Wall clock time and date at job start Tue Mar 31 2020 16:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38362 * 119.40846 * 2 1 4 4 C 1.38326 * 119.45950 * 180.02562 * 3 2 1 5 5 C 1.39992 * 118.35092 * 359.97438 * 4 3 2 6 6 C 1.47521 * 120.59679 * 180.02562 * 5 4 3 7 7 O 1.21595 * 119.99843 * 165.29326 * 6 5 4 8 8 N 1.34775 * 120.00079 * 345.28924 * 6 5 4 9 9 C 1.47197 * 126.70566 * 355.19797 * 8 6 5 10 10 C 1.53740 * 106.43107 * 211.40589 * 9 8 6 11 11 H 1.08992 * 112.28549 * 103.79007 * 10 9 8 12 12 C 1.54879 * 108.86165 * 229.57238 * 10 9 8 13 13 N 1.48329 * 104.11967 * 137.56172 * 12 10 9 14 14 C 1.36932 * 128.20051 * 138.15530 * 13 12 10 15 15 H 1.08006 * 120.00146 * 336.83058 * 14 13 12 16 16 C 1.38809 * 120.00178 * 156.83292 * 14 13 12 17 17 N 1.31620 * 119.99983 * 336.66853 * 16 14 13 18 18 Si 1.86796 * 120.00193 * 156.39940 * 16 14 13 19 19 H 1.48502 * 109.47572 * 59.99669 * 18 16 14 20 20 H 1.48500 * 109.47173 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.47284 * 299.99633 * 18 16 14 22 22 C 1.48333 * 103.60114 * 317.90054 * 13 12 10 23 23 C 1.54446 * 104.32758 * 42.06302 * 22 13 12 24 24 C 1.53001 * 112.30075 * 97.55563 * 23 22 13 25 25 C 1.47205 * 126.70219 * 175.24356 * 8 6 5 26 26 C 1.40284 * 118.80371 * 0.27867 * 5 4 3 27 27 O 1.35420 * 119.79791 * 179.70087 * 26 5 4 28 28 N 1.31877 * 119.40615 * 180.02562 * 2 1 3 29 29 H 1.08995 * 109.47542 * 89.99410 * 1 2 3 30 30 H 1.09000 * 109.46940 * 210.00212 * 1 2 3 31 31 H 1.09004 * 109.46614 * 329.99587 * 1 2 3 32 32 H 1.08004 * 120.26658 * 359.97438 * 3 2 1 33 33 H 1.07998 * 120.82627 * 180.02562 * 4 3 2 34 34 H 1.08997 * 110.06110 * 330.65037 * 9 8 6 35 35 H 1.09001 * 110.05746 * 92.10914 * 9 8 6 36 36 H 1.09002 * 110.59045 * 18.89900 * 12 10 9 37 37 H 1.09000 * 110.53126 * 256.19237 * 12 10 9 38 38 H 0.97003 * 119.99890 * 354.13186 * 17 16 14 39 39 H 1.09002 * 110.46409 * 160.77669 * 22 13 12 40 40 H 1.09007 * 110.45944 * 283.22685 * 22 13 12 41 41 H 1.09004 * 109.47297 * 61.01575 * 24 23 22 42 42 H 1.09002 * 109.47605 * 181.01764 * 24 23 22 43 43 H 1.09001 * 109.47116 * 301.01414 * 24 23 22 44 44 H 1.08997 * 110.06270 * 29.35309 * 25 8 6 45 45 H 1.09001 * 110.10621 * 267.85852 * 25 8 6 46 46 H 0.96694 * 114.00288 * 90.00032 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2066 -0.0005 5 6 4.2356 -0.0249 -0.0005 6 6 5.7097 -0.0814 -0.0005 7 8 6.2782 -1.1224 0.2668 8 7 6.4263 1.0209 -0.2969 9 6 5.8973 2.3227 -0.7353 10 6 6.9600 2.9339 -1.6631 11 1 6.6825 2.8600 -2.7145 12 6 7.2393 4.3896 -1.2139 13 7 8.7147 4.5175 -1.2983 14 6 9.4473 5.5712 -1.7758 15 1 9.0036 6.2649 -2.4746 16 6 10.7604 5.7477 -1.3617 17 7 11.1651 5.2335 -0.2197 18 14 11.9551 6.7088 -2.4287 19 1 11.4489 8.0922 -2.6161 20 1 13.2838 6.7537 -1.7671 21 1 12.0822 6.0449 -3.7510 22 6 9.2085 3.2363 -0.7371 23 6 8.2714 2.1678 -1.3415 24 6 8.8806 1.4893 -2.5701 25 6 7.8911 1.1579 -0.2464 26 6 3.4758 -1.2041 -0.0059 27 8 4.0991 -2.4063 -0.0122 28 7 2.1545 -1.1489 -0.0005 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.6411 2.1376 -0.0004 33 1 4.1223 2.1345 -0.0001 34 1 4.9626 2.1828 -1.2783 35 1 5.7354 2.9699 0.1267 36 1 6.9011 4.5463 -0.1896 37 1 6.7563 5.0970 -1.8880 38 1 10.5273 4.8051 0.3724 39 1 10.2388 3.0575 -1.0447 40 1 9.1320 3.2420 0.3503 41 1 9.8044 0.9851 -2.2861 42 1 8.1761 0.7593 -2.9688 43 1 9.0953 2.2400 -3.3306 44 1 8.3637 0.1959 -0.4444 45 1 8.1990 1.5316 0.7302 46 1 4.2806 -2.7598 0.8694 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092047515.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:09 Heat of formation + Delta-G solvation = 8.785291 kcal Electronic energy + Delta-G solvation = -29045.878799 eV Core-core repulsion = 25130.262075 eV Total energy + Delta-G solvation = -3915.616724 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.26584 -40.07164 -38.33429 -37.36391 -35.33601 -33.72259 -32.47855 -31.92169 -31.44574 -29.63113 -28.42351 -26.62588 -25.72623 -25.43603 -23.51672 -23.40370 -22.14267 -20.78173 -20.01691 -18.80611 -18.66892 -17.53802 -17.25939 -16.72453 -16.14873 -15.99548 -15.34299 -14.98497 -14.76666 -14.39265 -14.21671 -13.89914 -13.76366 -13.66309 -13.33339 -13.12628 -12.88106 -12.74611 -12.52676 -12.46699 -12.39511 -11.88389 -11.82602 -11.81803 -11.23189 -11.08754 -10.75979 -10.55990 -10.42275 -10.26287 -10.22328 -10.13184 -10.07106 -9.95855 -9.61369 -9.43596 -9.14542 -8.65077 -8.53622 -7.06281 -6.18957 -3.28298 0.30799 0.79632 2.66239 2.87658 3.23650 3.44686 3.48417 3.51057 3.66292 4.12757 4.28310 4.38162 4.49060 4.58329 4.66083 4.76349 4.98575 5.01850 5.04033 5.17736 5.21368 5.24448 5.33959 5.36925 5.44149 5.55128 5.55691 5.60449 5.67511 5.73165 5.82562 5.93398 6.03009 6.06234 6.11316 6.16418 6.31838 6.46293 6.50506 6.55101 6.73088 6.81765 6.95004 7.28611 7.48677 7.58431 7.66677 8.09588 8.36953 8.88705 9.70102 10.33915 11.16087 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.024216 B = 0.002855 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.964840 B = 9804.057735 C =10542.797025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.171 3.829 3 C -0.192 4.192 4 C -0.045 4.045 5 C -0.205 4.205 6 C 0.580 3.420 7 O -0.529 6.529 8 N -0.607 5.607 9 C 0.092 3.908 10 C -0.108 4.108 11 H 0.088 0.912 12 C 0.131 3.869 13 N -0.595 5.595 14 C -0.330 4.330 15 H 0.064 0.936 16 C -0.024 4.024 17 N -0.917 5.917 18 Si 1.069 2.931 19 H -0.292 1.292 20 H -0.284 1.284 21 H -0.292 1.292 22 C 0.148 3.852 23 C -0.087 4.087 24 C -0.120 4.120 25 C 0.117 3.883 26 C 0.374 3.626 27 O -0.463 6.463 28 N -0.511 5.511 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.146 0.854 33 H 0.165 0.835 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.026 0.974 37 H 0.052 0.948 38 H 0.268 0.732 39 H 0.068 0.932 40 H 0.028 0.972 41 H 0.055 0.945 42 H 0.045 0.955 43 H 0.064 0.936 44 H 0.079 0.921 45 H 0.073 0.927 46 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.073 -8.279 1.049 20.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.033 3.967 3 C -0.212 4.212 4 C -0.071 4.071 5 C -0.211 4.211 6 C 0.369 3.631 7 O -0.407 6.407 8 N -0.340 5.340 9 C -0.031 4.031 10 C -0.129 4.129 11 H 0.106 0.894 12 C 0.004 3.996 13 N -0.319 5.319 14 C -0.457 4.457 15 H 0.082 0.918 16 C -0.226 4.226 17 N -0.557 5.557 18 Si 0.898 3.102 19 H -0.219 1.219 20 H -0.210 1.210 21 H -0.220 1.220 22 C 0.021 3.979 23 C -0.090 4.090 24 C -0.177 4.177 25 C -0.005 4.005 26 C 0.194 3.806 27 O -0.271 6.271 28 N -0.231 5.231 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.163 0.837 33 H 0.182 0.818 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.044 0.956 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.046 0.954 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.083 0.917 44 H 0.098 0.902 45 H 0.091 0.909 46 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -17.550 -9.054 0.435 19.752 hybrid contribution -1.185 0.264 0.624 1.365 sum -18.735 -8.790 1.059 20.722 Atomic orbital electron populations 1.20829 0.88137 1.03956 1.03640 1.21303 0.97081 0.87290 0.90987 1.21963 0.94537 0.99605 1.05108 1.22680 0.94872 0.98516 0.90995 1.21058 0.94767 0.94471 1.10835 1.17419 0.85566 0.82433 0.77685 1.90781 1.71663 1.28811 1.49449 1.48457 1.08317 1.11147 1.66066 1.22769 0.97999 0.84139 0.98195 1.23187 0.93256 0.97593 0.98829 0.89356 1.21937 0.88092 0.92163 0.97399 1.45128 0.99476 1.13842 1.73458 1.19707 0.97320 1.06019 1.22696 0.91838 1.25884 0.97634 1.01160 0.97947 1.70782 1.38768 1.38551 1.07565 0.83466 0.76355 0.75307 0.75072 1.21935 1.20994 1.21969 1.21848 0.96836 0.84328 0.94847 1.22386 0.96442 0.95013 0.95164 1.21571 0.99680 0.99625 0.96814 1.22272 0.78906 1.00197 0.99170 1.19099 0.86060 0.85068 0.90382 1.84673 1.76414 1.31883 1.34138 1.67142 1.09256 1.30446 1.16239 0.89764 0.90096 0.90074 0.83663 0.81806 0.90138 0.90493 0.95630 0.92959 0.92116 0.91395 0.95433 0.92640 0.93579 0.91654 0.90243 0.90936 0.73271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 10.16 36.01 0.37 -0.27 16 2 C 0.17 1.62 6.78 -82.53 -0.56 1.06 16 3 C -0.19 -1.60 9.71 -39.50 -0.38 -1.99 16 4 C -0.05 -0.46 8.25 -38.89 -0.32 -0.78 16 5 C -0.20 -2.68 5.84 -104.69 -0.61 -3.29 16 6 C 0.58 9.00 7.75 -12.48 -0.10 8.90 16 7 O -0.53 -9.59 15.56 -15.92 -0.25 -9.84 16 8 N -0.61 -8.94 3.32 -172.88 -0.57 -9.52 16 9 C 0.09 1.16 4.60 -3.28 -0.02 1.15 16 10 C -0.11 -1.67 3.77 -88.05 -0.33 -2.01 16 11 H 0.09 1.33 7.94 -51.93 -0.41 0.92 16 12 C 0.13 2.43 6.77 -2.04 -0.01 2.41 16 13 N -0.60 -14.06 3.19 -168.21 -0.54 -14.60 16 14 C -0.33 -8.86 10.21 -15.06 -0.15 -9.01 16 15 H 0.06 1.70 7.93 -52.48 -0.42 1.28 16 16 C -0.02 -0.67 5.15 -17.43 -0.09 -0.76 16 17 N -0.92 -26.86 12.82 55.49 0.71 -26.14 16 18 Si 1.07 24.59 29.98 -169.99 -5.10 19.50 16 19 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 22 C 0.15 3.18 4.33 -2.27 -0.01 3.17 16 23 C -0.09 -1.50 1.08 -152.17 -0.16 -1.66 16 24 C -0.12 -1.97 8.61 37.16 0.32 -1.65 16 25 C 0.12 1.87 6.24 -3.27 -0.02 1.85 16 26 C 0.37 5.00 7.76 -16.61 -0.13 4.87 16 27 O -0.46 -6.22 11.77 -39.16 -0.46 -6.68 16 28 N -0.51 -6.28 10.28 -9.21 -0.09 -6.37 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.30 8.07 -51.93 -0.42 -0.12 16 32 H 0.15 0.75 8.06 -52.48 -0.42 0.33 16 33 H 0.16 1.44 4.04 -52.49 -0.21 1.23 16 34 H 0.08 0.85 5.62 -51.93 -0.29 0.56 16 35 H 0.08 0.90 6.57 -51.93 -0.34 0.56 16 36 H 0.03 0.47 7.18 -51.93 -0.37 0.10 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.27 7.84 6.47 -40.82 -0.26 7.58 16 39 H 0.07 1.65 7.23 -51.93 -0.38 1.27 16 40 H 0.03 0.61 6.79 -51.92 -0.35 0.26 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.08 1.31 7.56 -51.93 -0.39 0.91 16 45 H 0.07 1.18 7.11 -51.93 -0.37 0.81 16 46 H 0.41 3.83 9.06 45.56 0.41 4.24 16 LS Contribution 363.73 15.07 5.48 5.48 Total: -1.00 -33.99 363.73 -8.59 -42.58 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -5.56 Total: 3.58 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: -2.21 Total: 2.01 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: -0.49 Total: -56.63 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -0.71 Total: -16.52 kcal Atomic # 14 Polarization: 24.59 SS G_CDS: -5.10 Total: 19.50 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.99 -8.59 -42.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092047515.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.368 kcal (2) G-P(sol) polarization free energy of solvation -33.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds