Wall clock time and date at job start Tue Mar 31 2020 16:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35687 * 117.00296 * 2 1 4 4 C 1.38894 * 119.62715 * 180.02562 * 3 2 1 5 5 C 1.39571 * 118.94302 * 180.22942 * 4 3 2 6 6 C 1.48164 * 120.88535 * 179.74619 * 5 4 3 7 7 O 1.21518 * 119.99707 * 179.97438 * 6 5 4 8 8 N 1.34770 * 120.00354 * 0.02562 * 6 5 4 9 9 C 1.46498 * 120.00210 * 179.97438 * 8 6 5 10 10 H 1.09009 * 110.55888 * 32.09761 * 9 8 6 11 11 C 1.54852 * 110.62782 * 269.02318 * 9 8 6 12 12 C 1.55845 * 103.44600 * 241.50761 * 11 9 8 13 13 H 1.09000 * 116.12457 * 159.14448 * 12 11 9 14 14 C 1.55843 * 105.06419 * 288.17718 * 12 11 9 15 15 C 1.54852 * 103.44693 * 71.82351 * 14 12 11 16 16 C 1.55836 * 103.44669 * 359.97438 * 15 14 12 17 17 H 1.08999 * 116.13071 * 159.14600 * 16 15 14 18 18 N 1.50236 * 101.05079 * 32.93775 * 12 11 9 19 19 C 1.36935 * 130.83960 * 126.00673 * 18 12 11 20 20 H 1.08009 * 120.00022 * 180.02562 * 19 18 12 21 21 C 1.38814 * 120.00063 * 0.02841 * 19 18 12 22 22 N 1.31616 * 119.99806 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99988 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47080 * 90.00431 * 23 21 19 25 25 H 1.48507 * 109.47258 * 210.00150 * 23 21 19 26 26 H 1.48504 * 109.47414 * 330.00115 * 23 21 19 27 27 C 1.39965 * 118.21861 * 359.50943 * 5 4 3 28 28 C 1.37968 * 119.13541 * 0.48937 * 27 5 4 29 29 C 1.50706 * 119.51490 * 179.77259 * 28 27 5 30 30 N 1.31908 * 120.97683 * 359.74756 * 28 27 5 31 31 H 1.08998 * 109.47666 * 60.00097 * 1 2 3 32 32 H 1.09003 * 109.47599 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47402 * 300.00029 * 1 2 3 34 34 H 1.08002 * 120.52328 * 359.94735 * 4 3 2 35 35 H 0.96998 * 120.00373 * 359.97438 * 8 6 5 36 36 H 1.08995 * 110.62264 * 359.97438 * 11 9 8 37 37 H 1.09002 * 110.62482 * 123.01612 * 11 9 8 38 38 H 1.09002 * 110.62402 * 190.31260 * 14 12 11 39 39 H 1.09000 * 110.62676 * 313.17333 * 14 12 11 40 40 H 1.08996 * 110.62244 * 241.50696 * 15 14 12 41 41 H 1.09005 * 110.62313 * 118.49195 * 15 14 12 42 42 H 0.97003 * 119.99923 * 179.97438 * 22 21 19 43 43 H 1.08000 * 120.43136 * 180.24469 * 27 5 4 44 44 H 1.08992 * 109.47120 * 269.98061 * 29 28 27 45 45 H 1.09005 * 109.46251 * 29.98047 * 29 28 27 46 46 H 1.08996 * 109.47097 * 149.97414 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4325 1.2725 -0.0005 5 6 4.0513 2.5236 0.0044 6 6 5.5282 2.6415 0.0096 7 8 6.0501 3.7389 0.0134 8 7 6.2929 1.5318 0.0092 9 6 7.7533 1.6484 0.0139 10 1 8.0644 2.5395 0.5593 11 6 8.3034 1.6708 -1.4335 12 6 9.2115 0.4058 -1.4956 13 1 9.4259 0.0172 -2.4911 14 6 10.4576 0.7589 -0.6288 15 6 9.9075 0.7366 0.8186 16 6 8.4039 0.3737 0.6292 17 1 7.8962 -0.0392 1.5009 18 7 8.4739 -0.5238 -0.5742 19 6 8.0082 -1.7964 -0.7708 20 1 7.4921 -2.3117 0.0259 21 6 8.1994 -2.4242 -1.9940 22 7 8.8288 -1.7964 -2.9646 23 14 7.5647 -4.1605 -2.2620 24 1 6.1773 -4.1046 -2.7885 25 1 8.4369 -4.8612 -3.2386 26 1 7.5754 -4.8961 -0.9720 27 6 3.2393 3.6636 -0.0009 28 6 1.8680 3.5116 -0.0004 29 6 0.9856 4.7333 -0.0009 30 7 1.3178 2.3127 0.0000 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8899 34 1 4.0230 0.3683 -0.0001 35 1 5.8765 0.6557 0.0058 36 1 7.4897 1.5946 -2.1547 37 1 8.8894 2.5732 -1.6076 38 1 11.2380 0.0083 -0.7546 39 1 10.8345 1.7494 -0.8837 40 1 10.0100 1.7171 1.2834 41 1 10.4152 -0.0250 1.4106 42 1 8.9627 -2.2353 -3.8193 43 1 3.6804 4.6494 -0.0014 44 1 0.7729 5.0282 1.0266 45 1 1.4945 5.5487 -0.5151 46 1 0.0515 4.5065 -0.5147 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097730114.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:24 Heat of formation + Delta-G solvation = 9.285536 kcal Electronic energy + Delta-G solvation = -28769.925166 eV Core-core repulsion = 24854.330135 eV Total energy + Delta-G solvation = -3915.595031 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.96813 -39.75242 -38.58218 -37.79150 -34.10594 -33.12564 -32.48002 -31.87499 -29.14537 -28.90468 -28.49669 -27.88486 -26.66609 -24.48384 -23.96784 -22.82552 -21.33189 -19.98121 -19.81803 -18.83936 -18.27859 -17.11282 -16.98935 -16.65491 -16.19468 -15.73994 -15.56665 -14.86652 -14.68602 -14.45559 -14.20642 -14.13931 -13.87465 -13.71815 -13.35114 -12.84656 -12.64816 -12.55403 -12.28883 -12.07744 -11.87027 -11.81792 -11.34934 -11.15797 -11.14698 -10.96093 -10.91662 -10.56895 -10.39736 -10.17883 -10.11388 -9.94908 -9.92753 -9.73799 -9.29853 -9.19962 -8.99692 -8.56854 -8.55158 -6.98252 -5.77232 -3.16619 0.64633 1.01590 2.89158 2.98110 3.35464 3.39150 3.40771 3.42540 3.75732 3.96462 4.38614 4.65754 4.78697 4.94559 5.00976 5.08582 5.11579 5.15279 5.28253 5.31894 5.35472 5.36068 5.46134 5.60924 5.65851 5.73495 5.76728 5.84914 5.99865 6.01977 6.07253 6.11795 6.20687 6.25897 6.38519 6.45605 6.57518 6.69713 6.79645 6.91808 7.04162 7.07727 7.28854 7.44412 7.66305 7.76122 7.85369 8.14166 8.42715 9.04377 9.67825 10.48195 11.31716 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.011165 B = 0.003924 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.142298 B = 7133.008108 C = 9075.776935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.304 6.304 3 C 0.323 3.677 4 C -0.163 4.163 5 C -0.043 4.043 6 C 0.554 3.446 7 O -0.539 6.539 8 N -0.693 5.693 9 C 0.127 3.873 10 H 0.083 0.917 11 C -0.143 4.143 12 C 0.153 3.847 13 H 0.154 0.846 14 C -0.139 4.139 15 C -0.127 4.127 16 C 0.124 3.876 17 H 0.089 0.911 18 N -0.591 5.591 19 C -0.217 4.217 20 H 0.079 0.921 21 C -0.008 4.008 22 N -0.919 5.919 23 Si 0.914 3.086 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 C -0.156 4.156 28 C 0.159 3.841 29 C -0.102 4.102 30 N -0.530 5.530 31 H 0.058 0.942 32 H 0.096 0.904 33 H 0.058 0.942 34 H 0.149 0.851 35 H 0.404 0.596 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.049 0.951 40 H 0.052 0.948 41 H 0.058 0.942 42 H 0.254 0.746 43 H 0.149 0.851 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.484 9.090 6.482 16.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.210 6.210 3 C 0.144 3.856 4 C -0.184 4.184 5 C -0.053 4.053 6 C 0.339 3.661 7 O -0.417 6.417 8 N -0.342 5.342 9 C 0.021 3.979 10 H 0.101 0.899 11 C -0.183 4.183 12 C 0.047 3.953 13 H 0.171 0.829 14 C -0.179 4.179 15 C -0.167 4.167 16 C 0.016 3.984 17 H 0.107 0.893 18 N -0.312 5.312 19 C -0.344 4.344 20 H 0.096 0.904 21 C -0.204 4.204 22 N -0.566 5.566 23 Si 0.745 3.255 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.208 1.208 27 C -0.177 4.177 28 C 0.023 3.977 29 C -0.159 4.159 30 N -0.256 5.256 31 H 0.077 0.923 32 H 0.114 0.886 33 H 0.076 0.924 34 H 0.167 0.833 35 H 0.241 0.759 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.167 0.833 44 H 0.099 0.901 45 H 0.098 0.902 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.912 9.187 6.301 17.054 hybrid contribution 0.101 -1.267 -0.164 1.281 sum -12.811 7.921 6.138 16.265 Atomic orbital electron populations 1.22855 0.77229 1.03010 1.02320 1.86295 1.22891 1.24087 1.87751 1.19588 0.88958 0.84617 0.92449 1.21300 0.92459 0.98887 1.05746 1.20298 0.94410 0.92957 0.97677 1.18037 0.85574 0.85018 0.77497 1.90740 1.74090 1.26359 1.50559 1.45985 1.07860 1.08431 1.71938 1.22735 0.77414 0.99509 0.98285 0.89898 1.23460 1.00364 0.99511 0.94984 1.23771 0.87699 0.85967 0.97872 0.82942 1.23068 0.99932 0.99129 0.95723 1.22862 0.96923 0.99328 0.97549 1.23178 0.94247 0.89400 0.91594 0.89348 1.46561 1.64519 1.11915 1.08184 1.19002 1.29757 0.88114 0.97569 0.90361 1.24695 1.01078 0.98581 0.96063 1.69456 1.46446 1.36608 1.04113 0.86082 0.78109 0.83788 0.77553 1.21624 1.21689 1.20755 1.21897 0.93158 0.99839 1.02795 1.20858 0.91660 0.91834 0.93358 1.20738 0.99040 0.92833 1.03335 1.66964 1.41218 0.98466 1.18925 0.92310 0.88559 0.92365 0.83290 0.75942 0.92149 0.92626 0.92603 0.93278 0.92946 0.92360 0.93511 0.83309 0.90104 0.90155 0.90388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.38 101.05 1.05 1.44 16 2 O -0.30 -4.05 10.47 -18.76 -0.20 -4.25 16 3 C 0.32 4.54 7.49 -17.16 -0.13 4.42 16 4 C -0.16 -2.33 9.55 -38.84 -0.37 -2.70 16 5 C -0.04 -0.64 5.91 -104.68 -0.62 -1.26 16 6 C 0.55 9.48 7.80 -12.19 -0.10 9.39 16 7 O -0.54 -10.49 16.09 5.35 0.09 -10.41 16 8 N -0.69 -11.97 5.03 -52.27 -0.26 -12.24 16 9 C 0.13 2.33 2.80 -65.47 -0.18 2.14 16 10 H 0.08 1.51 7.23 -51.92 -0.38 1.14 16 11 C -0.14 -2.88 6.23 -24.24 -0.15 -3.03 16 12 C 0.15 3.43 4.72 -62.80 -0.30 3.14 16 13 H 0.15 3.93 5.52 -51.93 -0.29 3.65 16 14 C -0.14 -2.70 6.44 -24.24 -0.16 -2.85 16 15 C -0.13 -2.25 6.44 -24.24 -0.16 -2.41 16 16 C 0.12 2.37 5.06 -62.81 -0.32 2.06 16 17 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 18 N -0.59 -13.73 2.99 -145.82 -0.44 -14.16 16 19 C -0.22 -5.57 10.59 -15.06 -0.16 -5.73 16 20 H 0.08 1.94 7.83 -52.48 -0.41 1.53 16 21 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 22 N -0.92 -25.45 10.46 55.49 0.58 -24.87 16 23 Si 0.91 21.26 29.55 -169.99 -5.02 16.24 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 C -0.16 -2.05 9.30 -39.03 -0.36 -2.41 16 28 C 0.16 1.89 6.77 -82.66 -0.56 1.33 16 29 C -0.10 -0.81 10.16 36.01 0.37 -0.45 16 30 N -0.53 -6.98 9.09 -9.59 -0.09 -7.06 16 31 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 32 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.53 8.10 -51.93 -0.42 0.10 16 34 H 0.15 2.06 6.53 -52.49 -0.34 1.71 16 35 H 0.40 6.82 6.80 -40.82 -0.28 6.54 16 36 H 0.06 1.32 7.98 -51.93 -0.41 0.91 16 37 H 0.06 1.04 7.82 -51.93 -0.41 0.63 16 38 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.05 0.85 7.82 -51.93 -0.41 0.44 16 40 H 0.05 0.82 7.82 -51.93 -0.41 0.41 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 43 H 0.15 1.81 7.74 -52.49 -0.41 1.41 16 44 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.08 0.52 8.07 -51.93 -0.42 0.10 16 46 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 374.66 15.07 5.65 5.65 Total: -1.00 -30.28 374.66 -8.59 -38.87 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -6.66 Total: 9.46 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: -2.24 Total: 2.77 kcal Atomic # 7 Polarization: -58.13 SS G_CDS: -0.20 Total: -58.33 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.11 Total: -14.66 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.28 -8.59 -38.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097730114.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.159 kcal (2) G-P(sol) polarization free energy of solvation -30.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds