Wall clock time and date at job start Tue Mar 31 2020 17:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35654 * 116.99687 * 2 1 4 4 C 1.39342 * 120.54232 * 0.02562 * 3 2 1 5 5 C 1.38301 * 118.43865 * 179.97438 * 4 3 2 6 6 C 1.50701 * 120.27540 * 180.02562 * 5 4 3 7 7 C 1.38768 * 119.44675 * 0.02562 * 5 4 3 8 8 N 1.31380 * 121.06514 * 359.71519 * 7 5 4 9 9 C 1.32864 * 121.69425 * 0.57256 * 8 7 5 10 10 C 1.47829 * 119.78096 * 179.70629 * 9 8 7 11 11 O 1.21554 * 119.99443 * 179.73041 * 10 9 8 12 12 N 1.34774 * 119.99955 * 359.73262 * 10 9 8 13 13 C 1.46501 * 119.99931 * 180.02562 * 12 10 9 14 14 H 1.08999 * 110.68514 * 32.00272 * 13 12 10 15 15 C 1.55485 * 110.75461 * 268.95749 * 13 12 10 16 16 C 1.55848 * 103.32500 * 241.51323 * 15 13 12 17 17 H 1.08994 * 116.13106 * 159.23070 * 16 15 13 18 18 C 1.55393 * 105.04292 * 288.03985 * 16 15 13 19 19 C 1.54854 * 103.48459 * 72.07485 * 18 16 15 20 20 C 1.55836 * 110.62873 * 154.99767 * 13 12 10 21 21 H 1.09000 * 116.12868 * 319.33736 * 20 13 12 22 22 N 1.50241 * 101.05147 * 85.54947 * 20 13 12 23 23 C 1.36932 * 130.83906 * 233.93071 * 22 20 13 24 24 H 1.08003 * 119.99911 * 10.29907 * 23 22 20 25 25 C 1.38810 * 120.00020 * 190.30323 * 23 22 20 26 26 N 1.31620 * 119.99940 * 201.17946 * 25 23 22 27 27 Si 1.86799 * 120.00063 * 21.17887 * 25 23 22 28 28 H 1.48503 * 109.47110 * 269.99962 * 27 25 23 29 29 H 1.48499 * 109.47103 * 150.00158 * 27 25 23 30 30 H 1.48495 * 109.47264 * 30.00184 * 27 25 23 31 31 H 1.09000 * 109.46643 * 60.00403 * 1 2 3 32 32 H 1.08998 * 109.46795 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46684 * 300.00434 * 1 2 3 34 34 H 1.08001 * 120.77880 * 359.97438 * 4 3 2 35 35 H 1.09002 * 109.46678 * 90.00614 * 6 5 4 36 36 H 1.09004 * 109.46961 * 209.99823 * 6 5 4 37 37 H 1.08992 * 109.47486 * 330.00067 * 6 5 4 38 38 H 1.07995 * 119.46764 * 180.02562 * 7 5 4 39 39 H 0.96996 * 120.00403 * 359.97438 * 12 10 9 40 40 H 1.08999 * 110.61442 * 123.09663 * 15 13 12 41 41 H 1.09003 * 110.75848 * 359.97438 * 15 13 12 42 42 H 1.08999 * 110.71389 * 313.51609 * 18 16 15 43 43 H 1.09000 * 110.49387 * 190.52388 * 18 16 15 44 44 H 1.08996 * 110.62142 * 241.38217 * 19 18 16 45 45 H 1.08998 * 110.62242 * 118.36420 * 19 18 16 46 46 H 0.96996 * 120.00168 * 354.93643 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2970 2.3844 0.0005 5 6 1.9696 3.5929 0.0011 6 6 1.2019 4.8897 0.0022 7 6 3.3573 3.6012 0.0005 8 7 4.0420 2.4800 0.0051 9 6 3.4410 1.2950 -0.0009 10 6 4.2532 0.0598 -0.0020 11 8 3.7074 -1.0263 -0.0025 12 7 5.5987 0.1381 -0.0024 13 6 6.4036 -1.0860 -0.0040 14 1 5.8924 -1.8822 -0.5451 15 6 6.7289 -1.5335 1.4491 16 6 8.2852 -1.4721 1.5039 17 1 8.7281 -1.4021 2.4974 18 6 8.7668 -2.6721 0.6422 19 6 8.4459 -2.2283 -0.8063 20 6 7.8094 -0.8179 -0.6206 21 1 7.8334 -0.1719 -1.4982 22 7 8.5605 -0.3189 0.5811 23 6 9.2798 0.8303 0.7738 24 1 9.2350 1.6243 0.0431 25 6 10.0664 0.9747 1.9084 26 7 10.4170 2.1755 2.3176 27 14 10.6274 -0.5353 2.8543 28 1 9.6229 -0.8683 3.8960 29 1 11.9359 -0.2574 3.4992 30 1 10.7696 -1.6804 1.9196 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 0.2174 2.3527 0.0005 35 1 1.0174 5.2017 1.0302 36 1 1.7825 5.6561 -0.5113 37 1 0.2508 4.7494 -0.5112 38 1 3.8828 4.5447 0.0013 39 1 6.0342 1.0048 -0.0023 40 1 6.3783 -2.5504 1.6251 41 1 6.2921 -0.8448 2.1724 42 1 8.2148 -3.5765 0.8979 43 1 9.8384 -2.8266 0.7680 44 1 7.7348 -2.9127 -1.2688 45 1 9.3585 -2.1628 -1.3988 46 1 10.1884 2.9547 1.7871 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097238151.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:20 Heat of formation + Delta-G solvation = 18.001250 kcal Electronic energy + Delta-G solvation = -29056.211162 eV Core-core repulsion = 25140.994072 eV Total energy + Delta-G solvation = -3915.217090 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.04680 -39.74136 -38.41791 -38.17266 -34.06782 -33.59757 -32.55524 -31.12387 -29.44228 -29.14581 -28.73897 -28.09016 -27.05880 -23.84286 -23.46464 -22.78156 -21.61069 -20.11116 -20.00905 -19.13409 -18.02397 -17.54696 -17.37915 -17.19179 -16.14764 -15.99755 -15.41727 -15.03882 -14.63982 -14.33139 -14.25778 -13.96657 -13.88338 -13.56735 -13.36920 -13.22119 -12.95294 -12.81441 -12.59997 -12.45910 -11.76439 -11.66335 -11.66163 -11.53462 -11.40942 -11.24594 -10.82254 -10.60352 -10.43412 -10.06299 -9.86941 -9.74731 -9.67151 -9.41625 -9.28894 -9.16560 -8.67470 -8.57273 -8.32137 -7.16142 -6.25130 -3.12366 0.56354 1.07510 2.92726 2.96674 3.41529 3.48896 3.54103 3.70420 3.87832 4.20528 4.33174 4.53944 4.63973 4.68558 4.73544 4.78127 4.80128 4.86788 5.17898 5.20471 5.24023 5.25771 5.32905 5.42503 5.50481 5.59756 5.68819 5.73879 5.77729 5.86252 5.91896 5.99486 6.04165 6.14188 6.20397 6.27874 6.35378 6.50571 6.60452 6.71435 6.86035 6.95938 7.01805 7.14395 7.46482 7.66067 8.11824 8.32587 8.66480 9.04509 9.58969 10.38568 11.24111 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.015153 B = 0.003631 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.378071 B = 7708.995472 C = 8938.569367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.271 6.271 3 C 0.138 3.862 4 C -0.182 4.182 5 C -0.078 4.078 6 C -0.114 4.114 7 C 0.060 3.940 8 N -0.410 5.410 9 C 0.043 3.957 10 C 0.567 3.433 11 O -0.530 6.530 12 N -0.689 5.689 13 C 0.132 3.868 14 H 0.087 0.913 15 C -0.136 4.136 16 C 0.118 3.882 17 H 0.094 0.906 18 C -0.140 4.140 19 C -0.128 4.128 20 C 0.130 3.870 21 H 0.094 0.906 22 N -0.603 5.603 23 C -0.308 4.308 24 H 0.078 0.922 25 C -0.022 4.022 26 N -0.928 5.928 27 Si 1.058 2.942 28 H -0.296 1.296 29 H -0.303 1.303 30 H -0.275 1.275 31 H 0.055 0.945 32 H 0.104 0.896 33 H 0.055 0.945 34 H 0.144 0.856 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.164 0.836 39 H 0.414 0.586 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.058 0.942 43 H 0.066 0.934 44 H 0.057 0.943 45 H 0.062 0.938 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.646 -0.248 -6.248 21.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.181 6.181 3 C 0.087 3.913 4 C -0.208 4.208 5 C -0.080 4.080 6 C -0.171 4.171 7 C -0.102 4.102 8 N -0.120 5.120 9 C -0.097 4.097 10 C 0.351 3.649 11 O -0.407 6.407 12 N -0.339 5.339 13 C 0.025 3.975 14 H 0.104 0.896 15 C -0.177 4.177 16 C 0.012 3.988 17 H 0.111 0.889 18 C -0.179 4.179 19 C -0.168 4.168 20 C 0.022 3.978 21 H 0.112 0.888 22 N -0.326 5.326 23 C -0.435 4.435 24 H 0.096 0.904 25 C -0.222 4.222 26 N -0.569 5.569 27 Si 0.893 3.107 28 H -0.226 1.226 29 H -0.231 1.231 30 H -0.202 1.202 31 H 0.073 0.927 32 H 0.123 0.877 33 H 0.074 0.926 34 H 0.162 0.838 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.182 0.818 39 H 0.251 0.749 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.084 0.916 44 H 0.076 0.924 45 H 0.081 0.919 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.058 -1.562 -4.885 19.736 hybrid contribution -1.821 1.170 -1.250 2.500 sum -20.879 -0.393 -6.135 21.765 Atomic orbital electron populations 1.23197 0.78858 1.04536 1.01040 1.86444 1.20623 1.24524 1.86469 1.20044 0.92290 0.85563 0.93356 1.21574 1.00725 0.91289 1.07200 1.20992 0.95263 0.95723 0.96048 1.20806 0.99766 0.93429 1.03088 1.22658 0.90487 0.96586 1.00434 1.67698 1.39617 0.97355 1.07362 1.20837 0.88550 0.93120 1.07145 1.17602 0.82599 0.87021 0.77646 1.90783 1.71888 1.27484 1.50503 1.45827 1.04816 1.11206 1.72011 1.22682 0.91820 0.85974 0.96977 0.89552 1.23438 0.97678 1.00077 0.96476 1.23117 0.93134 0.87933 0.94650 0.88902 1.23116 1.01171 0.97658 0.96002 1.22893 1.00119 0.97080 0.96676 1.23143 0.89731 0.93572 0.91395 0.88754 1.46906 1.58964 1.19369 1.07358 1.20053 1.23136 0.90867 1.09413 0.90379 1.25715 0.97176 1.02650 0.96656 1.70913 1.52021 0.97455 1.36558 0.83911 0.75624 0.75634 0.75525 1.22580 1.23103 1.20153 0.92655 0.87718 0.92634 0.83847 0.90250 0.90486 0.91156 0.81846 0.74935 0.91830 0.91725 0.92292 0.91557 0.92406 0.91891 0.92853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.83 101.05 0.99 1.15 16 2 O -0.27 -3.84 8.56 -40.61 -0.35 -4.18 16 3 C 0.14 1.96 6.71 -38.56 -0.26 1.70 16 4 C -0.18 -1.90 8.80 -39.15 -0.34 -2.24 16 5 C -0.08 -0.77 5.90 -104.40 -0.62 -1.38 16 6 C -0.11 -0.68 10.03 36.01 0.36 -0.32 16 7 C 0.06 0.72 10.85 -17.55 -0.19 0.53 16 8 N -0.41 -6.46 9.54 -9.71 -0.09 -6.56 16 9 C 0.04 0.71 6.76 -82.88 -0.56 0.15 16 10 C 0.57 10.77 7.80 -12.34 -0.10 10.67 16 11 O -0.53 -11.01 14.79 -16.63 -0.25 -11.25 16 12 N -0.69 -13.13 5.08 -52.02 -0.26 -13.40 16 13 C 0.13 2.49 2.82 -65.10 -0.18 2.31 16 14 H 0.09 1.58 7.23 -51.93 -0.38 1.21 16 15 C -0.14 -2.69 6.26 -23.89 -0.15 -2.84 16 16 C 0.12 2.55 3.60 -63.04 -0.23 2.33 16 17 H 0.09 2.15 3.42 -51.93 -0.18 1.97 16 18 C -0.14 -2.60 6.22 -24.48 -0.15 -2.75 16 19 C -0.13 -2.23 6.44 -24.23 -0.16 -2.38 16 20 C 0.13 2.56 5.06 -62.80 -0.32 2.24 16 21 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 22 N -0.60 -14.31 2.83 -146.08 -0.41 -14.72 16 23 C -0.31 -8.58 10.81 -15.06 -0.16 -8.74 16 24 H 0.08 2.29 8.06 -52.48 -0.42 1.87 16 25 C -0.02 -0.65 5.49 -17.43 -0.10 -0.75 16 26 N -0.93 -29.05 13.70 55.49 0.76 -28.29 16 27 Si 1.06 26.58 25.01 -169.99 -4.25 22.33 16 28 H -0.30 -7.20 6.60 56.52 0.37 -6.83 16 29 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 30 H -0.28 -6.33 4.94 56.52 0.28 -6.06 16 31 H 0.05 0.35 7.70 -51.93 -0.40 -0.05 16 32 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.37 7.70 -51.93 -0.40 -0.03 16 34 H 0.14 1.03 6.46 -52.49 -0.34 0.69 16 35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.39 8.09 -51.93 -0.42 -0.03 16 37 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 38 H 0.16 1.56 8.06 -52.49 -0.42 1.14 16 39 H 0.41 8.23 7.98 -40.82 -0.33 7.90 16 40 H 0.06 1.12 7.80 -51.93 -0.41 0.71 16 41 H 0.06 1.37 8.00 -51.93 -0.42 0.96 16 42 H 0.06 0.94 7.80 -51.93 -0.41 0.53 16 43 H 0.07 1.28 6.48 -51.93 -0.34 0.94 16 44 H 0.06 0.87 7.82 -51.93 -0.41 0.46 16 45 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.26 8.08 8.73 -40.82 -0.36 7.73 16 LS Contribution 363.52 15.07 5.48 5.48 Total: -1.00 -34.73 363.52 -8.20 -42.93 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -6.67 Total: 7.99 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -2.16 Total: -0.32 kcal Atomic # 7 Polarization: -62.95 SS G_CDS: -0.01 Total: -62.96 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -0.59 Total: -15.44 kcal Atomic # 14 Polarization: 26.58 SS G_CDS: -4.25 Total: 22.33 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.73 -8.20 -42.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097238151.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.930 kcal (2) G-P(sol) polarization free energy of solvation -34.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds