Wall clock time and date at job start Tue Mar 31 2020 17:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35652 * 116.99738 * 2 1 4 4 C 1.39349 * 120.54014 * 359.97438 * 3 2 1 5 5 C 1.38300 * 118.43939 * 179.77067 * 4 3 2 6 6 C 1.50695 * 120.28125 * 180.24785 * 5 4 3 7 7 C 1.38769 * 119.44123 * 0.50224 * 5 4 3 8 8 N 1.31376 * 121.06814 * 359.48337 * 7 5 4 9 9 C 1.32861 * 121.69678 * 0.26479 * 8 7 5 10 10 C 1.47824 * 119.78262 * 180.02562 * 9 8 7 11 11 O 1.21555 * 120.00173 * 179.97438 * 10 9 8 12 12 N 1.34776 * 120.00529 * 359.97438 * 10 9 8 13 13 C 1.46498 * 120.00465 * 179.97438 * 12 10 9 14 14 H 1.08998 * 110.55827 * 32.77234 * 13 12 10 15 15 C 1.54859 * 110.62561 * 155.67361 * 13 12 10 16 16 C 1.55846 * 103.44174 * 118.48983 * 15 13 12 17 17 H 1.09002 * 115.55815 * 158.81085 * 16 15 13 18 18 C 1.55839 * 105.06529 * 288.17472 * 16 15 13 19 19 C 1.54850 * 103.44731 * 71.82774 * 18 16 15 20 20 C 1.55838 * 103.44501 * 359.97438 * 19 18 16 21 21 H 1.09003 * 116.13075 * 159.14823 * 20 19 18 22 22 N 1.50238 * 101.05148 * 32.93970 * 20 19 18 23 23 C 1.36938 * 130.84183 * 126.02655 * 22 20 19 24 24 H 1.07995 * 120.00266 * 190.16543 * 23 22 20 25 25 C 1.38819 * 119.99513 * 10.16931 * 23 22 20 26 26 N 1.31617 * 120.00308 * 8.99674 * 25 23 22 27 27 Si 1.86803 * 119.99668 * 188.99990 * 25 23 22 28 28 H 1.48501 * 109.47015 * 84.98497 * 27 25 23 29 29 H 1.48494 * 109.47027 * 204.98656 * 27 25 23 30 30 H 1.48508 * 109.47199 * 324.98724 * 27 25 23 31 31 H 1.08998 * 109.47438 * 59.99666 * 1 2 3 32 32 H 1.08994 * 109.46817 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46945 * 299.99636 * 1 2 3 34 34 H 1.07997 * 120.78366 * 0.03027 * 4 3 2 35 35 H 1.09001 * 109.46933 * 270.25926 * 6 5 4 36 36 H 1.09005 * 109.46890 * 30.25656 * 6 5 4 37 37 H 1.08991 * 109.47313 * 150.25626 * 6 5 4 38 38 H 1.07997 * 119.46698 * 179.77052 * 7 5 4 39 39 H 0.97008 * 119.99520 * 359.97438 * 12 10 9 40 40 H 1.08998 * 110.62504 * 236.97677 * 15 13 12 41 41 H 1.08992 * 110.62510 * 359.84538 * 15 13 12 42 42 H 1.09007 * 110.62637 * 190.31874 * 18 16 15 43 43 H 1.09004 * 110.62895 * 313.33765 * 18 16 15 44 44 H 1.09004 * 110.62750 * 241.51272 * 19 18 16 45 45 H 1.08998 * 110.76470 * 118.55274 * 19 18 16 46 46 H 0.96993 * 119.99956 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2969 2.3844 -0.0005 5 6 1.9695 3.5929 0.0044 6 6 1.2019 4.8897 0.0096 7 6 3.3571 3.6012 -0.0010 8 7 4.0419 2.4800 -0.0005 9 6 3.4409 1.2951 -0.0001 10 6 4.2531 0.0599 0.0011 11 8 3.7075 -1.0263 0.0020 12 7 5.5986 0.1380 0.0012 13 6 6.4035 -1.0860 0.0029 14 1 5.8969 -1.8780 -0.5485 15 6 7.8068 -0.8170 -0.5942 16 6 8.7712 -1.1438 0.5856 17 1 9.7994 -1.3706 0.3034 18 6 8.5796 0.0231 1.6005 19 6 7.1764 -0.2458 2.1977 20 6 6.7110 -1.5382 1.4617 21 1 5.9248 -2.1129 1.9514 22 7 8.0209 -2.2492 1.2721 23 6 8.4111 -3.5151 1.6187 24 1 9.4508 -3.7985 1.5469 25 6 7.4702 -4.4343 2.0625 26 7 6.1870 -4.1527 1.9837 27 14 8.0255 -6.0709 2.7715 28 1 8.3357 -5.9056 4.2143 29 1 6.9421 -7.0735 2.6098 30 1 9.2403 -6.5346 2.0540 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8901 34 1 0.2174 2.3528 -0.0005 35 1 1.0128 5.2041 -1.0168 36 1 0.2529 4.7481 0.5269 37 1 1.7846 5.6547 0.5225 38 1 3.8827 4.5447 -0.0009 39 1 6.0341 1.0049 0.0002 40 1 7.9972 -1.4776 -1.4400 41 1 7.9028 0.2264 -0.8941 42 1 9.3419 -0.0157 2.3787 43 1 8.6009 0.9851 1.0883 44 1 6.5018 0.5827 1.9815 45 1 7.2400 -0.4173 3.2722 46 1 5.5296 -4.7951 2.2934 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095549224.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:16 Heat of formation + Delta-G solvation = 17.737640 kcal Electronic energy + Delta-G solvation = -29170.892421 eV Core-core repulsion = 25255.663900 eV Total energy + Delta-G solvation = -3915.228521 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.98469 -39.52971 -38.32351 -37.82075 -33.99923 -33.43865 -32.25816 -31.07093 -29.32239 -28.75242 -28.30187 -27.79391 -26.88911 -24.16389 -23.56786 -22.63960 -21.29812 -20.51001 -19.44961 -18.50867 -17.95972 -17.49322 -17.16648 -16.76747 -16.04400 -15.34913 -14.95649 -14.75859 -14.57210 -14.31463 -14.18921 -13.97810 -13.83711 -13.65582 -13.37672 -12.93544 -12.77621 -12.44038 -12.19395 -11.95413 -11.68647 -11.57871 -11.55702 -11.46845 -10.94092 -10.82066 -10.73548 -10.68125 -10.20199 -10.02030 -9.98489 -9.76158 -9.70945 -9.34740 -9.21181 -9.15669 -8.81649 -8.50312 -8.05727 -6.76672 -5.61691 -2.99533 0.61354 1.10287 3.05123 3.07369 3.46630 3.50744 3.53656 3.61994 4.00012 4.24311 4.35258 4.53340 4.60210 4.68698 4.80930 4.88776 4.98168 5.18606 5.22535 5.28791 5.35049 5.40954 5.47138 5.59621 5.68299 5.80070 5.87780 5.88779 5.93729 6.10848 6.16838 6.22415 6.24602 6.40978 6.43093 6.64841 6.72354 6.86564 6.96837 7.07125 7.11803 7.16293 7.42107 7.64440 7.67553 7.90064 8.21193 8.29426 8.88415 9.18559 9.83368 10.66558 11.48939 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.016711 B = 0.003443 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.134430 B = 8129.449278 C = 9318.767569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.267 6.267 3 C 0.140 3.860 4 C -0.181 4.181 5 C -0.081 4.081 6 C -0.113 4.113 7 C 0.054 3.946 8 N -0.417 5.417 9 C 0.047 3.953 10 C 0.561 3.439 11 O -0.506 6.506 12 N -0.697 5.697 13 C 0.127 3.873 14 H 0.089 0.911 15 C -0.138 4.138 16 C 0.130 3.870 17 H 0.086 0.914 18 C -0.129 4.129 19 C -0.141 4.141 20 C 0.159 3.841 21 H 0.141 0.859 22 N -0.589 5.589 23 C -0.221 4.221 24 H 0.077 0.923 25 C -0.008 4.008 26 N -0.908 5.908 27 Si 0.911 3.089 28 H -0.290 1.290 29 H -0.291 1.291 30 H -0.282 1.282 31 H 0.054 0.946 32 H 0.106 0.894 33 H 0.055 0.945 34 H 0.143 0.857 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.162 0.838 39 H 0.399 0.601 40 H 0.062 0.938 41 H 0.057 0.943 42 H 0.052 0.948 43 H 0.049 0.951 44 H 0.052 0.948 45 H 0.050 0.950 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.839 19.403 -5.146 22.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.176 6.176 3 C 0.089 3.911 4 C -0.207 4.207 5 C -0.084 4.084 6 C -0.170 4.170 7 C -0.107 4.107 8 N -0.128 5.128 9 C -0.092 4.092 10 C 0.344 3.656 11 O -0.380 6.380 12 N -0.348 5.348 13 C 0.021 3.979 14 H 0.107 0.893 15 C -0.178 4.178 16 C 0.022 3.978 17 H 0.104 0.896 18 C -0.168 4.168 19 C -0.181 4.181 20 C 0.051 3.949 21 H 0.158 0.842 22 N -0.310 5.310 23 C -0.349 4.349 24 H 0.095 0.905 25 C -0.205 4.205 26 N -0.554 5.554 27 Si 0.742 3.258 28 H -0.217 1.217 29 H -0.218 1.218 30 H -0.208 1.208 31 H 0.073 0.927 32 H 0.124 0.876 33 H 0.074 0.926 34 H 0.161 0.839 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.179 0.821 39 H 0.235 0.765 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.069 0.931 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.285 17.991 -5.049 21.330 hybrid contribution -0.784 -0.137 0.348 0.869 sum -11.069 17.854 -4.701 21.526 Atomic orbital electron populations 1.23210 0.78803 1.04732 1.00874 1.86498 1.20663 1.24312 1.86148 1.20088 0.92418 0.85645 0.92955 1.21589 1.00774 0.91310 1.07055 1.20941 0.95276 0.95632 0.96516 1.20788 0.99851 0.93458 1.02901 1.22567 0.90527 0.96447 1.01121 1.67637 1.39714 0.97355 1.08048 1.20981 0.88748 0.93082 1.06402 1.17561 0.82708 0.86923 0.78447 1.90892 1.71489 1.27156 1.48436 1.46007 1.05224 1.10340 1.73229 1.22732 0.89472 0.84789 1.00880 0.89294 1.23189 0.96344 0.99407 0.98866 1.22979 0.94835 0.88948 0.91032 0.89589 1.22946 0.97665 0.97285 0.98933 1.23022 0.95761 0.99585 0.99718 1.23609 0.90862 0.89082 0.91329 0.84178 1.46457 1.09254 1.09679 1.65635 1.18951 0.92788 0.85810 1.37399 0.90478 1.24810 0.95206 0.98040 1.02464 1.69705 0.99173 1.35477 1.51015 0.86154 0.77267 0.83389 0.79014 1.21706 1.21754 1.20822 0.92728 0.87571 0.92639 0.83892 0.90425 0.91165 0.90628 0.82112 0.76518 0.91914 0.92488 0.92943 0.93221 0.92898 0.93107 0.93491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.83 101.05 0.99 1.18 16 2 O -0.27 -4.19 8.56 -40.61 -0.35 -4.53 16 3 C 0.14 2.05 6.71 -38.56 -0.26 1.79 16 4 C -0.18 -1.90 8.81 -39.15 -0.34 -2.24 16 5 C -0.08 -0.74 5.90 -104.40 -0.62 -1.36 16 6 C -0.11 -0.59 10.03 36.00 0.36 -0.23 16 7 C 0.05 0.57 10.85 -17.55 -0.19 0.38 16 8 N -0.42 -5.86 9.54 -9.71 -0.09 -5.95 16 9 C 0.05 0.78 6.76 -82.89 -0.56 0.22 16 10 C 0.56 11.27 7.80 -12.34 -0.10 11.17 16 11 O -0.51 -12.20 14.79 -16.63 -0.25 -12.44 16 12 N -0.70 -13.13 3.70 -52.37 -0.19 -13.32 16 13 C 0.13 2.77 3.15 -65.46 -0.21 2.57 16 14 H 0.09 2.28 7.57 -51.93 -0.39 1.89 16 15 C -0.14 -2.64 6.20 -24.23 -0.15 -2.79 16 16 C 0.13 2.68 5.48 -62.82 -0.34 2.33 16 17 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 18 C -0.13 -2.40 6.44 -24.24 -0.16 -2.56 16 19 C -0.14 -2.96 6.32 -24.24 -0.15 -3.11 16 20 C 0.16 3.93 4.50 -62.84 -0.28 3.65 16 21 H 0.14 4.11 5.89 -51.93 -0.31 3.81 16 22 N -0.59 -15.20 2.97 -145.88 -0.43 -15.63 16 23 C -0.22 -6.26 10.55 -15.06 -0.16 -6.42 16 24 H 0.08 2.10 7.84 -52.49 -0.41 1.69 16 25 C -0.01 -0.23 5.47 -17.43 -0.10 -0.33 16 26 N -0.91 -27.63 10.75 55.49 0.60 -27.03 16 27 Si 0.91 22.70 29.56 -169.99 -5.03 17.67 16 28 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 29 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 30 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 31 H 0.05 0.41 7.70 -51.93 -0.40 0.01 16 32 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.06 0.43 7.70 -51.93 -0.40 0.03 16 34 H 0.14 1.06 6.46 -52.49 -0.34 0.73 16 35 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 37 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 38 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 39 H 0.40 6.60 7.23 -40.82 -0.30 6.31 16 40 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.06 0.92 7.40 -51.93 -0.38 0.54 16 42 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.05 0.79 7.82 -51.93 -0.41 0.38 16 44 H 0.05 1.01 6.38 -51.93 -0.33 0.68 16 45 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.25 7.60 8.31 -40.82 -0.34 7.27 16 LS Contribution 369.38 15.07 5.57 5.57 Total: -1.00 -35.03 369.38 -9.04 -44.07 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -6.60 Total: 7.34 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: -2.26 Total: 4.27 kcal Atomic # 7 Polarization: -61.81 SS G_CDS: -0.12 Total: -61.94 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -0.59 Total: -16.97 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.03 Total: 17.67 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.03 -9.04 -44.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095549224.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.805 kcal (2) G-P(sol) polarization free energy of solvation -35.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds