Wall clock time and date at job start Tue Mar 31 2020 16:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38357 * 119.40747 * 2 1 4 4 C 1.38344 * 119.46023 * 179.97438 * 3 2 1 5 5 C 1.39990 * 118.34680 * 0.02562 * 4 3 2 6 6 C 1.47521 * 120.59653 * 180.02562 * 5 4 3 7 7 O 1.21583 * 120.00427 * 135.42391 * 6 5 4 8 8 N 1.34776 * 119.99881 * 315.41590 * 6 5 4 9 9 C 1.47762 * 125.82286 * 184.69548 * 8 6 5 10 10 C 1.56195 * 104.00658 * 154.06386 * 9 8 6 11 11 H 1.08997 * 113.91411 * 161.26083 * 10 9 8 12 12 C 1.52877 * 106.67781 * 286.46816 * 10 9 8 13 13 C 1.51601 * 111.55733 * 168.35422 * 12 10 9 14 14 N 1.44325 * 113.11255 * 320.91137 * 13 12 10 15 15 C 1.36938 * 116.35423 * 187.26101 * 14 13 12 16 16 H 1.08004 * 120.00209 * 148.39535 * 15 14 13 17 17 C 1.38810 * 119.99974 * 328.40384 * 15 14 13 18 18 N 1.31616 * 119.99980 * 337.25402 * 17 15 14 19 19 Si 1.86807 * 120.00290 * 157.26108 * 17 15 14 20 20 H 1.48497 * 109.47097 * 59.99192 * 19 17 15 21 21 H 1.48496 * 109.47183 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46735 * 299.99506 * 19 17 15 23 23 C 1.43989 * 127.29115 * 7.28063 * 14 13 12 24 24 C 1.49948 * 116.09807 * 2.48281 * 23 14 13 25 25 H 1.09000 * 108.82321 * 141.04574 * 24 23 14 26 26 C 1.47623 * 125.82007 * 5.01017 * 8 6 5 27 27 C 1.40282 * 118.80454 * 359.97438 * 5 4 3 28 28 O 1.35429 * 119.79554 * 180.02562 * 27 5 4 29 29 N 1.31881 * 119.41032 * 179.97438 * 2 1 3 30 30 H 1.08996 * 109.47224 * 270.02134 * 1 2 3 31 31 H 1.08999 * 109.46763 * 30.02274 * 1 2 3 32 32 H 1.08995 * 109.46973 * 150.02025 * 1 2 3 33 33 H 1.08001 * 120.27450 * 0.02562 * 3 2 1 34 34 H 1.07992 * 120.82340 * 179.97438 * 4 3 2 35 35 H 1.08999 * 110.50015 * 272.81330 * 9 8 6 36 36 H 1.08996 * 110.49600 * 35.48834 * 9 8 6 37 37 H 1.08994 * 109.06478 * 47.81252 * 12 10 9 38 38 H 1.09001 * 109.00032 * 288.84943 * 12 10 9 39 39 H 1.09002 * 108.75132 * 199.97668 * 13 12 10 40 40 H 1.08998 * 108.75813 * 81.85163 * 13 12 10 41 41 H 0.96995 * 120.00353 * 180.02562 * 18 17 15 42 42 H 1.09008 * 108.15650 * 240.76366 * 23 14 13 43 43 H 1.08998 * 107.99508 * 124.08433 * 23 14 13 44 44 H 1.09001 * 110.08089 * 299.82156 * 26 8 6 45 45 H 1.09002 * 110.08172 * 61.31601 * 26 8 6 46 46 H 0.96701 * 114.00267 * 270.00011 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5698 1.2066 0.0005 5 6 4.2356 -0.0249 0.0005 6 6 5.7097 -0.0814 0.0016 7 8 6.2879 -0.8545 0.7407 8 7 6.4156 0.7238 -0.8168 9 6 7.8827 0.7070 -0.9921 10 6 8.0980 1.2761 -2.4307 11 1 9.1097 1.6365 -2.6164 12 6 7.6702 0.1786 -3.4052 13 6 7.5633 0.7036 -4.8234 14 7 7.0017 2.0312 -4.8953 15 6 6.7319 2.5100 -6.1495 16 1 5.9060 3.1890 -6.3022 17 6 7.5198 2.1226 -7.2247 18 7 8.7448 1.6873 -7.0197 19 14 6.8414 2.2191 -8.9625 20 1 6.4755 3.6243 -9.2737 21 1 7.8730 1.7523 -9.9233 22 1 5.6365 1.3580 -9.0721 23 6 6.6937 2.9088 -3.7961 24 6 7.0452 2.4023 -2.4292 25 1 7.4319 3.2309 -1.8358 26 6 5.8555 1.7774 -1.6860 27 6 3.4758 -1.2041 0.0005 28 8 4.0992 -2.4063 0.0010 29 7 2.1546 -1.1488 0.0005 30 1 -0.3633 0.0004 1.0276 31 1 -0.3633 0.8898 -0.5142 32 1 -0.3633 -0.8901 -0.5135 33 1 1.6412 2.1376 0.0004 34 1 4.1223 2.1345 0.0001 35 1 8.3631 1.3454 -0.2507 36 1 8.2635 -0.3119 -0.9241 37 1 6.7011 -0.2135 -3.0968 38 1 8.4047 -0.6263 -3.3780 39 1 6.9355 0.0257 -5.4017 40 1 8.5588 0.7197 -5.2671 41 1 9.2955 1.4170 -7.7710 42 1 5.6238 3.1163 -3.8166 43 1 7.2227 3.8481 -3.9567 44 1 5.1559 1.3414 -2.3992 45 1 5.3519 2.5323 -1.0822 46 1 4.2806 -2.7557 -0.8822 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088120484.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:04 Heat of formation + Delta-G solvation = -25.485253 kcal Electronic energy + Delta-G solvation = -29278.601466 eV Core-core repulsion = 25361.498660 eV Total energy + Delta-G solvation = -3917.102806 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.15617 -41.14311 -39.50316 -38.34388 -37.24376 -34.68935 -33.86431 -32.99413 -32.64769 -32.00296 -29.61677 -28.70570 -27.15615 -25.51663 -24.48525 -24.03797 -23.36000 -22.90460 -21.00903 -19.72782 -19.44491 -18.88822 -18.39208 -17.99173 -17.16548 -17.06916 -16.84658 -16.53030 -15.83877 -15.69162 -15.48064 -15.29830 -15.01881 -14.88520 -14.54122 -14.27978 -14.03737 -13.90508 -13.73166 -13.57085 -13.31073 -13.09930 -13.04085 -12.96770 -12.83347 -12.71528 -12.53470 -12.23031 -12.09074 -11.82017 -11.53226 -11.40732 -11.20988 -11.15488 -10.98684 -10.56670 -10.50960 -9.94063 -9.67682 -8.59746 -7.67170 -5.43265 -0.42326 0.04848 1.46375 1.49611 1.50225 1.55593 1.81417 2.36286 2.51544 2.63999 3.18604 3.23599 3.45936 3.51411 3.60271 3.73672 3.77214 3.84872 3.93577 4.15207 4.24299 4.27648 4.37940 4.47123 4.50362 4.60827 4.64919 4.71819 4.77399 4.80466 4.88958 4.90678 4.95957 5.02525 5.05332 5.07010 5.13928 5.19928 5.28730 5.34785 5.41276 5.49359 5.69544 5.94057 6.32343 6.43020 6.47207 6.78218 6.95932 7.24075 8.06520 8.26598 9.12783 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.013689 B = 0.003498 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.897013 B = 8003.257469 C = 8957.111014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.160 3.840 3 C -0.174 4.174 4 C -0.027 4.027 5 C -0.219 4.219 6 C 0.581 3.419 7 O -0.566 6.566 8 N -0.607 5.607 9 C 0.116 3.884 10 C -0.080 4.080 11 H 0.102 0.898 12 C -0.108 4.108 13 C 0.164 3.836 14 N -0.596 5.596 15 C -0.286 4.286 16 H 0.063 0.937 17 C -0.039 4.039 18 N -0.915 5.915 19 Si 0.957 3.043 20 H -0.271 1.271 21 H -0.294 1.294 22 H -0.283 1.283 23 C 0.173 3.827 24 C -0.095 4.095 25 H 0.106 0.894 26 C 0.113 3.887 27 C 0.344 3.656 28 O -0.486 6.486 29 N -0.532 5.532 30 H 0.096 0.904 31 H 0.109 0.891 32 H 0.073 0.927 33 H 0.188 0.812 34 H 0.171 0.829 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.047 0.953 38 H 0.062 0.938 39 H -0.016 1.016 40 H 0.046 0.954 41 H 0.250 0.750 42 H 0.024 0.976 43 H 0.014 0.986 44 H 0.060 0.940 45 H 0.105 0.895 46 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.704 2.288 14.749 19.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.022 3.978 3 C -0.193 4.193 4 C -0.052 4.052 5 C -0.225 4.225 6 C 0.370 3.630 7 O -0.445 6.445 8 N -0.339 5.339 9 C -0.006 4.006 10 C -0.099 4.099 11 H 0.120 0.880 12 C -0.146 4.146 13 C 0.039 3.961 14 N -0.320 5.320 15 C -0.417 4.417 16 H 0.081 0.919 17 C -0.236 4.236 18 N -0.560 5.560 19 Si 0.785 3.215 20 H -0.197 1.197 21 H -0.220 1.220 22 H -0.210 1.210 23 C 0.048 3.952 24 C -0.114 4.114 25 H 0.124 0.876 26 C -0.008 4.008 27 C 0.165 3.835 28 O -0.296 6.296 29 N -0.252 5.252 30 H 0.115 0.885 31 H 0.128 0.872 32 H 0.092 0.908 33 H 0.205 0.795 34 H 0.189 0.811 35 H 0.108 0.892 36 H 0.088 0.912 37 H 0.065 0.935 38 H 0.081 0.919 39 H 0.002 0.998 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.042 0.958 43 H 0.032 0.968 44 H 0.079 0.921 45 H 0.123 0.877 46 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -12.743 0.998 15.756 20.289 hybrid contribution 0.716 0.070 -1.878 2.011 sum -12.027 1.068 13.878 18.396 Atomic orbital electron populations 1.20952 0.85595 1.05111 1.04649 1.22002 0.98799 0.87006 0.90019 1.22366 0.93875 1.00751 1.02335 1.22178 0.95394 0.96761 0.90916 1.20903 0.93662 0.95770 1.12201 1.17715 0.86527 0.79352 0.79389 1.90794 1.71976 1.40264 1.41484 1.48619 1.08492 1.35355 1.41474 1.22666 0.79707 1.01899 0.96348 1.22226 0.99737 0.95145 0.92780 0.87963 1.21401 1.00350 0.97869 0.94964 1.19936 0.98653 0.84019 0.93495 1.42837 1.74233 1.12578 1.02366 1.19378 1.08986 1.27467 0.85831 0.91945 1.25766 0.94650 1.01478 1.01727 1.70107 1.07188 1.47951 1.30742 0.85506 0.77308 0.78305 0.80365 1.19686 1.22026 1.20973 1.19468 0.97568 0.92048 0.86134 1.21461 0.95147 0.98789 0.96042 0.87581 1.22375 0.96384 0.89523 0.92554 1.19226 0.86799 0.84783 0.92722 1.84711 1.76848 1.32974 1.35018 1.67131 1.08820 1.32313 1.16968 0.88524 0.87208 0.90801 0.79473 0.81149 0.89178 0.91199 0.93471 0.91903 0.99826 0.93614 0.94081 0.95818 0.96764 0.92149 0.87672 0.72547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 10.16 71.24 0.72 -0.38 16 2 C 0.16 2.91 6.78 42.58 0.29 3.20 16 3 C -0.17 -2.47 9.71 22.32 0.22 -2.25 16 4 C -0.03 -0.49 8.67 22.72 0.20 -0.29 16 5 C -0.22 -5.71 5.50 -19.91 -0.11 -5.81 16 6 C 0.58 17.51 7.23 86.69 0.63 18.14 16 7 O -0.57 -21.41 16.65 8.23 0.14 -21.27 16 8 N -0.61 -15.95 2.80 -812.05 -2.28 -18.23 16 9 C 0.12 3.00 6.23 87.25 0.54 3.55 16 10 C -0.08 -2.35 3.78 -9.33 -0.04 -2.39 16 11 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 12 C -0.11 -3.87 4.98 30.09 0.15 -3.72 16 13 C 0.16 7.72 5.25 86.33 0.45 8.17 16 14 N -0.60 -28.27 3.21 -722.10 -2.32 -30.58 16 15 C -0.29 -15.24 9.22 84.03 0.77 -14.46 16 16 H 0.06 3.25 7.93 -2.91 -0.02 3.23 16 17 C -0.04 -2.10 4.97 84.86 0.42 -1.68 16 18 N -0.92 -52.54 11.01 21.65 0.24 -52.30 16 19 Si 0.96 43.78 29.61 68.60 2.03 45.82 16 20 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 21 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 22 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 23 C 0.17 6.38 5.67 85.86 0.49 6.87 16 24 C -0.10 -2.60 2.68 -11.19 -0.03 -2.63 16 25 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 26 C 0.11 2.63 4.26 86.35 0.37 3.00 16 27 C 0.34 9.76 7.74 85.13 0.66 10.42 16 28 O -0.49 -14.25 12.49 -75.03 -0.94 -15.18 16 29 N -0.53 -13.74 10.28 -296.06 -3.04 -16.78 16 30 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.11 0.53 8.07 -2.39 -0.02 0.51 16 32 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.19 1.04 8.06 -2.91 -0.02 1.02 16 34 H 0.17 2.14 5.72 -2.91 -0.02 2.12 16 35 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.07 1.97 7.98 -2.39 -0.02 1.95 16 37 H 0.05 1.68 6.77 -2.39 -0.02 1.66 16 38 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 39 H -0.02 -0.85 8.12 -2.39 -0.02 -0.87 16 40 H 0.05 2.50 5.74 -2.39 -0.01 2.49 16 41 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 42 H 0.02 0.84 7.78 -2.38 -0.02 0.82 16 43 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.06 1.61 7.83 -2.39 -0.02 1.60 16 45 H 0.11 1.67 5.90 -2.39 -0.01 1.66 16 46 H 0.41 8.73 9.06 -74.06 -0.67 8.06 16 Total: -1.00 -75.75 364.47 -0.09 -75.84 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: 0.34 Total: 12.99 kcal Atomic # 6 Polarization: 13.98 SS G_CDS: 5.74 Total: 19.72 kcal Atomic # 7 Polarization: -110.50 SS G_CDS: -7.40 Total: -117.90 kcal Atomic # 8 Polarization: -35.66 SS G_CDS: -0.80 Total: -36.46 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.82 kcal Total: -75.75 -0.09 -75.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088120484.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.354 kcal (2) G-P(sol) polarization free energy of solvation -75.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds