Wall clock time and date at job start Tue Mar 31 2020 17:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37998 * 120.81975 * 2 1 4 4 C 1.39126 * 119.26076 * 180.02562 * 3 2 1 5 5 O 1.35501 * 119.52088 * 179.97438 * 4 3 2 6 6 N 1.32430 * 120.95380 * 0.02562 * 4 3 2 7 7 C 1.31645 * 121.79876 * 359.70039 * 6 4 3 8 8 C 1.50701 * 119.68691 * 180.29272 * 7 6 4 9 9 C 1.39559 * 120.62170 * 0.58508 * 7 6 4 10 10 C 1.47616 * 120.49828 * 179.70232 * 9 7 6 11 11 O 1.21583 * 120.00010 * 269.72890 * 10 9 7 12 12 N 1.34775 * 120.00092 * 89.72394 * 10 9 7 13 13 C 1.47805 * 135.00953 * 359.95455 * 12 10 9 14 14 C 1.54656 * 85.79205 * 153.84192 * 13 12 10 15 15 H 1.09000 * 115.01535 * 139.91527 * 14 13 12 16 16 C 1.53019 * 110.83297 * 270.22988 * 14 13 12 17 17 C 1.53099 * 109.44018 * 143.89159 * 16 14 13 18 18 N 1.46618 * 108.01184 * 301.02033 * 17 16 14 19 19 C 1.36936 * 119.89021 * 237.30881 * 18 17 16 20 20 H 1.07997 * 120.00148 * 25.30180 * 19 18 17 21 21 C 1.38814 * 119.99866 * 205.29340 * 19 18 17 22 22 N 1.31621 * 119.99821 * 13.63775 * 21 19 18 23 23 Si 1.86796 * 120.00084 * 193.62708 * 21 19 18 24 24 H 1.48499 * 109.47189 * 60.00425 * 23 21 19 25 25 H 1.48499 * 109.47276 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47505 * 300.00318 * 23 21 19 27 27 C 1.45060 * 120.50086 * 56.72247 * 18 17 16 28 28 C 1.46817 * 135.01412 * 180.02562 * 12 10 9 29 29 H 1.08996 * 111.56331 * 94.45035 * 28 12 10 30 30 H 1.08992 * 109.47291 * 269.97812 * 1 2 3 31 31 H 1.09001 * 109.46894 * 29.98190 * 1 2 3 32 32 H 1.08997 * 109.47169 * 149.97550 * 1 2 3 33 33 H 1.07993 * 120.36887 * 359.97438 * 3 2 1 34 34 H 0.96695 * 114.00160 * 90.00023 * 5 4 3 35 35 H 1.08996 * 109.46960 * 270.28976 * 8 7 6 36 36 H 1.08996 * 109.47190 * 30.29513 * 8 7 6 37 37 H 1.09001 * 109.46884 * 150.29296 * 8 7 6 38 38 H 1.08998 * 113.82635 * 39.62382 * 13 12 10 39 39 H 1.09003 * 113.82656 * 268.05654 * 13 12 10 40 40 H 1.08993 * 109.47423 * 23.89927 * 16 14 13 41 41 H 1.08997 * 109.47609 * 263.88613 * 16 14 13 42 42 H 1.09000 * 109.75686 * 60.65103 * 17 16 14 43 43 H 1.09006 * 109.75149 * 181.39115 * 17 16 14 44 44 H 0.97003 * 119.99572 * 180.02562 * 22 21 19 45 45 H 1.09001 * 109.47858 * 200.15441 * 27 18 17 46 46 H 1.08996 * 107.57266 * 82.35758 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6048 1.1472 -0.0005 5 8 4.3043 2.3077 -0.0011 6 7 4.2548 -0.0066 -0.0016 7 6 3.6204 -1.1601 0.0037 8 6 4.4080 -2.4449 0.0090 9 6 2.2256 -1.2044 -0.0016 10 6 1.5171 -2.4994 -0.0022 11 8 1.2250 -3.0320 -1.0554 12 7 1.1941 -3.0914 1.1647 13 6 1.3789 -2.7574 2.5926 14 6 0.1260 -3.6294 2.8412 15 1 0.1728 -4.2614 3.7281 16 6 -1.1484 -2.7862 2.7616 17 6 -2.2681 -3.6139 2.1249 18 7 -1.8245 -4.0253 0.7894 19 6 -2.5689 -3.6907 -0.3101 20 1 -3.2153 -2.8260 -0.2819 21 6 -2.4926 -4.4629 -1.4612 22 7 -1.9273 -5.6509 -1.4203 23 14 -3.1924 -3.8162 -3.0678 24 1 -2.5018 -2.5542 -3.4361 25 1 -2.9866 -4.8243 -4.1387 26 1 -4.6455 -3.5563 -2.9059 27 6 -0.5940 -4.7748 0.6207 28 6 0.5141 -4.3360 1.5444 29 1 1.2251 -5.1424 1.7235 30 1 -0.3633 -0.0004 1.0276 31 1 -0.3633 0.8902 -0.5136 32 1 -0.3633 -0.8897 -0.5142 33 1 1.6936 2.1314 -0.0004 34 1 4.5077 2.6448 0.8821 35 1 4.6018 -2.7564 -1.0174 36 1 5.3546 -2.2887 0.5263 37 1 3.8371 -3.2189 0.5219 38 1 1.2326 -1.7016 2.8203 39 1 2.2922 -3.1655 3.0257 40 1 -0.9609 -1.9007 2.1545 41 1 -1.4465 -2.4825 3.7650 42 1 -2.4672 -4.4952 2.7347 43 1 -3.1718 -3.0099 2.0431 44 1 -1.8737 -6.1903 -2.2248 45 1 -0.2489 -4.6801 -0.4089 46 1 -0.8179 -5.8234 0.8167 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084845035.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:04 Heat of formation + Delta-G solvation = -1.431520 kcal Electronic energy + Delta-G solvation = -30348.273249 eV Core-core repulsion = 26432.213491 eV Total energy + Delta-G solvation = -3916.059758 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.24340 -41.35878 -39.28848 -38.05131 -37.02990 -35.40014 -33.98555 -33.01632 -31.92382 -30.55252 -29.11978 -28.86791 -28.34163 -25.69394 -25.14088 -24.00927 -22.63109 -22.42079 -21.41605 -19.64324 -19.37994 -18.86403 -18.30296 -17.74040 -17.25730 -17.13227 -16.70602 -16.15783 -15.66395 -15.27995 -15.26327 -14.95447 -14.78342 -14.59830 -14.45346 -14.39721 -14.17732 -13.89166 -13.83168 -13.49088 -13.37591 -13.16935 -13.14664 -12.99671 -12.77082 -12.66617 -12.64002 -12.38836 -12.23525 -11.96315 -11.73568 -11.48331 -11.29055 -10.83762 -10.65074 -10.57481 -10.29513 -9.91098 -9.56445 -8.63108 -7.82572 -5.26388 -0.33323 -0.00249 1.35659 1.42954 1.45068 1.61590 1.85790 2.33333 2.49137 2.52584 3.31111 3.33777 3.35607 3.47028 3.47751 3.76318 3.92337 4.02326 4.11315 4.19898 4.24317 4.35875 4.44288 4.45570 4.51625 4.54703 4.56272 4.60512 4.72689 4.75726 4.82424 4.84158 4.91004 4.95898 5.04266 5.10521 5.12736 5.18115 5.32808 5.37787 5.47606 5.60019 5.73629 5.87657 6.42724 6.53944 6.75973 6.85743 7.21957 7.22832 8.00655 8.38166 9.21238 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.013075 B = 0.004776 C = 0.004272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.036760 B = 5860.733114 C = 6553.363862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.007 3.993 3 C -0.185 4.185 4 C 0.330 3.670 5 O -0.483 6.483 6 N -0.522 5.522 7 C 0.184 3.816 8 C -0.105 4.105 9 C -0.196 4.196 10 C 0.591 3.409 11 O -0.578 6.578 12 N -0.625 5.625 13 C 0.109 3.891 14 C -0.096 4.096 15 H 0.127 0.873 16 C -0.108 4.108 17 C 0.140 3.860 18 N -0.599 5.599 19 C -0.252 4.252 20 H 0.063 0.937 21 C -0.044 4.044 22 N -0.931 5.931 23 Si 0.949 3.051 24 H -0.293 1.293 25 H -0.298 1.298 26 H -0.266 1.266 27 C 0.181 3.819 28 C 0.110 3.890 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.037 0.963 33 H 0.176 0.824 34 H 0.425 0.575 35 H 0.077 0.923 36 H 0.106 0.894 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.114 0.886 40 H 0.048 0.952 41 H 0.099 0.901 42 H 0.026 0.974 43 H 0.053 0.947 44 H 0.242 0.758 45 H 0.054 0.946 46 H -0.008 1.008 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.150 13.555 15.020 23.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.001 4.001 3 C -0.205 4.205 4 C 0.151 3.849 5 O -0.294 6.294 6 N -0.243 5.243 7 C 0.046 3.954 8 C -0.162 4.162 9 C -0.201 4.201 10 C 0.380 3.620 11 O -0.457 6.457 12 N -0.359 5.359 13 C -0.012 4.012 14 C -0.115 4.115 15 H 0.145 0.855 16 C -0.147 4.147 17 C 0.015 3.985 18 N -0.323 5.323 19 C -0.382 4.382 20 H 0.080 0.920 21 C -0.239 4.239 22 N -0.578 5.578 23 Si 0.779 3.221 24 H -0.220 1.220 25 H -0.224 1.224 26 H -0.191 1.191 27 C 0.055 3.945 28 C 0.006 3.994 29 H 0.110 0.890 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.056 0.944 33 H 0.194 0.806 34 H 0.288 0.712 35 H 0.096 0.904 36 H 0.124 0.876 37 H 0.091 0.909 38 H 0.109 0.891 39 H 0.132 0.868 40 H 0.066 0.934 41 H 0.118 0.882 42 H 0.044 0.956 43 H 0.072 0.928 44 H 0.052 0.948 45 H 0.072 0.928 46 H 0.010 0.990 Dipole moment (debyes) X Y Z Total from point charges 11.919 13.284 13.583 22.428 hybrid contribution -1.227 -0.235 -1.375 1.858 sum 10.693 13.049 12.208 20.824 Atomic orbital electron populations 1.20880 0.88998 1.03309 1.04121 1.20406 0.97284 0.91082 0.91308 1.22070 0.93431 0.99596 1.05442 1.19380 0.87454 0.85182 0.92901 1.84695 1.75645 1.32901 1.36151 1.67009 1.42069 0.98150 1.17039 1.21127 0.88807 0.93814 0.91627 1.20816 1.00808 0.90847 1.03746 1.20730 0.95261 0.93958 1.10153 1.17708 0.77636 0.84237 0.82443 1.90875 1.55666 1.66499 1.32709 1.50007 1.56454 1.23773 1.05644 1.23796 0.98877 1.01381 0.77104 1.22870 0.94896 0.97218 0.96523 0.85506 1.21780 0.94261 0.97383 1.01256 1.20978 0.95922 0.96351 0.85236 1.43530 1.21337 1.65258 1.02138 1.19326 1.20825 1.05818 0.92262 0.91954 1.25583 1.01255 0.95442 1.01616 1.70164 1.50030 1.10318 1.27292 0.85611 0.78719 0.76920 0.80883 1.21971 1.22394 1.19118 1.19586 0.84885 0.91762 0.98291 1.22767 0.93996 0.88144 0.94482 0.88952 0.88257 0.88334 0.94356 0.80614 0.71240 0.90435 0.87575 0.90906 0.89053 0.86771 0.93371 0.88222 0.95565 0.92802 0.94848 0.92786 0.99048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.33 9.69 71.24 0.69 -2.64 16 2 C 0.01 0.20 5.95 -19.43 -0.12 0.08 16 3 C -0.18 -4.07 9.72 22.43 0.22 -3.86 16 4 C 0.33 7.70 7.74 84.82 0.66 8.36 16 5 O -0.48 -8.53 13.55 -88.03 -1.19 -9.72 16 6 N -0.52 -14.38 10.29 -295.89 -3.04 -17.42 16 7 C 0.18 5.41 6.82 42.91 0.29 5.70 16 8 C -0.11 -2.68 9.78 71.24 0.70 -1.98 16 9 C -0.20 -6.40 5.42 -20.00 -0.11 -6.51 16 10 C 0.59 23.60 4.48 86.72 0.39 23.99 16 11 O -0.58 -30.75 16.17 -3.98 -0.06 -30.82 16 12 N -0.62 -20.97 3.33 -826.38 -2.75 -23.72 16 13 C 0.11 2.32 7.95 86.34 0.69 3.00 16 14 C -0.10 -2.37 4.39 -10.30 -0.05 -2.41 16 15 H 0.13 2.27 8.14 -2.39 -0.02 2.25 16 16 C -0.11 -2.94 5.66 30.63 0.17 -2.77 16 17 C 0.14 5.31 6.48 86.39 0.56 5.87 16 18 N -0.60 -30.05 3.01 -709.33 -2.14 -32.19 16 19 C -0.25 -14.38 9.53 84.03 0.80 -13.58 16 20 H 0.06 3.46 7.84 -2.91 -0.02 3.44 16 21 C -0.04 -2.62 4.96 84.86 0.42 -2.20 16 22 N -0.93 -59.18 10.90 21.65 0.24 -58.95 16 23 Si 0.95 49.34 29.57 68.60 2.03 51.37 16 24 H -0.29 -15.43 7.11 99.48 0.71 -14.72 16 25 H -0.30 -15.65 7.11 99.48 0.71 -14.95 16 26 H -0.27 -12.83 7.11 99.48 0.71 -12.13 16 27 C 0.18 9.12 4.52 85.93 0.39 9.51 16 28 C 0.11 3.93 4.27 43.75 0.19 4.12 16 29 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 30 H 0.10 2.41 7.72 -2.39 -0.02 2.39 16 31 H 0.10 2.27 8.10 -2.39 -0.02 2.25 16 32 H 0.04 1.52 7.18 -2.39 -0.02 1.50 16 33 H 0.18 2.67 8.06 -2.91 -0.02 2.65 16 34 H 0.43 2.57 9.06 -74.06 -0.67 1.90 16 35 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.07 1.90 7.06 -2.39 -0.02 1.88 16 38 H 0.09 1.67 7.97 -2.39 -0.02 1.65 16 39 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.05 1.45 7.27 -2.39 -0.02 1.44 16 41 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.05 2.03 7.89 -2.38 -0.02 2.01 16 44 H 0.24 15.26 8.31 -92.71 -0.77 14.49 16 45 H 0.05 3.30 4.83 -2.39 -0.01 3.29 16 46 H -0.01 -0.46 7.92 -2.39 -0.02 -0.48 16 Total: -1.00 -85.55 371.71 -0.69 -86.24 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: 0.34 Total: 10.51 kcal Atomic # 6 Polarization: 18.80 SS G_CDS: 5.89 Total: 24.69 kcal Atomic # 7 Polarization: -124.58 SS G_CDS: -7.70 Total: -132.27 kcal Atomic # 8 Polarization: -39.29 SS G_CDS: -1.26 Total: -40.54 kcal Atomic # 14 Polarization: 49.34 SS G_CDS: 2.03 Total: 51.37 kcal Total: -85.55 -0.69 -86.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084845035.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.809 kcal (2) G-P(sol) polarization free energy of solvation -85.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds