.1424 1.7235 30 1 -0.3633 -0.0004 1.0276 31 1 -0.3633 0.8902 -0.5136 32 1 -0.3633 -0.8897 -0.5142 33 1 1.6936 2.1314 -0.0004 34 1 4.5077 2.6448 0.8821 35 1 4.6018 -2.7564 -1.0174 36 1 5.3546 -2.2887 0.5263 37 1 3.8371 -3.2189 0.5219 38 1 1.2326 -1.7016 2.8203 39 1 2.2922 -3.1655 3.0257 40 1 -0.9609 -1.9007 2.1545 41 1 -1.4465 -2.4825 3.7650 42 1 -2.4672 -4.4952 2.7347 43 1 -3.1718 -3.0099 2.0431 44 1 -1.8737 -6.1903 -2.2248 45 1 -0.2489 -4.6801 -0.4089 46 1 -0.8179 -5.8234 0.8167 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084845035.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:05 Heat of formation + Delta-G solvation = 26.314285 kcal Electronic energy + Delta-G solvation = -30347.070100 eV Core-core repulsion = 26432.213491 eV Total energy + Delta-G solvation = -3914.856609 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.02885 -40.14315 -37.99558 -36.90941 -35.24447 -34.29800 -32.25126 -31.83252 -30.19707 -29.10410 -28.03487 -27.52962 -26.90064 -23.96067 -23.82764 -22.67150 -21.34431 -21.11770 -20.06496 -18.54848 -17.94588 -17.42329 -17.14295 -16.19338 -15.86714 -15.65144 -15.49828 -14.34094 -14.21555 -14.13910 -13.77393 -13.60128 -13.40765 -13.30753 -13.21917 -13.00289 -12.90025 -12.48030 -12.37223 -12.35603 -12.06322 -11.98482 -11.89481 -11.64163 -11.52099 -11.15104 -10.71466 -10.66803 -10.49628 -10.22649 -9.99734 -9.84442 -9.82207 -9.59184 -9.50063 -8.99091 -8.82089 -8.31900 -8.18063 -6.60490 -5.67534 -3.10878 0.73827 1.08200 3.02145 3.07879 3.37392 3.45510 3.52125 3.54019 3.56494 4.38602 4.49477 4.57590 4.58296 4.67375 4.96326 5.11702 5.17044 5.30874 5.36798 5.41543 5.43483 5.49528 5.52888 5.54600 5.58651 5.65624 5.69700 5.85162 5.88279 5.89713 6.03140 6.08798 6.17753 6.26540 6.30409 6.33694 6.43263 6.49720 6.55556 6.74333 6.96216 7.28419 7.49312 7.74946 7.76919 7.92325 8.19496 8.55513 8.64140 9.34464 9.98183 10.45260 11.40188 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.013075 B = 0.004776 C = 0.004272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.036760 B = 5860.733114 C = 6553.363862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.015 3.985 3 C -0.197 4.197 4 C 0.322 3.678 5 O -0.481 6.481 6 N -0.509 5.509 7 C 0.187 3.813 8 C -0.108 4.108 9 C -0.174 4.174 10 C 0.590 3.410 11 O -0.505 6.505 12 N -0.623 5.623 13 C 0.096 3.904 14 C -0.109 4.109 15 H 0.088 0.912 16 C -0.118 4.118 17 C 0.148 3.852 18 N -0.584 5.584 19 C -0.257 4.257 20 H 0.062 0.938 21 C 0.014 3.986 22 N -0.901 5.901 23 Si 0.900 3.100 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.285 1.285 27 C 0.166 3.834 28 C 0.124 3.876 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.144 0.856 34 H 0.399 0.601 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.060 0.940 41 H 0.054 0.946 42 H 0.020 0.980 43 H 0.056 0.944 44 H 0.253 0.747 45 H 0.106 0.894 46 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.953 10.443 11.684 18.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.007 3.993 3 C -0.218 4.218 4 C 0.143 3.857 5 O -0.288 6.288 6 N -0.229 5.229 7 C 0.049 3.951 8 C -0.165 4.165 9 C -0.179 4.179 10 C 0.377 3.623 11 O -0.379 6.379 12 N -0.359 5.359 13 C -0.028 4.028 14 C -0.128 4.128 15 H 0.106 0.894 16 C -0.158 4.158 17 C 0.022 3.978 18 N -0.306 5.306 19 C -0.386 4.386 20 H 0.079 0.921 21 C -0.185 4.185 22 N -0.546 5.546 23 Si 0.730 3.270 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.211 1.211 27 C 0.040 3.960 28 C 0.021 3.979 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.110 0.890 33 H 0.162 0.838 34 H 0.257 0.743 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.038 0.962 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.124 0.876 46 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 10.724 10.122 10.133 17.892 hybrid contribution -0.864 0.638 -0.413 1.150 sum 9.860 10.760 9.720 17.535 Atomic orbital electron populations 1.20987 0.88755 1.04952 1.03541 1.20323 0.97347 0.90741 0.90906 1.21867 0.93639 0.99333 1.06971 1.19182 0.87006 0.84941 0.94529 1.84740 1.76068 1.34205 1.33826 1.66933 1.41861 0.97809 1.16305 1.20988 0.89263 0.92996 0.91887 1.20811 0.99995 0.91677 1.04030 1.20882 0.94641 0.94932 1.07435 1.17279 0.78500 0.83628 0.82914 1.90916 1.52571 1.64401 1.29993 1.49875 1.57678 1.24343 1.04050 1.23553 0.98264 1.00218 0.80722 1.22855 0.94705 0.97422 0.97821 0.89424 1.21890 0.95525 0.98722 0.99643 1.20734 0.94112 0.95576 0.87411 1.43296 1.21106 1.65378 1.00826 1.19012 1.21807 1.06665 0.91125 0.92063 1.24933 0.99754 0.94950 0.98894 1.69988 1.47850 1.09134 1.27580 0.86423 0.78428 0.78249 0.83930 1.21060 1.21643 1.21129 1.20032 0.83206 0.93398 0.99393 1.22810 0.95199 0.86507 0.93403 0.90705 0.89919 0.90616 0.89005 0.83847 0.74329 0.89533 0.89949 0.90381 0.90982 0.90404 0.92089 0.92732 0.96185 0.92561 0.93694 0.87638 0.95213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 9.69 36.01 0.35 -1.50 16 2 C 0.01 0.22 5.95 -103.96 -0.62 -0.40 16 3 C -0.20 -2.50 9.72 -39.34 -0.38 -2.88 16 4 C 0.32 4.28 7.74 -16.96 -0.13 4.15 16 5 O -0.48 -5.20 13.55 -18.20 -0.25 -5.45 16 6 N -0.51 -7.59 10.29 -9.20 -0.09 -7.69 16 7 C 0.19 2.85 6.82 -82.18 -0.56 2.29 16 8 C -0.11 -1.41 9.78 36.01 0.35 -1.05 16 9 C -0.17 -2.87 5.42 -104.82 -0.57 -3.44 16 10 C 0.59 11.42 4.48 -12.43 -0.06 11.37 16 11 O -0.50 -12.44 16.17 5.29 0.09 -12.35 16 12 N -0.62 -10.64 3.33 -175.17 -0.58 -11.22 16 13 C 0.10 1.21 7.95 -3.00 -0.02 1.18 16 14 C -0.11 -1.54 4.39 -89.96 -0.40 -1.93 16 15 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 16 C -0.12 -1.81 5.66 -26.67 -0.15 -1.96 16 17 C 0.15 2.88 6.48 -3.93 -0.03 2.86 16 18 N -0.58 -14.17 3.01 -175.55 -0.53 -14.70 16 19 C -0.26 -7.04 9.53 -15.06 -0.14 -7.18 16 20 H 0.06 1.65 7.84 -52.49 -0.41 1.24 16 21 C 0.01 0.39 4.96 -17.43 -0.09 0.31 16 22 N -0.90 -26.79 10.90 55.49 0.60 -26.19 16 23 Si 0.90 22.89 29.57 -169.99 -5.03 17.86 16 24 H -0.28 -7.32 7.11 56.52 0.40 -6.92 16 25 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 26 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 27 C 0.17 3.95 4.52 -5.93 -0.03 3.93 16 28 C 0.12 2.24 4.27 -69.57 -0.30 1.94 16 29 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.08 1.08 7.72 -51.93 -0.40 0.68 16 31 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 32 H 0.09 1.76 7.18 -51.93 -0.37 1.38 16 33 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 34 H 0.40 2.10 9.06 45.56 0.41 2.51 16 35 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.08 1.03 7.06 -51.93 -0.37 0.66 16 38 H 0.07 0.84 7.97 -51.93 -0.41 0.43 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 1.00 7.27 -51.93 -0.38 0.63 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 1.08 7.89 -51.93 -0.41 0.67 16 44 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 45 H 0.11 2.98 4.83 -51.93 -0.25 2.73 16 46 H 0.03 0.78 7.92 -51.93 -0.41 0.37 16 LS Contribution 371.71 15.07 5.60 5.60 Total: -1.00 -35.08 371.71 -8.89 -43.97 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -5.94 Total: 2.50 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: -2.76 Total: 7.67 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: -0.60 Total: -59.80 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -0.16 Total: -17.80 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.03 Total: 17.86 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.08 -8.89 -43.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084845035.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.283 kcal (2) G-P(sol) polarization free energy of solvation -35.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds