Wall clock time and date at job start Tue Mar 31 2020 17:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.36404 * 120.34951 * 2 1 4 4 C 1.40195 * 119.26858 * 179.97438 * 3 2 1 5 5 C 1.35340 * 119.94737 * 0.02562 * 4 3 2 6 6 N 1.35761 * 120.70516 * 359.97438 * 5 4 3 7 7 C 1.46500 * 119.62853 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.46823 * 90.00149 * 7 6 5 9 9 O 1.21282 * 119.99937 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99792 * 180.02562 * 8 7 6 11 11 C 1.46497 * 119.99845 * 180.02562 * 10 8 7 12 12 H 1.09004 * 110.56332 * 32.10280 * 11 10 8 13 13 C 1.54852 * 110.62915 * 269.02602 * 11 10 8 14 14 C 1.55847 * 103.44696 * 241.51122 * 13 11 10 15 15 H 1.08997 * 116.12428 * 159.14277 * 14 13 11 16 16 C 1.55837 * 105.06326 * 288.17353 * 14 13 11 17 17 C 1.54849 * 103.44699 * 71.82332 * 16 14 13 18 18 C 1.55842 * 103.44649 * 0.02562 * 17 16 14 19 19 H 1.08997 * 116.13209 * 159.15158 * 18 17 16 20 20 N 1.50231 * 101.05042 * 32.93196 * 18 17 16 21 21 C 1.36943 * 130.83524 * 126.05651 * 20 18 17 22 22 H 1.08007 * 119.99980 * 359.97438 * 21 20 18 23 23 C 1.38810 * 119.99954 * 180.02562 * 21 20 18 24 24 N 1.31618 * 120.00378 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00018 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47016 * 89.99620 * 25 23 21 27 27 H 1.48499 * 109.47202 * 209.99771 * 25 23 21 28 28 H 1.48503 * 109.47178 * 329.99980 * 25 23 21 29 29 C 1.34660 * 120.74953 * 0.02562 * 6 5 4 30 30 O 1.22067 * 119.98897 * 179.97438 * 29 6 5 31 31 H 1.09005 * 109.47416 * 0.02562 * 1 2 3 32 32 H 1.09007 * 109.46733 * 120.00045 * 1 2 3 33 33 H 1.08997 * 109.47225 * 239.99965 * 1 2 3 34 34 H 1.08007 * 120.36418 * 0.24943 * 3 2 1 35 35 H 1.08000 * 120.02663 * 179.97438 * 4 3 2 36 36 H 1.08005 * 119.64808 * 179.97438 * 5 4 3 37 37 H 1.09000 * 109.47549 * 210.00205 * 7 6 5 38 38 H 1.08996 * 109.46916 * 330.00778 * 7 6 5 39 39 H 0.96997 * 120.00306 * 0.02562 * 10 8 7 40 40 H 1.09000 * 110.62129 * 359.97438 * 13 11 10 41 41 H 1.08994 * 110.62794 * 123.01827 * 13 11 10 42 42 H 1.09001 * 110.62501 * 190.31712 * 16 14 13 43 43 H 1.08999 * 110.62724 * 313.17729 * 16 14 13 44 44 H 1.09000 * 110.62948 * 241.51078 * 17 16 14 45 45 H 1.09008 * 110.62562 * 118.48966 * 17 16 14 46 46 H 0.96994 * 120.00459 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1962 1.1771 0.0000 4 6 3.5979 1.1507 0.0005 5 6 4.2512 -0.0346 0.0005 6 7 3.5637 -1.2052 0.0005 7 6 4.2949 -2.4747 0.0000 8 6 4.5461 -2.9102 1.4206 9 8 4.1526 -2.2277 2.3427 10 7 5.2080 -4.0582 1.6664 11 6 5.4518 -4.4819 3.0474 12 1 4.6384 -4.1577 3.6966 13 6 6.8094 -3.9359 3.5541 14 6 7.6248 -5.2265 3.8674 15 1 8.7084 -5.1132 3.9014 16 6 6.9699 -5.8176 5.1520 17 6 5.6123 -6.3636 4.6455 18 6 5.6321 -6.0287 3.1236 19 1 4.9595 -6.6121 2.4948 20 7 7.0968 -6.1636 2.8181 21 6 7.7495 -6.9102 1.8737 22 1 7.1868 -7.5346 1.1954 23 6 9.1343 -6.8653 1.7888 24 7 9.8200 -6.1048 2.6157 25 14 10.0246 -7.8843 0.5010 26 1 10.1705 -7.0895 -0.7450 27 1 11.3686 -8.2595 1.0090 28 1 9.2425 -9.1138 0.2150 29 6 2.2171 -1.2127 0.0000 30 8 1.6129 -2.2734 -0.0005 31 1 -0.3634 1.0277 -0.0005 32 1 -0.3633 -0.5139 -0.8901 33 1 -0.3633 -0.5138 0.8899 34 1 1.6678 2.1191 0.0041 35 1 4.1558 2.0754 0.0001 36 1 5.3312 -0.0493 0.0005 37 1 3.7049 -3.2336 -0.5138 38 1 5.2473 -2.3451 -0.5141 39 1 5.5231 -4.6039 0.9289 40 1 7.3015 -3.3503 2.7776 41 1 6.6711 -3.3405 4.4565 42 1 7.5806 -6.6239 5.5582 43 1 6.8184 -5.0385 5.8991 44 1 4.7850 -5.8547 5.1402 45 1 5.5497 -7.4408 4.8004 46 1 10.7876 -6.0732 2.5561 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097067135.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:19 Heat of formation + Delta-G solvation = 11.287041 kcal Electronic energy + Delta-G solvation = -28853.171788 eV Core-core repulsion = 24937.663548 eV Total energy + Delta-G solvation = -3915.508240 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.57272 -39.74748 -38.37917 -36.92455 -35.21655 -33.88605 -32.59428 -31.37187 -29.41126 -29.16462 -28.54438 -27.33664 -27.13717 -24.28201 -23.29110 -22.56080 -21.47607 -20.06653 -19.83403 -18.75298 -17.58570 -17.43828 -17.28704 -17.04389 -16.34550 -15.61690 -15.30536 -14.93651 -14.81712 -14.50842 -14.04442 -13.97219 -13.89891 -13.46213 -13.06695 -12.86716 -12.80967 -12.40149 -12.29185 -12.07318 -11.99177 -11.85528 -11.67535 -11.28778 -11.17672 -10.99130 -10.95453 -10.57958 -10.41094 -10.32564 -10.15145 -10.00175 -9.95635 -9.69037 -9.29630 -9.20059 -9.02786 -8.56067 -7.93296 -7.01206 -5.80703 -3.20008 0.72443 1.82509 2.40109 2.76629 3.31037 3.36833 3.37423 3.39073 3.71161 4.35141 4.43076 4.47041 4.71556 4.86027 4.95175 5.01219 5.07522 5.12002 5.14953 5.29987 5.45757 5.59667 5.61379 5.64792 5.70120 5.83983 5.95304 6.00503 6.04584 6.06301 6.10553 6.22571 6.24211 6.37341 6.40344 6.44168 6.56648 6.68681 6.76987 6.90086 6.97511 7.04072 7.25492 7.41600 7.72961 7.83238 7.98948 8.10778 8.44645 9.01139 9.64318 10.45418 11.28279 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.017041 B = 0.003009 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.697523 B = 9303.076228 C = 9898.994126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.212 4.212 3 C -0.022 4.022 4 C -0.232 4.232 5 C 0.140 3.860 6 N -0.476 5.476 7 C 0.068 3.932 8 C 0.498 3.502 9 O -0.540 6.540 10 N -0.699 5.699 11 C 0.129 3.871 12 H 0.080 0.920 13 C -0.141 4.141 14 C 0.154 3.846 15 H 0.154 0.846 16 C -0.139 4.139 17 C -0.128 4.128 18 C 0.125 3.875 19 H 0.089 0.911 20 N -0.591 5.591 21 C -0.215 4.215 22 H 0.079 0.921 23 C -0.010 4.010 24 N -0.920 5.920 25 Si 0.915 3.085 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.282 1.282 29 C 0.523 3.477 30 O -0.548 6.548 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.132 0.868 35 H 0.144 0.856 36 H 0.160 0.840 37 H 0.128 0.872 38 H 0.121 0.879 39 H 0.405 0.595 40 H 0.058 0.942 41 H 0.053 0.947 42 H 0.055 0.945 43 H 0.048 0.952 44 H 0.052 0.948 45 H 0.058 0.942 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.432 13.032 -5.139 17.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.216 4.216 3 C -0.044 4.044 4 C -0.255 4.255 5 C 0.013 3.987 6 N -0.186 5.186 7 C -0.057 4.057 8 C 0.282 3.718 9 O -0.418 6.418 10 N -0.349 5.349 11 C 0.023 3.977 12 H 0.098 0.902 13 C -0.182 4.182 14 C 0.047 3.953 15 H 0.170 0.830 16 C -0.179 4.179 17 C -0.167 4.167 18 C 0.017 3.983 19 H 0.107 0.893 20 N -0.312 5.312 21 C -0.343 4.343 22 H 0.096 0.904 23 C -0.205 4.205 24 N -0.567 5.567 25 Si 0.746 3.254 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.208 1.208 29 C 0.324 3.676 30 O -0.430 6.430 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.150 0.850 35 H 0.162 0.838 36 H 0.177 0.823 37 H 0.146 0.854 38 H 0.139 0.861 39 H 0.239 0.761 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.076 0.924 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.801 12.641 -4.636 17.261 hybrid contribution 0.825 -0.700 -0.894 1.403 sum -9.976 11.941 -5.530 16.513 Atomic orbital electron populations 1.20383 0.89191 1.01810 1.02779 1.20761 0.97779 0.91975 1.11063 1.21320 0.93913 0.97876 0.91291 1.20565 0.94610 0.97169 1.13181 1.21924 0.98508 0.84786 0.93458 1.44998 1.07981 1.06571 1.59004 1.21859 0.99385 0.87215 0.97271 1.20514 0.78587 0.82094 0.90609 1.90712 1.51507 1.53964 1.45582 1.45926 1.55980 1.22669 1.10301 1.22691 0.97318 0.96842 0.80873 0.90224 1.23433 0.95598 0.99603 0.99516 1.23766 1.00592 0.85888 0.85041 0.82972 1.23067 0.96203 0.99569 0.99030 1.22870 0.97277 1.00077 0.96524 1.23188 0.88640 0.91890 0.94622 0.89337 1.46555 0.98692 1.49618 1.36302 1.19016 0.89227 1.18368 1.07695 0.90361 1.24701 0.95995 1.00282 0.99566 1.69456 1.06077 1.42298 1.38899 0.86065 0.79184 0.79552 0.80614 1.21714 1.21696 1.20778 1.16915 0.80408 0.91190 0.79042 1.90940 1.66481 1.32805 1.52754 0.91709 0.91468 0.91357 0.85023 0.83790 0.82252 0.85413 0.86068 0.76065 0.92284 0.92818 0.92596 0.93327 0.92982 0.92368 0.93515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 9.64 36.00 0.35 -0.54 16 2 C -0.21 -2.63 5.90 -104.42 -0.62 -3.25 16 3 C -0.02 -0.21 9.72 -39.51 -0.38 -0.60 16 4 C -0.23 -2.04 10.01 -39.88 -0.40 -2.43 16 5 C 0.14 1.41 10.28 -16.85 -0.17 1.24 16 6 N -0.48 -6.20 2.07 -121.06 -0.25 -6.45 16 7 C 0.07 0.84 5.81 -5.19 -0.03 0.81 16 8 C 0.50 8.10 7.89 -10.98 -0.09 8.02 16 9 O -0.54 -10.76 16.08 5.56 0.09 -10.68 16 10 N -0.70 -11.53 5.07 -51.36 -0.26 -11.79 16 11 C 0.13 2.37 2.80 -65.40 -0.18 2.19 16 12 H 0.08 1.53 7.23 -51.93 -0.38 1.15 16 13 C -0.14 -2.79 6.23 -24.23 -0.15 -2.94 16 14 C 0.15 3.40 4.72 -62.79 -0.30 3.10 16 15 H 0.15 3.87 5.52 -51.93 -0.29 3.58 16 16 C -0.14 -2.72 6.44 -24.24 -0.16 -2.88 16 17 C -0.13 -2.32 6.44 -24.24 -0.16 -2.47 16 18 C 0.13 2.41 5.06 -62.77 -0.32 2.09 16 19 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 20 N -0.59 -13.56 2.99 -145.77 -0.44 -14.00 16 21 C -0.22 -5.45 10.59 -15.06 -0.16 -5.61 16 22 H 0.08 1.92 7.83 -52.48 -0.41 1.50 16 23 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 24 N -0.92 -25.03 10.47 55.49 0.58 -24.45 16 25 Si 0.92 20.81 29.55 -169.99 -5.02 15.78 16 26 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 28 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 29 C 0.52 8.02 7.39 -15.45 -0.11 7.91 16 30 O -0.55 -10.19 16.09 4.86 0.08 -10.11 16 31 H 0.06 0.49 7.89 -51.93 -0.41 0.08 16 32 H 0.07 0.71 8.14 -51.92 -0.42 0.28 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.13 0.85 7.95 -52.48 -0.42 0.43 16 35 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 36 H 0.16 1.14 8.04 -52.48 -0.42 0.72 16 37 H 0.13 1.54 7.39 -51.93 -0.38 1.16 16 38 H 0.12 1.04 8.01 -51.93 -0.42 0.63 16 39 H 0.40 6.26 8.66 -40.82 -0.35 5.90 16 40 H 0.06 1.23 7.98 -51.93 -0.41 0.82 16 41 H 0.05 1.00 7.82 -51.93 -0.41 0.60 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 43 H 0.05 0.85 7.82 -51.93 -0.41 0.45 16 44 H 0.05 0.85 7.82 -51.93 -0.41 0.44 16 45 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 46 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 375.10 15.07 5.65 5.65 Total: -1.00 -33.35 375.10 -9.32 -42.67 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -6.78 Total: 9.07 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: -2.97 Total: 4.30 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: -0.37 Total: -56.68 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: 0.17 Total: -20.79 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.35 -9.32 -42.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097067135.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.959 kcal (2) G-P(sol) polarization free energy of solvation -33.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds