Wall clock time and date at job start Tue Mar 31 2020 16:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35688 * 116.99873 * 2 1 4 4 C 1.38897 * 119.62163 * 179.97438 * 3 2 1 5 5 C 1.39566 * 118.94444 * 180.02562 * 4 3 2 6 6 C 1.48165 * 120.89029 * 180.02562 * 5 4 3 7 7 O 1.21515 * 119.99957 * 180.02562 * 6 5 4 8 8 N 1.34777 * 119.99954 * 0.02562 * 6 5 4 9 9 C 1.46500 * 119.99899 * 180.02562 * 8 6 5 10 10 H 1.08996 * 110.68743 * 37.44556 * 9 8 6 11 11 C 1.54851 * 110.62616 * 160.44219 * 9 8 6 12 12 C 1.55849 * 103.44670 * 118.48914 * 11 9 8 13 13 H 1.09000 * 115.55952 * 158.81278 * 12 11 9 14 14 C 1.55842 * 105.06086 * 288.17146 * 12 11 9 15 15 C 1.55880 * 103.52950 * 72.42849 * 14 12 11 16 16 C 1.55845 * 102.96908 * 359.12271 * 15 14 12 17 17 H 1.08998 * 115.55808 * 159.68821 * 16 15 14 18 18 N 1.50230 * 101.05338 * 32.93514 * 12 11 9 19 19 C 1.36937 * 130.84168 * 126.01297 * 18 12 11 20 20 H 1.08003 * 120.00463 * 172.00773 * 19 18 12 21 21 C 1.38812 * 119.99453 * 352.00765 * 19 18 12 22 22 N 1.31619 * 120.00435 * 6.23680 * 21 19 18 23 23 Si 1.86807 * 119.99749 * 186.23295 * 21 19 18 24 24 H 1.48507 * 109.46783 * 94.98439 * 23 21 19 25 25 H 1.48494 * 109.46984 * 214.98228 * 23 21 19 26 26 H 1.48498 * 109.46911 * 334.98508 * 23 21 19 27 27 C 1.39971 * 118.21832 * 0.27914 * 5 4 3 28 28 C 1.37977 * 119.13276 * 359.47495 * 27 5 4 29 29 C 1.50703 * 119.51126 * 180.25581 * 28 27 5 30 30 N 1.31907 * 120.97697 * 0.53735 * 28 27 5 31 31 H 1.09001 * 109.47004 * 299.99427 * 1 2 3 32 32 H 1.09001 * 109.47186 * 59.99801 * 1 2 3 33 33 H 1.09003 * 109.46677 * 180.02562 * 1 2 3 34 34 H 1.08003 * 120.52646 * 359.97438 * 4 3 2 35 35 H 0.97000 * 119.99924 * 359.97438 * 8 6 5 36 36 H 1.08999 * 110.62739 * 359.97438 * 11 9 8 37 37 H 1.09004 * 110.62036 * 236.97731 * 11 9 8 38 38 H 1.09000 * 110.62956 * 190.31884 * 14 12 11 39 39 H 1.09003 * 110.62960 * 313.17617 * 14 12 11 40 40 H 1.08995 * 110.09895 * 241.13602 * 15 14 12 41 41 H 1.08996 * 111.59650 * 117.80768 * 15 14 12 42 42 H 0.97002 * 120.00100 * 179.97438 * 22 21 19 43 43 H 1.07997 * 120.43192 * 179.70600 * 27 5 4 44 44 H 1.09000 * 109.46769 * 270.27985 * 29 28 27 45 45 H 1.09004 * 109.46815 * 30.27868 * 29 28 27 46 46 H 1.08997 * 109.47072 * 150.28009 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4325 1.2726 0.0005 5 6 4.0513 2.5235 0.0011 6 6 5.5283 2.6415 0.0011 7 8 6.0501 3.7390 0.0020 8 7 6.2930 1.5317 0.0001 9 6 7.7533 1.6484 0.0007 10 1 8.0725 2.4854 0.6217 11 6 8.4057 0.3300 0.4845 12 6 9.2498 -0.1284 -0.7428 13 1 10.0615 -0.8218 -0.5228 14 6 8.2057 -0.6062 -1.7965 15 6 7.5586 0.7209 -2.2965 16 6 8.2920 1.8070 -1.4532 17 1 8.2602 2.8182 -1.8589 18 7 9.6583 1.1961 -1.3223 19 6 10.8953 1.6936 -1.6347 20 1 10.9824 2.6291 -2.1674 21 6 12.0372 0.9956 -1.2665 22 7 11.9324 -0.2007 -0.7278 23 14 13.7230 1.7541 -1.5358 24 1 14.1651 2.4324 -0.2909 25 1 14.6943 0.6884 -1.8906 26 1 13.6494 2.7445 -2.6399 27 6 3.2393 3.6636 0.0071 28 6 1.8680 3.5116 0.0011 29 6 0.9856 4.7333 0.0016 30 7 1.3178 2.3127 0.0006 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 4.0231 0.3683 0.0014 35 1 5.8764 0.6557 -0.0003 36 1 7.6428 -0.4105 0.7244 37 1 9.0484 0.5132 1.3457 38 1 8.7003 -1.1160 -2.6234 39 1 7.4639 -1.2575 -1.3342 40 1 6.4906 0.7220 -2.0789 41 1 7.7349 0.8771 -3.3607 42 1 12.7304 -0.6886 -0.4709 43 1 3.6805 4.6494 0.0124 44 1 0.7729 5.0274 1.0294 45 1 1.4945 5.5492 -0.5119 46 1 0.0514 4.5070 -0.5123 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095930222.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:15 Heat of formation + Delta-G solvation = -5.659193 kcal Electronic energy + Delta-G solvation = -28599.177260 eV Core-core repulsion = 24682.934177 eV Total energy + Delta-G solvation = -3916.243084 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.07833 -41.27483 -39.88004 -38.81818 -35.66303 -34.54366 -33.85358 -32.79908 -30.96837 -30.75371 -29.36948 -29.22712 -27.51218 -26.31831 -25.12464 -23.77131 -22.88671 -21.86862 -21.15687 -20.25114 -19.55235 -18.85636 -18.02649 -17.80005 -17.11013 -16.98278 -16.75276 -16.54734 -16.45260 -15.91501 -15.47352 -15.40290 -15.14902 -14.91871 -14.38650 -14.09283 -13.92168 -13.48979 -13.35472 -13.28657 -13.25339 -13.04159 -12.90454 -12.80797 -12.64256 -12.60067 -12.39517 -12.01546 -11.99368 -11.91626 -11.61294 -11.43847 -11.11696 -11.05193 -10.99436 -10.79643 -10.74066 -10.07313 -9.51719 -8.85771 -7.81850 -5.19944 -0.43482 0.03766 1.46059 1.47912 1.55790 1.75795 1.87974 2.10061 2.49382 2.69040 3.09960 3.31888 3.44028 3.57159 3.80797 3.91910 3.94089 4.02272 4.08343 4.14002 4.35395 4.41284 4.45075 4.47257 4.47394 4.57106 4.59694 4.69506 4.77923 4.79615 4.79671 4.88513 4.95180 5.00675 5.04684 5.07253 5.14371 5.16578 5.31558 5.36419 5.43740 5.53345 5.70672 5.87848 6.15282 6.26148 6.46060 6.70620 7.03926 7.10566 7.68162 8.55029 9.25897 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.023078 B = 0.002745 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.007250 B =10197.844594 C =10996.694489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.314 6.314 3 C 0.314 3.686 4 C -0.165 4.165 5 C -0.052 4.052 6 C 0.556 3.444 7 O -0.567 6.567 8 N -0.687 5.687 9 C 0.146 3.854 10 H 0.059 0.941 11 C -0.125 4.125 12 C 0.139 3.861 13 H 0.120 0.880 14 C -0.127 4.127 15 C -0.117 4.117 16 C 0.119 3.881 17 H 0.067 0.933 18 N -0.617 5.617 19 C -0.227 4.227 20 H 0.071 0.929 21 C -0.059 4.059 22 N -0.941 5.941 23 Si 0.973 3.027 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.275 1.275 27 C -0.163 4.163 28 C 0.164 3.836 29 C -0.102 4.102 30 N -0.534 5.534 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.123 0.877 34 H 0.165 0.835 35 H 0.413 0.587 36 H 0.097 0.903 37 H 0.049 0.951 38 H 0.036 0.964 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.045 0.955 42 H 0.250 0.750 43 H 0.150 0.850 44 H 0.095 0.905 45 H 0.094 0.906 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.973 0.681 2.790 26.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.220 6.220 3 C 0.135 3.865 4 C -0.186 4.186 5 C -0.063 4.063 6 C 0.343 3.657 7 O -0.446 6.446 8 N -0.339 5.339 9 C 0.039 3.961 10 H 0.077 0.923 11 C -0.165 4.165 12 C 0.033 3.967 13 H 0.138 0.862 14 C -0.166 4.166 15 C -0.157 4.157 16 C 0.011 3.989 17 H 0.085 0.915 18 N -0.339 5.339 19 C -0.356 4.356 20 H 0.089 0.911 21 C -0.253 4.253 22 N -0.590 5.590 23 Si 0.802 3.198 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.200 1.200 27 C -0.184 4.184 28 C 0.028 3.972 29 C -0.159 4.159 30 N -0.260 5.260 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.141 0.859 34 H 0.182 0.818 35 H 0.252 0.748 36 H 0.115 0.885 37 H 0.067 0.933 38 H 0.055 0.945 39 H 0.107 0.893 40 H 0.100 0.900 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.168 0.832 44 H 0.114 0.886 45 H 0.113 0.887 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -26.048 1.076 2.771 26.217 hybrid contribution 1.921 0.235 -0.173 1.943 sum -24.127 1.311 2.598 24.302 Atomic orbital electron populations 1.23101 0.75517 1.04815 1.02432 1.86255 1.24590 1.23597 1.87602 1.19761 0.89193 0.85150 0.92372 1.21304 0.92662 0.98579 1.06072 1.20048 0.92481 0.94204 0.99522 1.18396 0.86606 0.84369 0.76321 1.90775 1.74978 1.27787 1.51074 1.45912 1.06288 1.08950 1.72721 1.22177 0.77825 0.98532 0.97528 0.92322 1.23123 0.98991 0.95432 0.98914 1.23657 0.94074 0.88490 0.90479 0.86227 1.23149 0.98278 0.96213 0.98944 1.22979 0.98966 0.95471 0.98245 1.23323 0.85579 0.95514 0.94494 0.91498 1.46717 1.00102 1.14112 1.72972 1.19281 0.82793 1.04201 1.29298 0.91147 1.25430 1.00602 0.97491 1.01741 1.69687 1.27687 1.12514 1.49090 0.85132 0.79938 0.77247 0.77457 1.21733 1.21815 1.20037 1.22076 0.93821 0.99810 1.02732 1.21367 0.91604 0.92656 0.91611 1.20869 0.98795 0.91630 1.04606 1.67073 1.41328 0.98727 1.18827 0.92249 0.92291 0.85932 0.81778 0.74778 0.88454 0.93260 0.94485 0.89287 0.89980 0.93659 0.94063 0.83187 0.88643 0.88747 0.89589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.38 113.37 1.18 1.62 16 2 O -0.31 -5.85 10.47 -90.07 -0.94 -6.79 16 3 C 0.31 6.57 7.49 84.80 0.63 7.21 16 4 C -0.16 -3.36 9.55 22.75 0.22 -3.15 16 5 C -0.05 -1.25 5.91 -19.90 -0.12 -1.37 16 6 C 0.56 16.66 7.79 86.88 0.68 17.34 16 7 O -0.57 -21.63 16.18 -3.76 -0.06 -21.69 16 8 N -0.69 -18.98 3.61 -437.46 -1.58 -20.56 16 9 C 0.15 5.33 3.07 46.61 0.14 5.47 16 10 H 0.06 2.48 7.72 -2.39 -0.02 2.46 16 11 C -0.13 -4.53 6.20 32.21 0.20 -4.33 16 12 C 0.14 6.15 4.71 46.23 0.22 6.36 16 13 H 0.12 6.21 5.57 -2.39 -0.01 6.19 16 14 C -0.13 -4.55 6.46 32.57 0.21 -4.34 16 15 C -0.12 -4.11 6.42 32.57 0.21 -3.90 16 16 C 0.12 4.98 5.29 46.23 0.24 5.22 16 17 H 0.07 3.00 8.14 -2.39 -0.02 2.99 16 18 N -0.62 -31.14 2.98 -615.24 -1.83 -32.97 16 19 C -0.23 -12.83 10.57 84.03 0.89 -11.94 16 20 H 0.07 3.96 7.84 -2.91 -0.02 3.93 16 21 C -0.06 -3.35 5.50 84.86 0.47 -2.88 16 22 N -0.94 -54.33 10.52 21.65 0.23 -54.11 16 23 Si 0.97 46.11 29.56 68.60 2.03 48.14 16 24 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 25 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 26 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 27 C -0.16 -3.61 9.30 22.63 0.21 -3.40 16 28 C 0.16 3.09 6.77 42.49 0.29 3.38 16 29 C -0.10 -1.16 10.16 71.24 0.72 -0.44 16 30 N -0.53 -10.94 9.09 -297.16 -2.70 -13.64 16 31 H 0.06 0.73 8.10 -2.39 -0.02 0.71 16 32 H 0.06 0.73 8.10 -2.39 -0.02 0.71 16 33 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.16 2.58 6.53 -2.91 -0.02 2.56 16 35 H 0.41 8.61 6.20 -92.71 -0.57 8.04 16 36 H 0.10 2.67 7.34 -2.39 -0.02 2.65 16 37 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.09 2.45 7.82 -2.39 -0.02 2.44 16 40 H 0.08 2.33 6.57 -2.39 -0.02 2.31 16 41 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 43 H 0.15 3.26 7.74 -2.91 -0.02 3.23 16 44 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.09 0.84 8.08 -2.38 -0.02 0.82 16 46 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -70.79 372.22 1.96 -68.83 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: 0.43 Total: 21.93 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: 6.39 Total: 10.87 kcal Atomic # 7 Polarization: -115.40 SS G_CDS: -5.89 Total: -121.28 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -1.00 Total: -28.48 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -70.79 1.96 -68.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095930222.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.169 kcal (2) G-P(sol) polarization free energy of solvation -70.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds