Wall clock time and date at job start Tue Mar 31 2020 16:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38357 * 119.40747 * 2 1 4 4 C 1.38344 * 119.46023 * 179.97438 * 3 2 1 5 5 C 1.39990 * 118.34680 * 0.02562 * 4 3 2 6 6 C 1.47521 * 120.59653 * 180.02562 * 5 4 3 7 7 O 1.21583 * 120.00427 * 135.42391 * 6 5 4 8 8 N 1.34776 * 119.99881 * 315.41590 * 6 5 4 9 9 C 1.47762 * 125.82286 * 184.69548 * 8 6 5 10 10 C 1.56195 * 104.00658 * 154.06386 * 9 8 6 11 11 H 1.08997 * 113.91411 * 161.26083 * 10 9 8 12 12 C 1.52877 * 106.67781 * 286.46816 * 10 9 8 13 13 C 1.51601 * 111.55733 * 168.35422 * 12 10 9 14 14 N 1.44325 * 113.11255 * 320.91137 * 13 12 10 15 15 C 1.36938 * 116.35423 * 187.26101 * 14 13 12 16 16 H 1.08004 * 120.00209 * 148.39535 * 15 14 13 17 17 C 1.38810 * 119.99974 * 328.40384 * 15 14 13 18 18 N 1.31616 * 119.99980 * 337.25402 * 17 15 14 19 19 Si 1.86807 * 120.00290 * 157.26108 * 17 15 14 20 20 H 1.48497 * 109.47097 * 59.99192 * 19 17 15 21 21 H 1.48496 * 109.47183 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46735 * 299.99506 * 19 17 15 23 23 C 1.43989 * 127.29115 * 7.28063 * 14 13 12 24 24 C 1.49948 * 116.09807 * 2.48281 * 23 14 13 25 25 H 1.09000 * 108.82321 * 141.04574 * 24 23 14 26 26 C 1.47623 * 125.82007 * 5.01017 * 8 6 5 27 27 C 1.40282 * 118.80454 * 359.97438 * 5 4 3 28 28 O 1.35429 * 119.79554 * 180.02562 * 27 5 4 29 29 N 1.31881 * 119.41032 * 179.97438 * 2 1 3 30 30 H 1.08996 * 109.47224 * 270.02134 * 1 2 3 31 31 H 1.08999 * 109.46763 * 30.02274 * 1 2 3 32 32 H 1.08995 * 109.46973 * 150.02025 * 1 2 3 33 33 H 1.08001 * 120.27450 * 0.02562 * 3 2 1 34 34 H 1.07992 * 120.82340 * 179.97438 * 4 3 2 35 35 H 1.08999 * 110.50015 * 272.81330 * 9 8 6 36 36 H 1.08996 * 110.49600 * 35.48834 * 9 8 6 37 37 H 1.08994 * 109.06478 * 47.81252 * 12 10 9 38 38 H 1.09001 * 109.00032 * 288.84943 * 12 10 9 39 39 H 1.09002 * 108.75132 * 199.97668 * 13 12 10 40 40 H 1.08998 * 108.75813 * 81.85163 * 13 12 10 41 41 H 0.96995 * 120.00353 * 180.02562 * 18 17 15 42 42 H 1.09008 * 108.15650 * 240.76366 * 23 14 13 43 43 H 1.08998 * 107.99508 * 124.08433 * 23 14 13 44 44 H 1.09001 * 110.08089 * 299.82156 * 26 8 6 45 45 H 1.09002 * 110.08172 * 61.31601 * 26 8 6 46 46 H 0.96701 * 114.00267 * 270.00011 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5698 1.2066 0.0005 5 6 4.2356 -0.0249 0.0005 6 6 5.7097 -0.0814 0.0016 7 8 6.2879 -0.8545 0.7407 8 7 6.4156 0.7238 -0.8168 9 6 7.8827 0.7070 -0.9921 10 6 8.0980 1.2761 -2.4307 11 1 9.1097 1.6365 -2.6164 12 6 7.6702 0.1786 -3.4052 13 6 7.5633 0.7036 -4.8234 14 7 7.0017 2.0312 -4.8953 15 6 6.7319 2.5100 -6.1495 16 1 5.9060 3.1890 -6.3022 17 6 7.5198 2.1226 -7.2247 18 7 8.7448 1.6873 -7.0197 19 14 6.8414 2.2191 -8.9625 20 1 6.4755 3.6243 -9.2737 21 1 7.8730 1.7523 -9.9233 22 1 5.6365 1.3580 -9.0721 23 6 6.6937 2.9088 -3.7961 24 6 7.0452 2.4023 -2.4292 25 1 7.4319 3.2309 -1.8358 26 6 5.8555 1.7774 -1.6860 27 6 3.4758 -1.2041 0.0005 28 8 4.0992 -2.4063 0.0010 29 7 2.1546 -1.1488 0.0005 30 1 -0.3633 0.0004 1.0276 31 1 -0.3633 0.8898 -0.5142 32 1 -0.3633 -0.8901 -0.5135 33 1 1.6412 2.1376 0.0004 34 1 4.1223 2.1345 0.0001 35 1 8.3631 1.3454 -0.2507 36 1 8.2635 -0.3119 -0.9241 37 1 6.7011 -0.2135 -3.0968 38 1 8.4047 -0.6263 -3.3780 39 1 6.9355 0.0257 -5.4017 40 1 8.5588 0.7197 -5.2671 41 1 9.2955 1.4170 -7.7710 42 1 5.6238 3.1163 -3.8166 43 1 7.2227 3.8481 -3.9567 44 1 5.1559 1.3414 -2.3992 45 1 5.3519 2.5323 -1.0822 46 1 4.2806 -2.7557 -0.8822 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088120484.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:05 Heat of formation + Delta-G solvation = -1.460904 kcal Electronic energy + Delta-G solvation = -29277.559692 eV Core-core repulsion = 25361.498660 eV Total energy + Delta-G solvation = -3916.061032 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.15318 -40.01592 -38.22773 -37.36873 -35.64153 -33.61435 -32.38523 -31.85723 -31.53654 -30.38311 -28.49976 -27.65421 -25.64568 -24.06102 -23.51857 -22.90621 -21.97863 -21.54520 -19.94496 -18.76640 -17.97644 -17.36975 -17.18532 -16.93384 -16.11925 -15.80369 -15.51187 -14.95814 -14.87116 -14.30337 -14.21046 -13.91267 -13.84525 -13.65248 -13.29974 -13.01844 -12.89792 -12.72929 -12.64685 -12.45239 -12.30112 -12.23308 -11.84080 -11.81207 -11.29071 -11.16285 -10.80161 -10.65526 -10.34793 -10.27429 -10.26659 -10.09898 -9.82661 -9.72283 -9.61490 -9.56401 -9.05227 -8.61654 -8.50038 -6.61353 -5.67061 -3.37785 0.45303 0.86396 2.61078 2.87116 3.22636 3.34623 3.41116 3.42973 3.50638 4.17910 4.32184 4.40420 4.46441 4.67897 4.69580 4.81262 4.99570 5.06031 5.10131 5.24378 5.26606 5.28620 5.33915 5.49069 5.49545 5.61450 5.63007 5.68046 5.75956 5.78080 5.88878 5.92598 6.09997 6.16405 6.21499 6.26758 6.49265 6.54889 6.62005 6.73111 6.81271 7.23558 7.27693 7.47504 7.62446 7.75522 7.87878 8.10507 8.50746 9.24738 9.92892 10.24503 11.18154 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.013689 B = 0.003498 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.897013 B = 8003.257469 C = 8957.111014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.169 3.831 3 C -0.187 4.187 4 C -0.029 4.029 5 C -0.197 4.197 6 C 0.579 3.421 7 O -0.523 6.523 8 N -0.610 5.610 9 C 0.108 3.892 10 C -0.082 4.082 11 H 0.103 0.897 12 C -0.119 4.119 13 C 0.155 3.845 14 N -0.584 5.584 15 C -0.274 4.274 16 H 0.063 0.937 17 C 0.011 3.989 18 N -0.887 5.887 19 Si 0.899 3.101 20 H -0.281 1.281 21 H -0.290 1.290 22 H -0.284 1.284 23 C 0.176 3.824 24 C -0.099 4.099 25 H 0.074 0.926 26 C 0.106 3.894 27 C 0.367 3.633 28 O -0.466 6.466 29 N -0.506 5.506 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.146 0.854 34 H 0.148 0.852 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.046 0.954 38 H 0.056 0.944 39 H 0.015 0.985 40 H 0.080 0.920 41 H 0.254 0.746 42 H 0.013 0.987 43 H 0.025 0.975 44 H 0.074 0.926 45 H 0.066 0.934 46 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.722 0.073 13.498 17.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.031 3.969 3 C -0.207 4.207 4 C -0.055 4.055 5 C -0.203 4.203 6 C 0.366 3.634 7 O -0.399 6.399 8 N -0.344 5.344 9 C -0.014 4.014 10 C -0.101 4.101 11 H 0.121 0.879 12 C -0.157 4.157 13 C 0.030 3.970 14 N -0.309 5.309 15 C -0.403 4.403 16 H 0.080 0.920 17 C -0.189 4.189 18 N -0.530 5.530 19 Si 0.728 3.272 20 H -0.207 1.207 21 H -0.216 1.216 22 H -0.210 1.210 23 C 0.050 3.950 24 C -0.119 4.119 25 H 0.093 0.907 26 C -0.016 4.016 27 C 0.187 3.813 28 O -0.273 6.273 29 N -0.226 5.226 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.163 0.837 34 H 0.165 0.835 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.034 0.966 40 H 0.097 0.903 41 H 0.064 0.936 42 H 0.030 0.970 43 H 0.043 0.957 44 H 0.092 0.908 45 H 0.085 0.915 46 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -10.740 -1.249 14.511 18.096 hybrid contribution 0.196 0.727 -1.465 1.647 sum -10.545 -0.522 13.046 16.783 Atomic orbital electron populations 1.20818 0.88117 1.04063 1.03505 1.21253 0.97077 0.87187 0.91432 1.21911 0.94411 0.99633 1.04729 1.21867 0.94500 0.97241 0.91851 1.20960 0.94851 0.94589 1.09937 1.17450 0.85741 0.80151 0.80052 1.90823 1.70976 1.38555 1.39595 1.48619 1.08442 1.35381 1.41920 1.22732 0.79481 1.01978 0.97184 1.22293 0.99552 0.95697 0.92548 0.87850 1.21569 0.99964 0.96890 0.97313 1.20214 1.01392 0.84366 0.91023 1.42606 1.74546 1.11922 1.01782 1.19044 1.09204 1.27892 0.84195 0.91965 1.25069 0.94379 1.01085 0.98411 1.69950 1.06182 1.46649 1.30244 0.86430 0.78260 0.78057 0.84408 1.20746 1.21618 1.21039 1.19354 0.97258 0.93199 0.85187 1.21529 0.94502 0.97903 0.97917 0.90745 1.22377 0.97470 0.89249 0.92546 1.19014 0.86167 0.84718 0.91431 1.84762 1.76528 1.32313 1.33706 1.67092 1.09159 1.30489 1.15848 0.89892 0.90035 0.90057 0.83659 0.83465 0.91527 0.90288 0.93553 0.92481 0.96646 0.90303 0.93551 0.96956 0.95686 0.90761 0.91545 0.73770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 10.16 36.01 0.37 -0.37 16 2 C 0.17 1.75 6.78 -82.53 -0.56 1.19 16 3 C -0.19 -1.70 9.71 -39.50 -0.38 -2.08 16 4 C -0.03 -0.31 8.67 -38.89 -0.34 -0.65 16 5 C -0.20 -2.69 5.50 -104.69 -0.58 -3.26 16 6 C 0.58 9.00 7.23 -12.48 -0.09 8.91 16 7 O -0.52 -9.87 16.65 -7.48 -0.12 -9.99 16 8 N -0.61 -8.66 2.80 -170.64 -0.48 -9.14 16 9 C 0.11 1.51 6.23 -1.64 -0.01 1.50 16 10 C -0.08 -1.27 3.78 -88.36 -0.33 -1.60 16 11 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 12 C -0.12 -2.13 4.98 -27.50 -0.14 -2.27 16 13 C 0.15 3.53 5.25 -5.91 -0.03 3.50 16 14 N -0.58 -13.79 3.21 -179.59 -0.58 -14.36 16 15 C -0.27 -7.23 9.22 -15.06 -0.14 -7.37 16 16 H 0.06 1.63 7.93 -52.48 -0.42 1.21 16 17 C 0.01 0.30 4.97 -17.43 -0.09 0.21 16 18 N -0.89 -24.78 11.01 55.49 0.61 -24.17 16 19 Si 0.90 21.08 29.61 -169.99 -5.03 16.04 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 C 0.18 3.38 5.67 -6.89 -0.04 3.35 16 24 C -0.10 -1.49 2.68 -91.23 -0.24 -1.73 16 25 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 26 C 0.11 1.40 4.26 -3.13 -0.01 1.38 16 27 C 0.37 5.20 7.74 -16.61 -0.13 5.07 16 28 O -0.47 -6.54 12.49 -30.75 -0.38 -6.93 16 29 N -0.51 -6.72 10.28 -9.21 -0.09 -6.81 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.38 8.07 -51.93 -0.42 -0.04 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.15 1.29 5.72 -52.49 -0.30 0.99 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.08 1.15 7.98 -51.93 -0.41 0.74 16 37 H 0.05 0.82 6.77 -51.93 -0.35 0.47 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.02 0.38 8.12 -51.93 -0.42 -0.04 16 40 H 0.08 2.06 5.74 -51.93 -0.30 1.76 16 41 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 42 H 0.01 0.24 7.78 -51.92 -0.40 -0.17 16 43 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.07 1.09 7.83 -51.93 -0.41 0.68 16 45 H 0.07 0.70 5.90 -51.93 -0.31 0.40 16 46 H 0.40 3.91 9.06 45.56 0.41 4.32 16 LS Contribution 364.47 15.07 5.49 5.49 Total: -1.00 -33.39 364.47 -9.17 -42.56 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -5.84 Total: 1.52 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: -2.74 Total: 5.78 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: -0.54 Total: -54.47 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -0.51 Total: -16.92 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.39 -9.17 -42.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088120484.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.104 kcal (2) G-P(sol) polarization free energy of solvation -33.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds