Wall clock time and date at job start Tue Mar 31 2020 17:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35654 * 116.99687 * 2 1 4 4 C 1.39342 * 120.54232 * 0.02562 * 3 2 1 5 5 C 1.38301 * 118.43865 * 179.97438 * 4 3 2 6 6 C 1.50701 * 120.27540 * 180.02562 * 5 4 3 7 7 C 1.38768 * 119.44675 * 0.02562 * 5 4 3 8 8 N 1.31380 * 121.06514 * 359.71519 * 7 5 4 9 9 C 1.32864 * 121.69425 * 0.57256 * 8 7 5 10 10 C 1.47829 * 119.78096 * 179.70629 * 9 8 7 11 11 O 1.21554 * 119.99443 * 179.73041 * 10 9 8 12 12 N 1.34774 * 119.99955 * 359.73262 * 10 9 8 13 13 C 1.46501 * 119.99931 * 180.02562 * 12 10 9 14 14 H 1.08999 * 110.68514 * 32.00272 * 13 12 10 15 15 C 1.55485 * 110.75461 * 268.95749 * 13 12 10 16 16 C 1.55848 * 103.32500 * 241.51323 * 15 13 12 17 17 H 1.08994 * 116.13106 * 159.23070 * 16 15 13 18 18 C 1.55393 * 105.04292 * 288.03985 * 16 15 13 19 19 C 1.54854 * 103.48459 * 72.07485 * 18 16 15 20 20 C 1.55836 * 110.62873 * 154.99767 * 13 12 10 21 21 H 1.09000 * 116.12868 * 319.33736 * 20 13 12 22 22 N 1.50241 * 101.05147 * 85.54947 * 20 13 12 23 23 C 1.36932 * 130.83906 * 233.93071 * 22 20 13 24 24 H 1.08003 * 119.99911 * 10.29907 * 23 22 20 25 25 C 1.38810 * 120.00020 * 190.30323 * 23 22 20 26 26 N 1.31620 * 119.99940 * 201.17946 * 25 23 22 27 27 Si 1.86799 * 120.00063 * 21.17887 * 25 23 22 28 28 H 1.48503 * 109.47110 * 269.99962 * 27 25 23 29 29 H 1.48499 * 109.47103 * 150.00158 * 27 25 23 30 30 H 1.48495 * 109.47264 * 30.00184 * 27 25 23 31 31 H 1.09000 * 109.46643 * 60.00403 * 1 2 3 32 32 H 1.08998 * 109.46795 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46684 * 300.00434 * 1 2 3 34 34 H 1.08001 * 120.77880 * 359.97438 * 4 3 2 35 35 H 1.09002 * 109.46678 * 90.00614 * 6 5 4 36 36 H 1.09004 * 109.46961 * 209.99823 * 6 5 4 37 37 H 1.08992 * 109.47486 * 330.00067 * 6 5 4 38 38 H 1.07995 * 119.46764 * 180.02562 * 7 5 4 39 39 H 0.96996 * 120.00403 * 359.97438 * 12 10 9 40 40 H 1.08999 * 110.61442 * 123.09663 * 15 13 12 41 41 H 1.09003 * 110.75848 * 359.97438 * 15 13 12 42 42 H 1.08999 * 110.71389 * 313.51609 * 18 16 15 43 43 H 1.09000 * 110.49387 * 190.52388 * 18 16 15 44 44 H 1.08996 * 110.62142 * 241.38217 * 19 18 16 45 45 H 1.08998 * 110.62242 * 118.36420 * 19 18 16 46 46 H 0.96996 * 120.00168 * 354.93643 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2970 2.3844 0.0005 5 6 1.9696 3.5929 0.0011 6 6 1.2019 4.8897 0.0022 7 6 3.3573 3.6012 0.0005 8 7 4.0420 2.4800 0.0051 9 6 3.4410 1.2950 -0.0009 10 6 4.2532 0.0598 -0.0020 11 8 3.7074 -1.0263 -0.0025 12 7 5.5987 0.1381 -0.0024 13 6 6.4036 -1.0860 -0.0040 14 1 5.8924 -1.8822 -0.5451 15 6 6.7289 -1.5335 1.4491 16 6 8.2852 -1.4721 1.5039 17 1 8.7281 -1.4021 2.4974 18 6 8.7668 -2.6721 0.6422 19 6 8.4459 -2.2283 -0.8063 20 6 7.8094 -0.8179 -0.6206 21 1 7.8334 -0.1719 -1.4982 22 7 8.5605 -0.3189 0.5811 23 6 9.2798 0.8303 0.7738 24 1 9.2350 1.6243 0.0431 25 6 10.0664 0.9747 1.9084 26 7 10.4170 2.1755 2.3176 27 14 10.6274 -0.5353 2.8543 28 1 9.6229 -0.8683 3.8960 29 1 11.9359 -0.2574 3.4992 30 1 10.7696 -1.6804 1.9196 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 0.2174 2.3527 0.0005 35 1 1.0174 5.2017 1.0302 36 1 1.7825 5.6561 -0.5113 37 1 0.2508 4.7494 -0.5112 38 1 3.8828 4.5447 0.0013 39 1 6.0342 1.0048 -0.0023 40 1 6.3783 -2.5504 1.6251 41 1 6.2921 -0.8448 2.1724 42 1 8.2148 -3.5765 0.8979 43 1 9.8384 -2.8266 0.7680 44 1 7.7348 -2.9127 -1.2688 45 1 9.3585 -2.1628 -1.3988 46 1 10.1884 2.9547 1.7871 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097238151.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:20 Heat of formation + Delta-G solvation = -6.389352 kcal Electronic energy + Delta-G solvation = -29057.268818 eV Core-core repulsion = 25140.994072 eV Total energy + Delta-G solvation = -3916.274746 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.08701 -41.25781 -39.65448 -39.30694 -35.39021 -34.85503 -34.48383 -32.06993 -31.33740 -30.66479 -30.08739 -28.91362 -27.97888 -25.54111 -24.73459 -23.79315 -22.85058 -21.86384 -21.46441 -20.70538 -19.36983 -19.13633 -18.55566 -18.28814 -17.66362 -17.07351 -16.85228 -16.33082 -15.94386 -15.66427 -15.26837 -15.19858 -15.08078 -14.93200 -14.83280 -14.65284 -14.21792 -13.63535 -13.60553 -13.42730 -13.26802 -13.11407 -13.02558 -12.87538 -12.55518 -12.42863 -12.40598 -12.27969 -11.98891 -11.56844 -11.35559 -11.29562 -11.19064 -11.02287 -10.71394 -10.60045 -10.57178 -10.01740 -9.49367 -9.20335 -8.54270 -5.33187 -0.43315 0.16119 1.38900 1.53298 1.70256 1.71427 2.10365 2.21405 2.57575 2.74876 2.98980 3.18617 3.23498 3.50465 3.65794 3.82539 3.83991 3.85576 4.01217 4.06592 4.22481 4.23434 4.26048 4.33638 4.35962 4.44971 4.54355 4.58391 4.59354 4.71232 4.73861 4.77638 4.80982 4.83297 5.04746 5.10075 5.10967 5.13825 5.21466 5.33201 5.41828 5.42611 5.57560 5.64273 6.09301 6.17133 6.48419 6.78550 6.81144 7.21412 7.44997 8.29616 8.96681 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.015153 B = 0.003631 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.378071 B = 7708.995472 C = 8938.569367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.304 6.304 3 C 0.135 3.865 4 C -0.175 4.175 5 C -0.058 4.058 6 C -0.112 4.112 7 C 0.046 3.954 8 N -0.443 5.443 9 C -0.007 4.007 10 C 0.565 3.435 11 O -0.555 6.555 12 N -0.695 5.695 13 C 0.138 3.862 14 H 0.100 0.900 15 C -0.130 4.130 16 C 0.104 3.896 17 H 0.078 0.922 18 C -0.133 4.133 19 C -0.118 4.118 20 C 0.127 3.873 21 H 0.092 0.908 22 N -0.626 5.626 23 C -0.283 4.283 24 H 0.047 0.953 25 C -0.084 4.084 26 N -0.969 5.969 27 Si 1.097 2.903 28 H -0.288 1.288 29 H -0.315 1.315 30 H -0.241 1.241 31 H 0.077 0.923 32 H 0.115 0.885 33 H 0.074 0.926 34 H 0.183 0.817 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.183 0.817 39 H 0.406 0.594 40 H 0.092 0.908 41 H 0.038 0.962 42 H 0.095 0.905 43 H 0.060 0.940 44 H 0.092 0.908 45 H 0.064 0.936 46 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.648 -1.481 -7.019 24.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.215 6.215 3 C 0.084 3.916 4 C -0.200 4.200 5 C -0.060 4.060 6 C -0.169 4.169 7 C -0.117 4.117 8 N -0.154 5.154 9 C -0.144 4.144 10 C 0.351 3.649 11 O -0.434 6.434 12 N -0.344 5.344 13 C 0.032 3.968 14 H 0.118 0.882 15 C -0.170 4.170 16 C -0.002 4.002 17 H 0.095 0.905 18 C -0.172 4.172 19 C -0.157 4.157 20 C 0.020 3.980 21 H 0.110 0.890 22 N -0.350 5.350 23 C -0.411 4.411 24 H 0.065 0.935 25 C -0.276 4.276 26 N -0.614 5.614 27 Si 0.926 3.074 28 H -0.217 1.217 29 H -0.245 1.245 30 H -0.165 1.165 31 H 0.095 0.905 32 H 0.133 0.867 33 H 0.092 0.908 34 H 0.200 0.800 35 H 0.112 0.888 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.200 0.800 39 H 0.241 0.759 40 H 0.110 0.890 41 H 0.057 0.943 42 H 0.113 0.887 43 H 0.079 0.921 44 H 0.111 0.889 45 H 0.083 0.917 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -22.111 -2.860 -5.700 23.012 hybrid contribution -1.123 1.692 -1.102 2.310 sum -23.234 -1.168 -6.801 24.237 Atomic orbital electron populations 1.23552 0.76037 1.06026 1.02970 1.86387 1.23673 1.25076 1.86355 1.20161 0.91696 0.86878 0.92886 1.21997 1.02407 0.89936 1.05705 1.21451 0.94465 0.97473 0.92604 1.20946 1.00291 0.91227 1.04406 1.23180 0.92099 0.96202 1.00234 1.67569 1.41181 0.98122 1.08567 1.20531 0.89679 0.92475 1.11671 1.18025 0.82419 0.87895 0.76545 1.90731 1.72205 1.28623 1.51849 1.45885 1.05256 1.10793 1.72474 1.22643 0.91326 0.86357 0.96465 0.88214 1.23398 0.96234 1.01073 0.96288 1.23335 0.94268 0.88373 0.94185 0.90452 1.23085 1.01238 0.97369 0.95496 1.22851 1.00817 0.95553 0.96500 1.23356 0.89630 0.95004 0.90034 0.89047 1.46932 1.58809 1.19167 1.10088 1.19886 1.21721 0.91658 1.07866 0.93469 1.26869 0.98141 1.04048 0.98557 1.71027 1.54925 0.97920 1.37541 0.83469 0.74557 0.73952 0.75398 1.21657 1.24475 1.16538 0.90467 0.86683 0.90763 0.79960 0.88821 0.89290 0.88932 0.79983 0.75855 0.88994 0.94287 0.88685 0.92091 0.88921 0.91693 0.94503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.83 113.37 1.11 1.23 16 2 O -0.30 -8.40 8.56 -68.70 -0.59 -8.99 16 3 C 0.13 3.74 6.71 22.93 0.15 3.89 16 4 C -0.17 -3.18 8.80 22.55 0.20 -2.98 16 5 C -0.06 -0.98 5.90 -19.72 -0.12 -1.10 16 6 C -0.11 -0.87 10.03 71.24 0.71 -0.15 16 7 C 0.05 1.08 10.85 84.89 0.92 2.00 16 8 N -0.44 -14.47 9.54 -184.63 -1.76 -16.24 16 9 C -0.01 -0.24 6.76 41.93 0.28 0.04 16 10 C 0.56 22.16 7.80 86.78 0.68 22.84 16 11 O -0.56 -23.44 14.79 17.10 0.25 -23.19 16 12 N -0.70 -27.40 5.08 -436.76 -2.22 -29.62 16 13 C 0.14 5.14 2.82 46.83 0.13 5.27 16 14 H 0.10 3.47 7.23 -2.39 -0.02 3.45 16 15 C -0.13 -4.98 6.26 32.43 0.20 -4.78 16 16 C 0.10 4.34 3.60 46.07 0.17 4.51 16 17 H 0.08 3.49 3.42 -2.39 -0.01 3.49 16 18 C -0.13 -4.45 6.22 32.05 0.20 -4.25 16 19 C -0.12 -3.73 6.44 32.21 0.21 -3.53 16 20 C 0.13 4.89 5.06 46.23 0.23 5.12 16 21 H 0.09 3.53 8.14 -2.39 -0.02 3.51 16 22 N -0.63 -29.83 2.83 -616.08 -1.75 -31.58 16 23 C -0.28 -16.34 10.81 84.03 0.91 -15.43 16 24 H 0.05 2.95 8.06 -2.91 -0.02 2.92 16 25 C -0.08 -5.05 5.49 84.86 0.47 -4.58 16 26 N -0.97 -63.59 13.70 21.65 0.30 -63.29 16 27 Si 1.10 54.57 25.01 68.60 1.72 56.29 16 28 H -0.29 -13.74 6.60 99.48 0.66 -13.08 16 29 H -0.32 -16.20 7.11 99.48 0.71 -15.49 16 30 H -0.24 -10.50 4.94 99.48 0.49 -10.00 16 31 H 0.08 0.73 7.70 -2.39 -0.02 0.72 16 32 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.07 0.75 7.70 -2.38 -0.02 0.74 16 34 H 0.18 1.77 6.46 -2.91 -0.02 1.75 16 35 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.09 0.54 8.09 -2.38 -0.02 0.52 16 37 H 0.09 0.38 8.09 -2.39 -0.02 0.36 16 38 H 0.18 3.34 8.06 -2.91 -0.02 3.32 16 39 H 0.41 17.14 7.98 -92.71 -0.74 16.40 16 40 H 0.09 2.99 7.80 -2.39 -0.02 2.97 16 41 H 0.04 1.68 8.00 -2.39 -0.02 1.66 16 42 H 0.09 2.54 7.80 -2.39 -0.02 2.52 16 43 H 0.06 2.12 6.48 -2.39 -0.02 2.11 16 44 H 0.09 2.35 7.82 -2.39 -0.02 2.33 16 45 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 46 H 0.25 16.20 8.73 -92.71 -0.81 15.39 16 Total: -1.00 -81.42 363.52 2.38 -79.03 By element: Atomic # 1 Polarization: 29.52 SS G_CDS: -0.03 Total: 29.49 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: 6.46 Total: 8.09 kcal Atomic # 7 Polarization: -135.29 SS G_CDS: -5.43 Total: -140.72 kcal Atomic # 8 Polarization: -31.84 SS G_CDS: -0.34 Total: -32.17 kcal Atomic # 14 Polarization: 54.57 SS G_CDS: 1.72 Total: 56.29 kcal Total: -81.42 2.38 -79.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097238151.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.645 kcal (2) G-P(sol) polarization free energy of solvation -81.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds