Wall clock time and date at job start Tue Mar 31 2020 17:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.36404 * 120.34951 * 2 1 4 4 C 1.40195 * 119.26858 * 179.97438 * 3 2 1 5 5 C 1.35340 * 119.94737 * 0.02562 * 4 3 2 6 6 N 1.35761 * 120.70516 * 359.97438 * 5 4 3 7 7 C 1.46500 * 119.62853 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.46823 * 90.00149 * 7 6 5 9 9 O 1.21282 * 119.99937 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99792 * 180.02562 * 8 7 6 11 11 C 1.46497 * 119.99845 * 180.02562 * 10 8 7 12 12 H 1.09004 * 110.56332 * 32.10280 * 11 10 8 13 13 C 1.54852 * 110.62915 * 269.02602 * 11 10 8 14 14 C 1.55847 * 103.44696 * 241.51122 * 13 11 10 15 15 H 1.08997 * 116.12428 * 159.14277 * 14 13 11 16 16 C 1.55837 * 105.06326 * 288.17353 * 14 13 11 17 17 C 1.54849 * 103.44699 * 71.82332 * 16 14 13 18 18 C 1.55842 * 103.44649 * 0.02562 * 17 16 14 19 19 H 1.08997 * 116.13209 * 159.15158 * 18 17 16 20 20 N 1.50231 * 101.05042 * 32.93196 * 18 17 16 21 21 C 1.36943 * 130.83524 * 126.05651 * 20 18 17 22 22 H 1.08007 * 119.99980 * 359.97438 * 21 20 18 23 23 C 1.38810 * 119.99954 * 180.02562 * 21 20 18 24 24 N 1.31618 * 120.00378 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00018 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47016 * 89.99620 * 25 23 21 27 27 H 1.48499 * 109.47202 * 209.99771 * 25 23 21 28 28 H 1.48503 * 109.47178 * 329.99980 * 25 23 21 29 29 C 1.34660 * 120.74953 * 0.02562 * 6 5 4 30 30 O 1.22067 * 119.98897 * 179.97438 * 29 6 5 31 31 H 1.09005 * 109.47416 * 0.02562 * 1 2 3 32 32 H 1.09007 * 109.46733 * 120.00045 * 1 2 3 33 33 H 1.08997 * 109.47225 * 239.99965 * 1 2 3 34 34 H 1.08007 * 120.36418 * 0.24943 * 3 2 1 35 35 H 1.08000 * 120.02663 * 179.97438 * 4 3 2 36 36 H 1.08005 * 119.64808 * 179.97438 * 5 4 3 37 37 H 1.09000 * 109.47549 * 210.00205 * 7 6 5 38 38 H 1.08996 * 109.46916 * 330.00778 * 7 6 5 39 39 H 0.96997 * 120.00306 * 0.02562 * 10 8 7 40 40 H 1.09000 * 110.62129 * 359.97438 * 13 11 10 41 41 H 1.08994 * 110.62794 * 123.01827 * 13 11 10 42 42 H 1.09001 * 110.62501 * 190.31712 * 16 14 13 43 43 H 1.08999 * 110.62724 * 313.17729 * 16 14 13 44 44 H 1.09000 * 110.62948 * 241.51078 * 17 16 14 45 45 H 1.09008 * 110.62562 * 118.48966 * 17 16 14 46 46 H 0.96994 * 120.00459 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1962 1.1771 0.0000 4 6 3.5979 1.1507 0.0005 5 6 4.2512 -0.0346 0.0005 6 7 3.5637 -1.2052 0.0005 7 6 4.2949 -2.4747 0.0000 8 6 4.5461 -2.9102 1.4206 9 8 4.1526 -2.2277 2.3427 10 7 5.2080 -4.0582 1.6664 11 6 5.4518 -4.4819 3.0474 12 1 4.6384 -4.1577 3.6966 13 6 6.8094 -3.9359 3.5541 14 6 7.6248 -5.2265 3.8674 15 1 8.7084 -5.1132 3.9014 16 6 6.9699 -5.8176 5.1520 17 6 5.6123 -6.3636 4.6455 18 6 5.6321 -6.0287 3.1236 19 1 4.9595 -6.6121 2.4948 20 7 7.0968 -6.1636 2.8181 21 6 7.7495 -6.9102 1.8737 22 1 7.1868 -7.5346 1.1954 23 6 9.1343 -6.8653 1.7888 24 7 9.8200 -6.1048 2.6157 25 14 10.0246 -7.8843 0.5010 26 1 10.1705 -7.0895 -0.7450 27 1 11.3686 -8.2595 1.0090 28 1 9.2425 -9.1138 0.2150 29 6 2.2171 -1.2127 0.0000 30 8 1.6129 -2.2734 -0.0005 31 1 -0.3634 1.0277 -0.0005 32 1 -0.3633 -0.5139 -0.8901 33 1 -0.3633 -0.5138 0.8899 34 1 1.6678 2.1191 0.0041 35 1 4.1558 2.0754 0.0001 36 1 5.3312 -0.0493 0.0005 37 1 3.7049 -3.2336 -0.5138 38 1 5.2473 -2.3451 -0.5141 39 1 5.5231 -4.6039 0.9289 40 1 7.3015 -3.3503 2.7776 41 1 6.6711 -3.3405 4.4565 42 1 7.5806 -6.6239 5.5582 43 1 6.8184 -5.0385 5.8991 44 1 4.7850 -5.8547 5.1402 45 1 5.5497 -7.4408 4.8004 46 1 10.7876 -6.0732 2.5561 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097067135.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:18 Heat of formation + Delta-G solvation = -9.361011 kcal Electronic energy + Delta-G solvation = -28854.067155 eV Core-core repulsion = 24937.663548 eV Total energy + Delta-G solvation = -3916.403606 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.54199 -41.21783 -39.81622 -37.94712 -36.11603 -35.36536 -34.43238 -32.23988 -30.98037 -30.74466 -30.00525 -28.55316 -28.06869 -26.11992 -24.32752 -23.39862 -22.84040 -21.55991 -21.39860 -20.34734 -18.86207 -18.57095 -18.51793 -18.30637 -17.39631 -16.88612 -16.72663 -16.44135 -16.15806 -15.71815 -15.44414 -15.32588 -14.95469 -14.69651 -14.48613 -13.83977 -13.83529 -13.69377 -13.60965 -13.23969 -13.14559 -12.98433 -12.91468 -12.84079 -12.76170 -12.69960 -12.42865 -12.13531 -11.97243 -11.92353 -11.72915 -11.44236 -11.12676 -11.03077 -10.95320 -10.87388 -10.56573 -10.02799 -8.87615 -8.83440 -7.75329 -5.15368 -0.09470 0.95209 1.46753 1.49050 1.50469 1.52312 1.59446 2.22473 2.50885 2.72689 3.37383 3.43184 3.58683 3.66825 3.77043 3.97360 3.98852 4.06339 4.12272 4.22552 4.24175 4.25061 4.38677 4.43418 4.46435 4.59564 4.66982 4.78085 4.79663 4.80507 4.87873 4.92921 5.05603 5.14365 5.16764 5.19314 5.27277 5.35268 5.43297 5.49966 5.56764 5.66323 5.68518 5.89291 6.07084 6.26878 6.51346 6.97434 7.06646 7.14722 7.72722 8.58373 9.31955 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.017041 B = 0.003009 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.697523 B = 9303.076228 C = 9898.994126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.251 4.251 3 C -0.001 4.001 4 C -0.223 4.223 5 C 0.122 3.878 6 N -0.480 5.480 7 C 0.073 3.927 8 C 0.499 3.501 9 O -0.578 6.578 10 N -0.697 5.697 11 C 0.140 3.860 12 H 0.078 0.922 13 C -0.128 4.128 14 C 0.141 3.859 15 H 0.119 0.881 16 C -0.133 4.133 17 C -0.121 4.121 18 C 0.126 3.874 19 H 0.099 0.901 20 N -0.608 5.608 21 C -0.215 4.215 22 H 0.084 0.916 23 C -0.063 4.063 24 N -0.947 5.947 25 Si 0.974 3.026 26 H -0.287 1.287 27 H -0.302 1.302 28 H -0.275 1.275 29 C 0.500 3.500 30 O -0.603 6.603 31 H 0.097 0.903 32 H 0.057 0.943 33 H 0.046 0.954 34 H 0.170 0.830 35 H 0.183 0.817 36 H 0.190 0.810 37 H 0.127 0.873 38 H 0.163 0.837 39 H 0.410 0.590 40 H 0.043 0.957 41 H 0.064 0.936 42 H 0.038 0.962 43 H 0.069 0.931 44 H 0.076 0.924 45 H 0.059 0.941 46 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.914 14.966 -5.973 19.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.255 4.255 3 C -0.023 4.023 4 C -0.245 4.245 5 C -0.003 4.003 6 N -0.188 5.188 7 C -0.052 4.052 8 C 0.285 3.715 9 O -0.458 6.458 10 N -0.347 5.347 11 C 0.033 3.967 12 H 0.096 0.904 13 C -0.169 4.169 14 C 0.035 3.965 15 H 0.136 0.864 16 C -0.172 4.172 17 C -0.160 4.160 18 C 0.018 3.982 19 H 0.117 0.883 20 N -0.329 5.329 21 C -0.344 4.344 22 H 0.102 0.898 23 C -0.256 4.256 24 N -0.596 5.596 25 Si 0.804 3.196 26 H -0.214 1.214 27 H -0.229 1.229 28 H -0.200 1.200 29 C 0.305 3.695 30 O -0.491 6.491 31 H 0.116 0.884 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.187 0.813 35 H 0.200 0.800 36 H 0.207 0.793 37 H 0.145 0.855 38 H 0.181 0.819 39 H 0.246 0.754 40 H 0.061 0.939 41 H 0.082 0.918 42 H 0.057 0.943 43 H 0.088 0.912 44 H 0.095 0.905 45 H 0.077 0.923 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -11.290 14.600 -5.487 19.255 hybrid contribution 0.999 -1.190 -0.604 1.667 sum -10.291 13.410 -6.092 17.968 Atomic orbital electron populations 1.20371 0.88624 1.03432 1.01334 1.20954 0.98592 0.92034 1.13918 1.21806 0.94497 0.98221 0.87769 1.21139 0.94586 0.98180 1.10632 1.22625 1.00089 0.84231 0.93377 1.45064 1.07595 1.07632 1.58523 1.21932 1.01241 0.87457 0.94600 1.21135 0.77266 0.81227 0.91918 1.90686 1.52902 1.55018 1.47222 1.45872 1.56064 1.23047 1.09714 1.22432 0.96244 0.95993 0.81991 0.90445 1.23267 0.95749 0.98350 0.99512 1.23607 0.99350 0.87207 0.86354 0.86374 1.22976 0.96458 0.99541 0.98263 1.22831 0.97142 1.00413 0.95646 1.23358 0.86795 0.92519 0.95513 0.88293 1.46706 1.00420 1.49597 1.36189 1.19340 0.89539 1.17819 1.07715 0.89797 1.25387 0.96864 1.01804 1.01554 1.69697 1.05539 1.43907 1.40478 0.85137 0.77444 0.78480 0.78566 1.21381 1.22949 1.19998 1.17506 0.81252 0.91640 0.79133 1.90886 1.67637 1.34490 1.56048 0.88381 0.92426 0.93483 0.81292 0.79982 0.79294 0.85482 0.81939 0.75394 0.93859 0.91769 0.94265 0.91193 0.90503 0.92254 0.94434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.68 9.64 71.23 0.69 -0.99 16 2 C -0.25 -6.02 5.90 -19.73 -0.12 -6.14 16 3 C 0.00 -0.02 9.72 22.32 0.22 0.19 16 4 C -0.22 -3.01 10.01 22.08 0.22 -2.79 16 5 C 0.12 2.10 10.28 83.42 0.86 2.96 16 6 N -0.48 -11.91 2.07 -655.06 -1.36 -13.27 16 7 C 0.07 1.70 5.81 85.63 0.50 2.20 16 8 C 0.50 15.82 7.89 87.66 0.69 16.51 16 9 O -0.58 -22.77 16.08 -3.04 -0.05 -22.82 16 10 N -0.70 -22.37 5.07 -434.81 -2.21 -24.58 16 11 C 0.14 5.02 2.80 46.63 0.13 5.15 16 12 H 0.08 2.86 7.23 -2.38 -0.02 2.85 16 13 C -0.13 -5.01 6.23 32.21 0.20 -4.81 16 14 C 0.14 6.28 4.72 46.22 0.22 6.50 16 15 H 0.12 6.20 5.52 -2.39 -0.01 6.19 16 16 C -0.13 -5.10 6.44 32.21 0.21 -4.89 16 17 C -0.12 -4.18 6.44 32.21 0.21 -3.97 16 18 C 0.13 4.68 5.06 46.25 0.23 4.91 16 19 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16 20 N -0.61 -27.75 2.99 -615.08 -1.84 -29.59 16 21 C -0.22 -10.87 10.59 84.03 0.89 -9.98 16 22 H 0.08 4.04 7.83 -2.91 -0.02 4.01 16 23 C -0.06 -3.32 5.50 84.86 0.47 -2.86 16 24 N -0.95 -52.73 10.47 21.65 0.23 -52.51 16 25 Si 0.97 43.06 29.55 68.60 2.03 45.08 16 26 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 27 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 28 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 29 C 0.50 15.46 7.39 84.82 0.63 16.09 16 30 O -0.60 -23.52 16.09 -5.53 -0.09 -23.61 16 31 H 0.10 1.27 7.89 -2.38 -0.02 1.25 16 32 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.17 1.32 7.95 -2.91 -0.02 1.30 16 35 H 0.18 1.07 8.06 -2.91 -0.02 1.05 16 36 H 0.19 1.97 8.04 -2.91 -0.02 1.95 16 37 H 0.13 3.04 7.39 -2.39 -0.02 3.02 16 38 H 0.16 2.36 8.01 -2.39 -0.02 2.34 16 39 H 0.41 12.29 8.66 -92.71 -0.80 11.49 16 40 H 0.04 1.80 7.98 -2.39 -0.02 1.78 16 41 H 0.06 2.34 7.82 -2.39 -0.02 2.32 16 42 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.07 2.35 7.82 -2.39 -0.02 2.33 16 44 H 0.08 2.30 7.82 -2.39 -0.02 2.28 16 45 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 46 H 0.25 13.52 8.31 -92.71 -0.77 12.75 16 Total: -1.00 -75.80 375.10 3.15 -72.65 By element: Atomic # 1 Polarization: 30.35 SS G_CDS: 0.20 Total: 30.54 kcal Atomic # 6 Polarization: 11.86 SS G_CDS: 6.24 Total: 18.10 kcal Atomic # 7 Polarization: -114.77 SS G_CDS: -5.17 Total: -119.95 kcal Atomic # 8 Polarization: -46.29 SS G_CDS: -0.14 Total: -46.43 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Total: -75.80 3.15 -72.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097067135.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.288 kcal (2) G-P(sol) polarization free energy of solvation -75.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds