Wall clock time and date at job start Tue Mar 31 2020 16:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35688 * 116.99873 * 2 1 4 4 C 1.38897 * 119.62163 * 179.97438 * 3 2 1 5 5 C 1.39566 * 118.94444 * 180.02562 * 4 3 2 6 6 C 1.48165 * 120.89029 * 180.02562 * 5 4 3 7 7 O 1.21515 * 119.99957 * 180.02562 * 6 5 4 8 8 N 1.34777 * 119.99954 * 0.02562 * 6 5 4 9 9 C 1.46500 * 119.99899 * 180.02562 * 8 6 5 10 10 H 1.08996 * 110.68743 * 37.44556 * 9 8 6 11 11 C 1.54851 * 110.62616 * 160.44219 * 9 8 6 12 12 C 1.55849 * 103.44670 * 118.48914 * 11 9 8 13 13 H 1.09000 * 115.55952 * 158.81278 * 12 11 9 14 14 C 1.55842 * 105.06086 * 288.17146 * 12 11 9 15 15 C 1.55880 * 103.52950 * 72.42849 * 14 12 11 16 16 C 1.55845 * 102.96908 * 359.12271 * 15 14 12 17 17 H 1.08998 * 115.55808 * 159.68821 * 16 15 14 18 18 N 1.50230 * 101.05338 * 32.93514 * 12 11 9 19 19 C 1.36937 * 130.84168 * 126.01297 * 18 12 11 20 20 H 1.08003 * 120.00463 * 172.00773 * 19 18 12 21 21 C 1.38812 * 119.99453 * 352.00765 * 19 18 12 22 22 N 1.31619 * 120.00435 * 6.23680 * 21 19 18 23 23 Si 1.86807 * 119.99749 * 186.23295 * 21 19 18 24 24 H 1.48507 * 109.46783 * 94.98439 * 23 21 19 25 25 H 1.48494 * 109.46984 * 214.98228 * 23 21 19 26 26 H 1.48498 * 109.46911 * 334.98508 * 23 21 19 27 27 C 1.39971 * 118.21832 * 0.27914 * 5 4 3 28 28 C 1.37977 * 119.13276 * 359.47495 * 27 5 4 29 29 C 1.50703 * 119.51126 * 180.25581 * 28 27 5 30 30 N 1.31907 * 120.97697 * 0.53735 * 28 27 5 31 31 H 1.09001 * 109.47004 * 299.99427 * 1 2 3 32 32 H 1.09001 * 109.47186 * 59.99801 * 1 2 3 33 33 H 1.09003 * 109.46677 * 180.02562 * 1 2 3 34 34 H 1.08003 * 120.52646 * 359.97438 * 4 3 2 35 35 H 0.97000 * 119.99924 * 359.97438 * 8 6 5 36 36 H 1.08999 * 110.62739 * 359.97438 * 11 9 8 37 37 H 1.09004 * 110.62036 * 236.97731 * 11 9 8 38 38 H 1.09000 * 110.62956 * 190.31884 * 14 12 11 39 39 H 1.09003 * 110.62960 * 313.17617 * 14 12 11 40 40 H 1.08995 * 110.09895 * 241.13602 * 15 14 12 41 41 H 1.08996 * 111.59650 * 117.80768 * 15 14 12 42 42 H 0.97002 * 120.00100 * 179.97438 * 22 21 19 43 43 H 1.07997 * 120.43192 * 179.70600 * 27 5 4 44 44 H 1.09000 * 109.46769 * 270.27985 * 29 28 27 45 45 H 1.09004 * 109.46815 * 30.27868 * 29 28 27 46 46 H 1.08997 * 109.47072 * 150.28009 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4325 1.2726 0.0005 5 6 4.0513 2.5235 0.0011 6 6 5.5283 2.6415 0.0011 7 8 6.0501 3.7390 0.0020 8 7 6.2930 1.5317 0.0001 9 6 7.7533 1.6484 0.0007 10 1 8.0725 2.4854 0.6217 11 6 8.4057 0.3300 0.4845 12 6 9.2498 -0.1284 -0.7428 13 1 10.0615 -0.8218 -0.5228 14 6 8.2057 -0.6062 -1.7965 15 6 7.5586 0.7209 -2.2965 16 6 8.2920 1.8070 -1.4532 17 1 8.2602 2.8182 -1.8589 18 7 9.6583 1.1961 -1.3223 19 6 10.8953 1.6936 -1.6347 20 1 10.9824 2.6291 -2.1674 21 6 12.0372 0.9956 -1.2665 22 7 11.9324 -0.2007 -0.7278 23 14 13.7230 1.7541 -1.5358 24 1 14.1651 2.4324 -0.2909 25 1 14.6943 0.6884 -1.8906 26 1 13.6494 2.7445 -2.6399 27 6 3.2393 3.6636 0.0071 28 6 1.8680 3.5116 0.0011 29 6 0.9856 4.7333 0.0016 30 7 1.3178 2.3127 0.0006 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 4.0231 0.3683 0.0014 35 1 5.8764 0.6557 -0.0003 36 1 7.6428 -0.4105 0.7244 37 1 9.0484 0.5132 1.3457 38 1 8.7003 -1.1160 -2.6234 39 1 7.4639 -1.2575 -1.3342 40 1 6.4906 0.7220 -2.0789 41 1 7.7349 0.8771 -3.3607 42 1 12.7304 -0.6886 -0.4709 43 1 3.6805 4.6494 0.0124 44 1 0.7729 5.0274 1.0294 45 1 1.4945 5.5492 -0.5119 46 1 0.0514 4.5070 -0.5123 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095930222.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:16 Heat of formation + Delta-G solvation = 14.975923 kcal Electronic energy + Delta-G solvation = -28598.282455 eV Core-core repulsion = 24682.934177 eV Total energy + Delta-G solvation = -3915.348278 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.11517 -39.93614 -38.60695 -37.85872 -34.24119 -33.25095 -32.26908 -31.98678 -29.29579 -29.05695 -28.62574 -27.74150 -26.78251 -24.67819 -23.77279 -22.95555 -21.42300 -20.53880 -19.53941 -18.80664 -18.44720 -17.24435 -16.97495 -16.67699 -16.33985 -15.89269 -15.33642 -15.11660 -14.83673 -14.49417 -14.43059 -14.17091 -14.08857 -13.79632 -13.39220 -12.76326 -12.68201 -12.43979 -12.32059 -12.28369 -11.96851 -11.78977 -11.51904 -11.30841 -11.08241 -10.94461 -10.91266 -10.83150 -10.27429 -10.24880 -10.09764 -10.06308 -9.90901 -9.74085 -9.39148 -9.33710 -8.89259 -8.70603 -8.58332 -6.92248 -5.76059 -3.12938 0.51434 0.88653 2.74047 2.87117 3.23208 3.39689 3.45237 3.46466 3.63462 3.84231 4.42198 4.53325 4.65207 4.78576 4.88333 4.97853 5.02334 5.13895 5.19565 5.21859 5.28189 5.34103 5.36163 5.50666 5.63469 5.67011 5.77056 5.81345 5.86826 5.93391 6.05156 6.08793 6.09359 6.26264 6.30170 6.50737 6.57549 6.62219 6.77902 6.91454 6.93078 6.96816 7.23334 7.52620 7.53590 7.64814 7.77812 8.14192 8.31444 9.08314 9.71103 10.52195 11.34262 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.023078 B = 0.002745 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.007250 B =10197.844594 C =10996.694489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.306 6.306 3 C 0.322 3.678 4 C -0.167 4.167 5 C -0.041 4.041 6 C 0.552 3.448 7 O -0.527 6.527 8 N -0.700 5.700 9 C 0.127 3.873 10 H 0.085 0.915 11 C -0.139 4.139 12 C 0.154 3.846 13 H 0.154 0.846 14 C -0.138 4.138 15 C -0.131 4.131 16 C 0.128 3.872 17 H 0.086 0.914 18 N -0.589 5.589 19 C -0.212 4.212 20 H 0.079 0.921 21 C -0.010 4.010 22 N -0.921 5.921 23 Si 0.915 3.085 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C -0.155 4.155 28 C 0.162 3.838 29 C -0.104 4.104 30 N -0.530 5.530 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.096 0.904 34 H 0.146 0.854 35 H 0.396 0.604 36 H 0.055 0.945 37 H 0.068 0.932 38 H 0.054 0.946 39 H 0.046 0.954 40 H 0.049 0.951 41 H 0.053 0.947 42 H 0.254 0.746 43 H 0.151 0.849 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.140 1.325 2.641 23.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.213 6.213 3 C 0.143 3.857 4 C -0.188 4.188 5 C -0.052 4.052 6 C 0.337 3.663 7 O -0.404 6.404 8 N -0.351 5.351 9 C 0.022 3.978 10 H 0.103 0.897 11 C -0.179 4.179 12 C 0.048 3.952 13 H 0.171 0.829 14 C -0.178 4.178 15 C -0.170 4.170 16 C 0.019 3.981 17 H 0.104 0.896 18 N -0.310 5.310 19 C -0.340 4.340 20 H 0.097 0.903 21 C -0.205 4.205 22 N -0.569 5.569 23 Si 0.745 3.255 24 H -0.216 1.216 25 H -0.218 1.218 26 H -0.207 1.207 27 C -0.176 4.176 28 C 0.026 3.974 29 C -0.161 4.161 30 N -0.255 5.255 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.115 0.885 34 H 0.164 0.836 35 H 0.232 0.768 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.168 0.832 44 H 0.100 0.900 45 H 0.100 0.900 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -23.152 1.748 2.624 23.366 hybrid contribution 1.169 0.005 -0.126 1.176 sum -21.983 1.753 2.498 22.194 Atomic orbital electron populations 1.22864 0.77113 1.03019 1.02439 1.86265 1.22993 1.24149 1.87845 1.19583 0.88936 0.84663 0.92496 1.21198 0.92352 0.98616 1.06677 1.20324 0.94427 0.92974 0.97473 1.18031 0.85467 0.85108 0.77685 1.90788 1.73963 1.26248 1.49382 1.46210 1.08014 1.07983 1.72866 1.22732 0.75763 0.99533 0.99807 0.89653 1.23292 0.98790 0.94635 1.01216 1.23728 0.93634 0.89704 0.88165 0.82948 1.23248 0.98449 0.95690 1.00403 1.23078 0.97562 0.97059 0.99313 1.23199 0.86602 0.95689 0.92592 0.89643 1.46473 0.99703 1.12446 1.72340 1.19061 0.80972 1.04418 1.29536 0.90297 1.24743 0.97739 0.96897 1.01145 1.69471 1.27472 1.11789 1.48142 0.86040 0.83669 0.78060 0.77684 1.21620 1.21779 1.20663 1.21945 0.93163 1.00005 1.02483 1.20886 0.91678 0.91833 0.92970 1.20759 0.99056 0.92825 1.03456 1.66972 1.41206 0.98481 1.18889 0.92303 0.92265 0.88538 0.83644 0.76833 0.92678 0.91351 0.92722 0.93491 0.93254 0.92805 0.93531 0.83165 0.90002 0.90042 0.90333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.38 101.05 1.05 1.36 16 2 O -0.31 -3.28 10.47 -18.77 -0.20 -3.47 16 3 C 0.32 3.78 7.49 -17.16 -0.13 3.65 16 4 C -0.17 -1.93 9.55 -38.84 -0.37 -2.30 16 5 C -0.04 -0.53 5.91 -104.68 -0.62 -1.15 16 6 C 0.55 8.60 7.79 -12.18 -0.09 8.50 16 7 O -0.53 -10.02 16.18 5.35 0.09 -9.93 16 8 N -0.70 -10.41 3.61 -52.23 -0.19 -10.60 16 9 C 0.13 2.35 3.07 -65.43 -0.20 2.15 16 10 H 0.09 1.76 7.72 -51.93 -0.40 1.36 16 11 C -0.14 -2.61 6.20 -24.23 -0.15 -2.76 16 12 C 0.15 3.42 4.71 -62.81 -0.30 3.12 16 13 H 0.15 3.87 5.57 -51.93 -0.29 3.58 16 14 C -0.14 -2.62 6.46 -23.68 -0.15 -2.78 16 15 C -0.13 -2.40 6.42 -23.67 -0.15 -2.55 16 16 C 0.13 2.67 5.29 -62.80 -0.33 2.34 16 17 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 18 N -0.59 -14.54 2.98 -145.82 -0.43 -14.97 16 19 C -0.21 -5.81 10.57 -15.06 -0.16 -5.97 16 20 H 0.08 2.13 7.84 -52.48 -0.41 1.72 16 21 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 22 N -0.92 -25.88 10.52 55.49 0.58 -25.29 16 23 Si 0.91 21.91 29.56 -169.99 -5.02 16.88 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 C -0.16 -1.82 9.30 -39.03 -0.36 -2.19 16 28 C 0.16 1.71 6.77 -82.65 -0.56 1.15 16 29 C -0.10 -0.72 10.16 36.01 0.37 -0.35 16 30 N -0.53 -6.05 9.09 -9.59 -0.09 -6.14 16 31 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 32 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 33 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.15 1.42 6.53 -52.48 -0.34 1.08 16 35 H 0.40 4.89 6.20 -40.82 -0.25 4.63 16 36 H 0.05 0.86 7.34 -51.93 -0.38 0.48 16 37 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.05 0.75 7.82 -51.93 -0.41 0.34 16 40 H 0.05 0.78 6.57 -51.93 -0.34 0.44 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 43 H 0.15 1.69 7.74 -52.49 -0.41 1.28 16 44 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.08 0.46 8.08 -51.93 -0.42 0.04 16 46 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 372.22 15.07 5.61 5.61 Total: -1.00 -31.48 372.22 -8.50 -39.98 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -6.59 Total: 6.08 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -2.26 Total: 1.86 kcal Atomic # 7 Polarization: -56.88 SS G_CDS: -0.13 Total: -57.00 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -0.11 Total: -13.41 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.48 -8.50 -39.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095930222.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.951 kcal (2) G-P(sol) polarization free energy of solvation -31.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds