Wall clock time and date at job start Tue Mar 31 2020 17:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35652 * 116.99738 * 2 1 4 4 C 1.39349 * 120.54014 * 359.97438 * 3 2 1 5 5 C 1.38300 * 118.43939 * 179.77067 * 4 3 2 6 6 C 1.50695 * 120.28125 * 180.24785 * 5 4 3 7 7 C 1.38769 * 119.44123 * 0.50224 * 5 4 3 8 8 N 1.31376 * 121.06814 * 359.48337 * 7 5 4 9 9 C 1.32861 * 121.69678 * 0.26479 * 8 7 5 10 10 C 1.47824 * 119.78262 * 180.02562 * 9 8 7 11 11 O 1.21555 * 120.00173 * 179.97438 * 10 9 8 12 12 N 1.34776 * 120.00529 * 359.97438 * 10 9 8 13 13 C 1.46498 * 120.00465 * 179.97438 * 12 10 9 14 14 H 1.08998 * 110.55827 * 32.77234 * 13 12 10 15 15 C 1.54859 * 110.62561 * 155.67361 * 13 12 10 16 16 C 1.55846 * 103.44174 * 118.48983 * 15 13 12 17 17 H 1.09002 * 115.55815 * 158.81085 * 16 15 13 18 18 C 1.55839 * 105.06529 * 288.17472 * 16 15 13 19 19 C 1.54850 * 103.44731 * 71.82774 * 18 16 15 20 20 C 1.55838 * 103.44501 * 359.97438 * 19 18 16 21 21 H 1.09003 * 116.13075 * 159.14823 * 20 19 18 22 22 N 1.50238 * 101.05148 * 32.93970 * 20 19 18 23 23 C 1.36938 * 130.84183 * 126.02655 * 22 20 19 24 24 H 1.07995 * 120.00266 * 190.16543 * 23 22 20 25 25 C 1.38819 * 119.99513 * 10.16931 * 23 22 20 26 26 N 1.31617 * 120.00308 * 8.99674 * 25 23 22 27 27 Si 1.86803 * 119.99668 * 188.99990 * 25 23 22 28 28 H 1.48501 * 109.47015 * 84.98497 * 27 25 23 29 29 H 1.48494 * 109.47027 * 204.98656 * 27 25 23 30 30 H 1.48508 * 109.47199 * 324.98724 * 27 25 23 31 31 H 1.08998 * 109.47438 * 59.99666 * 1 2 3 32 32 H 1.08994 * 109.46817 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46945 * 299.99636 * 1 2 3 34 34 H 1.07997 * 120.78366 * 0.03027 * 4 3 2 35 35 H 1.09001 * 109.46933 * 270.25926 * 6 5 4 36 36 H 1.09005 * 109.46890 * 30.25656 * 6 5 4 37 37 H 1.08991 * 109.47313 * 150.25626 * 6 5 4 38 38 H 1.07997 * 119.46698 * 179.77052 * 7 5 4 39 39 H 0.97008 * 119.99520 * 359.97438 * 12 10 9 40 40 H 1.08998 * 110.62504 * 236.97677 * 15 13 12 41 41 H 1.08992 * 110.62510 * 359.84538 * 15 13 12 42 42 H 1.09007 * 110.62637 * 190.31874 * 18 16 15 43 43 H 1.09004 * 110.62895 * 313.33765 * 18 16 15 44 44 H 1.09004 * 110.62750 * 241.51272 * 19 18 16 45 45 H 1.08998 * 110.76470 * 118.55274 * 19 18 16 46 46 H 0.96993 * 119.99956 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2969 2.3844 -0.0005 5 6 1.9695 3.5929 0.0044 6 6 1.2019 4.8897 0.0096 7 6 3.3571 3.6012 -0.0010 8 7 4.0419 2.4800 -0.0005 9 6 3.4409 1.2951 -0.0001 10 6 4.2531 0.0599 0.0011 11 8 3.7075 -1.0263 0.0020 12 7 5.5986 0.1380 0.0012 13 6 6.4035 -1.0860 0.0029 14 1 5.8969 -1.8780 -0.5485 15 6 7.8068 -0.8170 -0.5942 16 6 8.7712 -1.1438 0.5856 17 1 9.7994 -1.3706 0.3034 18 6 8.5796 0.0231 1.6005 19 6 7.1764 -0.2458 2.1977 20 6 6.7110 -1.5382 1.4617 21 1 5.9248 -2.1129 1.9514 22 7 8.0209 -2.2492 1.2721 23 6 8.4111 -3.5151 1.6187 24 1 9.4508 -3.7985 1.5469 25 6 7.4702 -4.4343 2.0625 26 7 6.1870 -4.1527 1.9837 27 14 8.0255 -6.0709 2.7715 28 1 8.3357 -5.9056 4.2143 29 1 6.9421 -7.0735 2.6098 30 1 9.2403 -6.5346 2.0540 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8901 34 1 0.2174 2.3528 -0.0005 35 1 1.0128 5.2041 -1.0168 36 1 0.2529 4.7481 0.5269 37 1 1.7846 5.6547 0.5225 38 1 3.8827 4.5447 -0.0009 39 1 6.0341 1.0049 0.0002 40 1 7.9972 -1.4776 -1.4400 41 1 7.9028 0.2264 -0.8941 42 1 9.3419 -0.0157 2.3787 43 1 8.6009 0.9851 1.0883 44 1 6.5018 0.5827 1.9815 45 1 7.2400 -0.4173 3.2722 46 1 5.5296 -4.7951 2.2934 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095549224.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:15 Heat of formation + Delta-G solvation = -5.922356 kcal Electronic energy + Delta-G solvation = -29171.918396 eV Core-core repulsion = 25255.663900 eV Total energy + Delta-G solvation = -3916.254495 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.03984 -41.14060 -39.44654 -39.24916 -35.37631 -34.72693 -34.17833 -32.01062 -31.04098 -30.52673 -29.64805 -28.84626 -27.93367 -26.09677 -24.58537 -23.62928 -22.78006 -22.03908 -21.21911 -20.19328 -19.21142 -18.77825 -18.48765 -18.16676 -17.04143 -16.86774 -16.74722 -16.27885 -15.98892 -15.89797 -15.41480 -15.05524 -14.81642 -14.75973 -14.57073 -14.05238 -13.83009 -13.57124 -13.56354 -13.43142 -13.18060 -12.97903 -12.86233 -12.78786 -12.59277 -12.40495 -12.37610 -12.30689 -11.98192 -11.87382 -11.66333 -11.25218 -11.14027 -10.95317 -10.77057 -10.58518 -10.49920 -9.88161 -9.42532 -8.82477 -7.79291 -5.18619 -0.36391 0.23189 1.43682 1.47003 1.54960 1.82636 2.16576 2.24640 2.50941 2.83056 3.24016 3.34819 3.52737 3.58021 3.75413 3.93278 4.00153 4.08721 4.13917 4.17673 4.20699 4.31678 4.32819 4.44210 4.47575 4.61557 4.66978 4.71675 4.75412 4.77468 4.87003 4.89811 5.04122 5.10801 5.13236 5.17891 5.21743 5.31071 5.41043 5.46818 5.50855 5.55811 5.77523 5.87368 6.19515 6.23534 6.58235 6.88277 6.99618 7.40285 7.70727 8.58927 9.29797 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.016711 B = 0.003443 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.134430 B = 8129.449278 C = 9318.767569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.313 6.313 3 C 0.125 3.875 4 C -0.177 4.177 5 C -0.059 4.059 6 C -0.111 4.111 7 C 0.054 3.946 8 N -0.429 5.429 9 C 0.000 4.000 10 C 0.554 3.446 11 O -0.564 6.564 12 N -0.683 5.683 13 C 0.140 3.860 14 H 0.035 0.965 15 C -0.123 4.123 16 C 0.126 3.874 17 H 0.105 0.895 18 C -0.113 4.113 19 C -0.130 4.130 20 C 0.144 3.856 21 H 0.084 0.916 22 N -0.618 5.618 23 C -0.224 4.224 24 H 0.086 0.914 25 C -0.074 4.074 26 N -0.944 5.944 27 Si 0.977 3.023 28 H -0.287 1.287 29 H -0.301 1.301 30 H -0.265 1.265 31 H 0.079 0.921 32 H 0.106 0.894 33 H 0.076 0.924 34 H 0.176 0.824 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.200 0.800 39 H 0.414 0.586 40 H 0.057 0.943 41 H 0.101 0.899 42 H 0.057 0.943 43 H 0.094 0.906 44 H 0.070 0.930 45 H 0.032 0.968 46 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.489 24.055 -5.730 26.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.224 6.224 3 C 0.074 3.926 4 C -0.203 4.203 5 C -0.062 4.062 6 C -0.168 4.168 7 C -0.109 4.109 8 N -0.140 5.140 9 C -0.136 4.136 10 C 0.340 3.660 11 O -0.442 6.442 12 N -0.336 5.336 13 C 0.033 3.967 14 H 0.053 0.947 15 C -0.163 4.163 16 C 0.020 3.980 17 H 0.123 0.877 18 C -0.152 4.152 19 C -0.170 4.170 20 C 0.036 3.964 21 H 0.102 0.898 22 N -0.340 5.340 23 C -0.353 4.353 24 H 0.104 0.896 25 C -0.267 4.267 26 N -0.593 5.593 27 Si 0.806 3.194 28 H -0.214 1.214 29 H -0.228 1.228 30 H -0.190 1.190 31 H 0.098 0.902 32 H 0.124 0.876 33 H 0.094 0.906 34 H 0.193 0.807 35 H 0.114 0.886 36 H 0.102 0.898 37 H 0.113 0.887 38 H 0.217 0.783 39 H 0.252 0.748 40 H 0.076 0.924 41 H 0.119 0.881 42 H 0.076 0.924 43 H 0.112 0.888 44 H 0.089 0.911 45 H 0.051 0.949 46 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -9.889 22.693 -5.650 25.391 hybrid contribution -1.019 -1.389 0.499 1.794 sum -10.908 21.304 -5.150 24.482 Atomic orbital electron populations 1.23500 0.76275 1.05609 1.03029 1.86436 1.23594 1.25894 1.86469 1.20328 0.92198 0.86702 0.93356 1.21970 1.02226 0.90144 1.05920 1.21482 0.95105 0.96908 0.92669 1.20939 1.00143 0.91275 1.04456 1.23331 0.91648 0.96477 0.99411 1.67529 1.40473 0.97349 1.08645 1.20364 0.89215 0.92373 1.11600 1.18261 0.83001 0.87889 0.76812 1.90846 1.72518 1.29846 1.50989 1.45759 1.04979 1.09788 1.73044 1.22207 0.90980 0.84881 0.98618 0.94688 1.23113 0.93338 1.01903 0.97961 1.23314 0.95469 0.87779 0.91457 0.87677 1.22873 0.95518 0.98300 0.98528 1.22885 0.97937 0.97919 0.98247 1.23341 0.89681 0.90246 0.93145 0.89843 1.46750 1.10471 1.10057 1.66699 1.19385 0.93100 0.87013 1.35833 0.89582 1.25674 0.95261 1.01783 1.03943 1.70020 1.00265 1.36126 1.52886 0.85105 0.76900 0.79147 0.78262 1.21420 1.22814 1.19008 0.90225 0.87602 0.90576 0.80663 0.88599 0.89752 0.88746 0.78323 0.74753 0.92392 0.88126 0.92403 0.88810 0.91132 0.94928 0.94846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.83 113.37 1.11 1.31 16 2 O -0.31 -10.42 8.56 -68.68 -0.59 -11.01 16 3 C 0.13 3.71 6.71 22.93 0.15 3.87 16 4 C -0.18 -3.24 8.81 22.55 0.20 -3.05 16 5 C -0.06 -0.84 5.90 -19.72 -0.12 -0.96 16 6 C -0.11 -0.53 10.03 71.23 0.71 0.18 16 7 C 0.05 0.95 10.85 84.89 0.92 1.87 16 8 N -0.43 -11.44 9.54 -184.64 -1.76 -13.20 16 9 C 0.00 0.02 6.76 41.92 0.28 0.30 16 10 C 0.55 23.89 7.80 86.78 0.68 24.57 16 11 O -0.56 -30.12 14.79 17.10 0.25 -29.86 16 12 N -0.68 -26.64 3.70 -437.88 -1.62 -28.26 16 13 C 0.14 6.44 3.15 46.59 0.15 6.59 16 14 H 0.03 1.97 7.57 -2.39 -0.02 1.95 16 15 C -0.12 -4.59 6.20 32.21 0.20 -4.39 16 16 C 0.13 4.99 5.48 46.23 0.25 5.25 16 17 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 18 C -0.11 -3.90 6.44 32.21 0.21 -3.69 16 19 C -0.13 -5.48 6.32 32.21 0.20 -5.27 16 20 C 0.14 7.52 4.50 46.20 0.21 7.73 16 21 H 0.08 5.38 5.89 -2.39 -0.01 5.37 16 22 N -0.62 -32.73 2.97 -615.45 -1.83 -34.56 16 23 C -0.22 -13.06 10.55 84.03 0.89 -12.17 16 24 H 0.09 4.71 7.84 -2.91 -0.02 4.69 16 25 C -0.07 -4.45 5.47 84.86 0.46 -3.99 16 26 N -0.94 -61.98 10.75 21.65 0.23 -61.75 16 27 Si 0.98 48.68 29.56 68.60 2.03 50.71 16 28 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 29 H -0.30 -15.32 7.11 99.48 0.71 -14.62 16 30 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 31 H 0.08 1.08 7.70 -2.39 -0.02 1.06 16 32 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.08 1.10 7.70 -2.38 -0.02 1.08 16 34 H 0.18 1.94 6.46 -2.91 -0.02 1.92 16 35 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 36 H 0.08 0.26 8.09 -2.38 -0.02 0.24 16 37 H 0.09 0.19 8.09 -2.39 -0.02 0.18 16 38 H 0.20 1.84 8.06 -2.91 -0.02 1.82 16 39 H 0.41 13.31 7.23 -92.70 -0.67 12.64 16 40 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.10 2.88 7.40 -2.39 -0.02 2.86 16 42 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 43 H 0.09 2.47 7.82 -2.38 -0.02 2.45 16 44 H 0.07 2.67 6.38 -2.38 -0.02 2.65 16 45 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.24 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -87.57 369.38 3.57 -84.00 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: 0.34 Total: 25.80 kcal Atomic # 6 Polarization: 11.62 SS G_CDS: 6.52 Total: 18.13 kcal Atomic # 7 Polarization: -132.79 SS G_CDS: -4.98 Total: -137.77 kcal Atomic # 8 Polarization: -40.54 SS G_CDS: -0.33 Total: -40.87 kcal Atomic # 14 Polarization: 48.68 SS G_CDS: 2.03 Total: 50.71 kcal Total: -87.57 3.57 -84.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095549224.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.075 kcal (2) G-P(sol) polarization free energy of solvation -87.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds