Wall clock time and date at job start Tue Mar 31 2020 16:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38362 * 119.40846 * 2 1 4 4 C 1.38326 * 119.45950 * 180.02562 * 3 2 1 5 5 C 1.39992 * 118.35092 * 359.97438 * 4 3 2 6 6 C 1.47521 * 120.59679 * 180.02562 * 5 4 3 7 7 O 1.21595 * 119.99843 * 165.29326 * 6 5 4 8 8 N 1.34775 * 120.00079 * 345.28924 * 6 5 4 9 9 C 1.47197 * 126.70566 * 355.19797 * 8 6 5 10 10 C 1.53740 * 106.43107 * 211.40589 * 9 8 6 11 11 H 1.08992 * 112.28549 * 103.79007 * 10 9 8 12 12 C 1.54879 * 108.86165 * 229.57238 * 10 9 8 13 13 N 1.48329 * 104.11967 * 137.56172 * 12 10 9 14 14 C 1.36932 * 128.20051 * 138.15530 * 13 12 10 15 15 H 1.08006 * 120.00146 * 336.83058 * 14 13 12 16 16 C 1.38809 * 120.00178 * 156.83292 * 14 13 12 17 17 N 1.31620 * 119.99983 * 336.66853 * 16 14 13 18 18 Si 1.86796 * 120.00193 * 156.39940 * 16 14 13 19 19 H 1.48502 * 109.47572 * 59.99669 * 18 16 14 20 20 H 1.48500 * 109.47173 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.47284 * 299.99633 * 18 16 14 22 22 C 1.48333 * 103.60114 * 317.90054 * 13 12 10 23 23 C 1.54446 * 104.32758 * 42.06302 * 22 13 12 24 24 C 1.53001 * 112.30075 * 97.55563 * 23 22 13 25 25 C 1.47205 * 126.70219 * 175.24356 * 8 6 5 26 26 C 1.40284 * 118.80371 * 0.27867 * 5 4 3 27 27 O 1.35420 * 119.79791 * 179.70087 * 26 5 4 28 28 N 1.31877 * 119.40615 * 180.02562 * 2 1 3 29 29 H 1.08995 * 109.47542 * 89.99410 * 1 2 3 30 30 H 1.09000 * 109.46940 * 210.00212 * 1 2 3 31 31 H 1.09004 * 109.46614 * 329.99587 * 1 2 3 32 32 H 1.08004 * 120.26658 * 359.97438 * 3 2 1 33 33 H 1.07998 * 120.82627 * 180.02562 * 4 3 2 34 34 H 1.08997 * 110.06110 * 330.65037 * 9 8 6 35 35 H 1.09001 * 110.05746 * 92.10914 * 9 8 6 36 36 H 1.09002 * 110.59045 * 18.89900 * 12 10 9 37 37 H 1.09000 * 110.53126 * 256.19237 * 12 10 9 38 38 H 0.97003 * 119.99890 * 354.13186 * 17 16 14 39 39 H 1.09002 * 110.46409 * 160.77669 * 22 13 12 40 40 H 1.09007 * 110.45944 * 283.22685 * 22 13 12 41 41 H 1.09004 * 109.47297 * 61.01575 * 24 23 22 42 42 H 1.09002 * 109.47605 * 181.01764 * 24 23 22 43 43 H 1.09001 * 109.47116 * 301.01414 * 24 23 22 44 44 H 1.08997 * 110.06270 * 29.35309 * 25 8 6 45 45 H 1.09001 * 110.10621 * 267.85852 * 25 8 6 46 46 H 0.96694 * 114.00288 * 90.00032 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2066 -0.0005 5 6 4.2356 -0.0249 -0.0005 6 6 5.7097 -0.0814 -0.0005 7 8 6.2782 -1.1224 0.2668 8 7 6.4263 1.0209 -0.2969 9 6 5.8973 2.3227 -0.7353 10 6 6.9600 2.9339 -1.6631 11 1 6.6825 2.8600 -2.7145 12 6 7.2393 4.3896 -1.2139 13 7 8.7147 4.5175 -1.2983 14 6 9.4473 5.5712 -1.7758 15 1 9.0036 6.2649 -2.4746 16 6 10.7604 5.7477 -1.3617 17 7 11.1651 5.2335 -0.2197 18 14 11.9551 6.7088 -2.4287 19 1 11.4489 8.0922 -2.6161 20 1 13.2838 6.7537 -1.7671 21 1 12.0822 6.0449 -3.7510 22 6 9.2085 3.2363 -0.7371 23 6 8.2714 2.1678 -1.3415 24 6 8.8806 1.4893 -2.5701 25 6 7.8911 1.1579 -0.2464 26 6 3.4758 -1.2041 -0.0059 27 8 4.0991 -2.4063 -0.0122 28 7 2.1545 -1.1489 -0.0005 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.6411 2.1376 -0.0004 33 1 4.1223 2.1345 -0.0001 34 1 4.9626 2.1828 -1.2783 35 1 5.7354 2.9699 0.1267 36 1 6.9011 4.5463 -0.1896 37 1 6.7563 5.0970 -1.8880 38 1 10.5273 4.8051 0.3724 39 1 10.2388 3.0575 -1.0447 40 1 9.1320 3.2420 0.3503 41 1 9.8044 0.9851 -2.2861 42 1 8.1761 0.7593 -2.9688 43 1 9.0953 2.2400 -3.3306 44 1 8.3637 0.1959 -0.4444 45 1 8.1990 1.5316 0.7302 46 1 4.2806 -2.7598 0.8694 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092047515.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:08 Heat of formation + Delta-G solvation = -15.630541 kcal Electronic energy + Delta-G solvation = -29046.937549 eV Core-core repulsion = 25130.262075 eV Total energy + Delta-G solvation = -3916.675474 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.26701 -41.22631 -39.57251 -38.30134 -36.83505 -34.92799 -33.91406 -32.86880 -32.63602 -31.17706 -29.24223 -28.09546 -27.23305 -26.85857 -24.61322 -24.39318 -23.30638 -22.29043 -21.20615 -20.16426 -19.60919 -19.31741 -18.37033 -17.75600 -17.17000 -17.07647 -16.45296 -16.27951 -16.01643 -15.86364 -15.40575 -15.21820 -15.09798 -14.94532 -14.57856 -14.26180 -14.09949 -13.80136 -13.61424 -13.34541 -13.28285 -13.08475 -12.97264 -12.77159 -12.68084 -12.62389 -12.47869 -12.24555 -11.91990 -11.73001 -11.67188 -11.54909 -11.43637 -11.22256 -10.99291 -10.56954 -10.47334 -10.02414 -9.74693 -9.01572 -8.31586 -5.36780 -0.53384 0.03118 1.58534 1.62645 1.66602 1.75402 1.84456 2.40738 2.64311 2.66601 3.12632 3.22658 3.29908 3.44619 3.61979 3.64089 3.80597 3.81446 3.90141 4.03090 4.11411 4.18340 4.24229 4.36703 4.39906 4.49740 4.58979 4.65148 4.68152 4.76994 4.80749 4.81899 4.88767 4.89528 4.95615 5.00893 5.03567 5.11708 5.15230 5.21366 5.30079 5.37290 5.49241 5.69664 6.30956 6.34814 6.47806 6.78391 6.85583 6.93181 7.67425 8.37706 9.03631 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.024216 B = 0.002855 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.964840 B = 9804.057735 C =10542.797025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.167 3.833 3 C -0.177 4.177 4 C -0.042 4.042 5 C -0.225 4.225 6 C 0.578 3.422 7 O -0.566 6.566 8 N -0.606 5.606 9 C 0.097 3.903 10 C -0.096 4.096 11 H 0.101 0.899 12 C 0.129 3.871 13 N -0.622 5.622 14 C -0.330 4.330 15 H 0.063 0.937 16 C -0.080 4.080 17 N -0.950 5.950 18 Si 1.116 2.884 19 H -0.272 1.272 20 H -0.295 1.295 21 H -0.281 1.281 22 C 0.157 3.843 23 C -0.080 4.080 24 C -0.114 4.114 25 C 0.123 3.877 26 C 0.357 3.643 27 O -0.483 6.483 28 N -0.533 5.533 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.110 0.890 32 H 0.188 0.812 33 H 0.181 0.819 34 H 0.113 0.887 35 H 0.095 0.905 36 H 0.036 0.964 37 H 0.060 0.940 38 H 0.254 0.746 39 H 0.029 0.971 40 H 0.015 0.985 41 H 0.052 0.948 42 H 0.063 0.937 43 H 0.050 0.950 44 H 0.072 0.928 45 H 0.067 0.933 46 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.431 -7.190 0.152 23.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.029 3.971 3 C -0.196 4.196 4 C -0.067 4.067 5 C -0.231 4.231 6 C 0.369 3.631 7 O -0.446 6.446 8 N -0.338 5.338 9 C -0.025 4.025 10 C -0.117 4.117 11 H 0.119 0.881 12 C 0.004 3.996 13 N -0.347 5.347 14 C -0.458 4.458 15 H 0.081 0.919 16 C -0.275 4.275 17 N -0.593 5.593 18 Si 0.940 3.060 19 H -0.198 1.198 20 H -0.222 1.222 21 H -0.207 1.207 22 C 0.030 3.970 23 C -0.082 4.082 24 C -0.171 4.171 25 C 0.000 4.000 26 C 0.177 3.823 27 O -0.293 6.293 28 N -0.254 5.254 29 H 0.114 0.886 30 H 0.094 0.906 31 H 0.129 0.871 32 H 0.205 0.795 33 H 0.198 0.802 34 H 0.131 0.869 35 H 0.113 0.887 36 H 0.053 0.947 37 H 0.078 0.922 38 H 0.064 0.936 39 H 0.048 0.952 40 H 0.032 0.968 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.069 0.931 44 H 0.090 0.910 45 H 0.085 0.915 46 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -20.967 -7.959 -0.471 22.432 hybrid contribution -0.289 -0.080 0.929 0.976 sum -21.257 -8.039 0.458 22.731 Atomic orbital electron populations 1.20974 0.85494 1.05219 1.04715 1.22054 0.98824 0.86997 0.89232 1.22404 0.93798 1.00822 1.02624 1.22869 0.95820 0.97692 0.90338 1.20888 0.93010 0.95789 1.13444 1.17848 0.86675 0.81808 0.76785 1.90754 1.72619 1.30142 1.51100 1.48426 1.07467 1.11875 1.66038 1.22890 0.97960 0.83075 0.98580 1.23087 0.93060 0.95299 1.00235 0.88091 1.22130 0.84967 0.94296 0.98203 1.45372 1.01871 1.13833 1.73580 1.19973 0.97772 1.06298 1.21797 0.91928 1.27166 0.99783 1.02222 0.98367 1.70894 1.38508 1.41017 1.08838 0.82837 0.73982 0.75296 0.73870 1.19789 1.22150 1.20719 1.21685 0.95812 0.85321 0.94135 1.22224 0.96342 0.94236 0.95433 1.21507 1.00116 0.99438 0.96054 1.22038 0.80286 0.99302 0.98363 1.19263 0.86677 0.85001 0.91382 1.84618 1.76764 1.32537 1.35375 1.67204 1.08731 1.32210 1.17221 0.88560 0.90583 0.87122 0.79477 0.80232 0.86912 0.88745 0.94666 0.92176 0.93597 0.95215 0.96756 0.92854 0.91810 0.93101 0.90992 0.91531 0.72117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 10.16 71.24 0.72 -0.10 16 2 C 0.17 2.58 6.78 42.58 0.29 2.87 16 3 C -0.18 -2.12 9.71 22.32 0.22 -1.90 16 4 C -0.04 -0.70 8.25 22.72 0.19 -0.51 16 5 C -0.22 -5.50 5.84 -19.91 -0.12 -5.61 16 6 C 0.58 17.46 7.75 86.69 0.67 18.13 16 7 O -0.57 -20.80 15.56 16.26 0.25 -20.54 16 8 N -0.61 -16.90 3.32 -819.13 -2.72 -19.62 16 9 C 0.10 2.13 4.60 86.50 0.40 2.53 16 10 C -0.10 -2.76 3.77 -9.13 -0.03 -2.80 16 11 H 0.10 2.71 7.94 -2.39 -0.02 2.69 16 12 C 0.13 4.57 6.77 86.67 0.59 5.16 16 13 N -0.62 -29.52 3.19 -686.09 -2.19 -31.71 16 14 C -0.33 -17.83 10.21 84.03 0.86 -16.97 16 15 H 0.06 3.32 7.93 -2.91 -0.02 3.30 16 16 C -0.08 -4.46 5.15 84.86 0.44 -4.02 16 17 N -0.95 -57.54 12.82 21.65 0.28 -57.26 16 18 Si 1.12 50.10 29.98 68.60 2.06 52.16 16 19 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 20 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 21 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 22 C 0.16 6.95 4.33 86.52 0.37 7.33 16 23 C -0.08 -2.70 1.08 -50.67 -0.05 -2.76 16 24 C -0.11 -3.72 8.61 71.98 0.62 -3.10 16 25 C 0.12 3.92 6.24 86.50 0.54 4.46 16 26 C 0.36 9.27 7.76 85.13 0.66 9.93 16 27 O -0.48 -13.25 11.77 -66.88 -0.79 -14.04 16 28 N -0.53 -12.25 10.28 -296.05 -3.04 -15.29 16 29 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.11 0.22 8.07 -2.38 -0.02 0.20 16 32 H 0.19 0.66 8.06 -2.91 -0.02 0.64 16 33 H 0.18 2.28 4.04 -2.91 -0.01 2.27 16 34 H 0.11 1.84 5.62 -2.39 -0.01 1.83 16 35 H 0.09 1.82 6.57 -2.39 -0.02 1.80 16 36 H 0.04 1.20 7.18 -2.39 -0.02 1.18 16 37 H 0.06 2.02 8.14 -2.39 -0.02 2.01 16 38 H 0.25 15.55 6.47 -92.71 -0.60 14.95 16 39 H 0.03 1.51 7.23 -2.39 -0.02 1.50 16 40 H 0.01 0.68 6.79 -2.38 -0.02 0.66 16 41 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 42 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.07 2.40 7.56 -2.39 -0.02 2.39 16 45 H 0.07 2.20 7.11 -2.39 -0.02 2.18 16 46 H 0.42 8.35 9.06 -74.06 -0.67 7.68 16 Total: -1.00 -77.27 363.73 0.73 -76.54 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: 0.52 Total: 17.13 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: 6.36 Total: 12.64 kcal Atomic # 7 Polarization: -116.21 SS G_CDS: -7.68 Total: -123.89 kcal Atomic # 8 Polarization: -34.04 SS G_CDS: -0.53 Total: -34.58 kcal Atomic # 14 Polarization: 50.10 SS G_CDS: 2.06 Total: 52.16 kcal Total: -77.27 0.73 -76.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092047515.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.912 kcal (2) G-P(sol) polarization free energy of solvation -77.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds