Wall clock time and date at job start Tue Mar 31 2020 16:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35687 * 117.00296 * 2 1 4 4 C 1.38894 * 119.62715 * 180.02562 * 3 2 1 5 5 C 1.39571 * 118.94302 * 180.22942 * 4 3 2 6 6 C 1.48164 * 120.88535 * 179.74619 * 5 4 3 7 7 O 1.21518 * 119.99707 * 179.97438 * 6 5 4 8 8 N 1.34770 * 120.00354 * 0.02562 * 6 5 4 9 9 C 1.46498 * 120.00210 * 179.97438 * 8 6 5 10 10 H 1.09009 * 110.55888 * 32.09761 * 9 8 6 11 11 C 1.54852 * 110.62782 * 269.02318 * 9 8 6 12 12 C 1.55845 * 103.44600 * 241.50761 * 11 9 8 13 13 H 1.09000 * 116.12457 * 159.14448 * 12 11 9 14 14 C 1.55843 * 105.06419 * 288.17718 * 12 11 9 15 15 C 1.54852 * 103.44693 * 71.82351 * 14 12 11 16 16 C 1.55836 * 103.44669 * 359.97438 * 15 14 12 17 17 H 1.08999 * 116.13071 * 159.14600 * 16 15 14 18 18 N 1.50236 * 101.05079 * 32.93775 * 12 11 9 19 19 C 1.36935 * 130.83960 * 126.00673 * 18 12 11 20 20 H 1.08009 * 120.00022 * 180.02562 * 19 18 12 21 21 C 1.38814 * 120.00063 * 0.02841 * 19 18 12 22 22 N 1.31616 * 119.99806 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99988 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47080 * 90.00431 * 23 21 19 25 25 H 1.48507 * 109.47258 * 210.00150 * 23 21 19 26 26 H 1.48504 * 109.47414 * 330.00115 * 23 21 19 27 27 C 1.39965 * 118.21861 * 359.50943 * 5 4 3 28 28 C 1.37968 * 119.13541 * 0.48937 * 27 5 4 29 29 C 1.50706 * 119.51490 * 179.77259 * 28 27 5 30 30 N 1.31908 * 120.97683 * 359.74756 * 28 27 5 31 31 H 1.08998 * 109.47666 * 60.00097 * 1 2 3 32 32 H 1.09003 * 109.47599 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47402 * 300.00029 * 1 2 3 34 34 H 1.08002 * 120.52328 * 359.94735 * 4 3 2 35 35 H 0.96998 * 120.00373 * 359.97438 * 8 6 5 36 36 H 1.08995 * 110.62264 * 359.97438 * 11 9 8 37 37 H 1.09002 * 110.62482 * 123.01612 * 11 9 8 38 38 H 1.09002 * 110.62402 * 190.31260 * 14 12 11 39 39 H 1.09000 * 110.62676 * 313.17333 * 14 12 11 40 40 H 1.08996 * 110.62244 * 241.50696 * 15 14 12 41 41 H 1.09005 * 110.62313 * 118.49195 * 15 14 12 42 42 H 0.97003 * 119.99923 * 179.97438 * 22 21 19 43 43 H 1.08000 * 120.43136 * 180.24469 * 27 5 4 44 44 H 1.08992 * 109.47120 * 269.98061 * 29 28 27 45 45 H 1.09005 * 109.46251 * 29.98047 * 29 28 27 46 46 H 1.08996 * 109.47097 * 149.97414 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4325 1.2725 -0.0005 5 6 4.0513 2.5236 0.0044 6 6 5.5282 2.6415 0.0096 7 8 6.0501 3.7389 0.0134 8 7 6.2929 1.5318 0.0092 9 6 7.7533 1.6484 0.0139 10 1 8.0644 2.5395 0.5593 11 6 8.3034 1.6708 -1.4335 12 6 9.2115 0.4058 -1.4956 13 1 9.4259 0.0172 -2.4911 14 6 10.4576 0.7589 -0.6288 15 6 9.9075 0.7366 0.8186 16 6 8.4039 0.3737 0.6292 17 1 7.8962 -0.0392 1.5009 18 7 8.4739 -0.5238 -0.5742 19 6 8.0082 -1.7964 -0.7708 20 1 7.4921 -2.3117 0.0259 21 6 8.1994 -2.4242 -1.9940 22 7 8.8288 -1.7964 -2.9646 23 14 7.5647 -4.1605 -2.2620 24 1 6.1773 -4.1046 -2.7885 25 1 8.4369 -4.8612 -3.2386 26 1 7.5754 -4.8961 -0.9720 27 6 3.2393 3.6636 -0.0009 28 6 1.8680 3.5116 -0.0004 29 6 0.9856 4.7333 -0.0009 30 7 1.3178 2.3127 0.0000 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8899 34 1 4.0230 0.3683 -0.0001 35 1 5.8765 0.6557 0.0058 36 1 7.4897 1.5946 -2.1547 37 1 8.8894 2.5732 -1.6076 38 1 11.2380 0.0083 -0.7546 39 1 10.8345 1.7494 -0.8837 40 1 10.0100 1.7171 1.2834 41 1 10.4152 -0.0250 1.4106 42 1 8.9627 -2.2353 -3.8193 43 1 3.6804 4.6494 -0.0014 44 1 0.7729 5.0282 1.0266 45 1 1.4945 5.5487 -0.5151 46 1 0.0515 4.5065 -0.5147 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097730114.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:23 Heat of formation + Delta-G solvation = -10.372403 kcal Electronic energy + Delta-G solvation = -28770.777598 eV Core-core repulsion = 24854.330135 eV Total energy + Delta-G solvation = -3916.447464 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.05695 -41.17781 -39.95778 -38.87325 -35.53169 -34.58623 -34.00340 -32.83436 -30.96996 -30.44769 -29.46215 -29.27745 -27.54261 -26.20296 -25.32910 -23.81086 -22.73955 -21.56394 -21.25064 -20.36962 -19.45379 -18.85105 -18.17883 -17.82352 -17.14989 -17.00926 -16.80387 -16.70475 -16.06048 -15.78602 -15.56623 -15.27782 -15.07276 -14.96595 -14.65801 -14.20135 -13.73512 -13.66409 -13.39226 -13.33145 -13.05884 -12.91330 -12.90704 -12.75899 -12.72997 -12.67769 -12.11199 -12.04734 -11.95953 -11.89695 -11.72419 -11.48730 -11.07611 -11.03034 -10.94122 -10.88552 -10.68669 -10.04428 -9.55740 -8.86971 -7.75646 -5.15269 -0.46959 -0.00182 1.49369 1.49763 1.57438 1.73313 1.90584 2.12444 2.50469 2.65647 3.06619 3.37393 3.44632 3.50140 3.77993 3.89439 3.99778 4.00412 4.07370 4.27109 4.37250 4.39833 4.42092 4.45738 4.47309 4.52605 4.63619 4.67742 4.73524 4.79832 4.83165 4.86270 4.90342 4.97202 5.04765 5.08775 5.17103 5.18861 5.35657 5.38776 5.50134 5.56381 5.69460 5.90404 6.12007 6.28161 6.46040 6.66333 7.04378 7.07202 7.73165 8.58497 9.31550 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.011165 B = 0.003924 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.142298 B = 7133.008108 C = 9075.776935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.319 6.319 3 C 0.314 3.686 4 C -0.174 4.174 5 C -0.055 4.055 6 C 0.557 3.443 7 O -0.563 6.563 8 N -0.694 5.694 9 C 0.137 3.863 10 H 0.095 0.905 11 C -0.133 4.133 12 C 0.139 3.861 13 H 0.116 0.884 14 C -0.132 4.132 15 C -0.117 4.117 16 C 0.125 3.875 17 H 0.102 0.898 18 N -0.611 5.611 19 C -0.214 4.214 20 H 0.085 0.915 21 C -0.065 4.065 22 N -0.947 5.947 23 Si 0.970 3.030 24 H -0.291 1.291 25 H -0.301 1.301 26 H -0.271 1.271 27 C -0.158 4.158 28 C 0.163 3.837 29 C -0.100 4.100 30 N -0.531 5.531 31 H 0.059 0.941 32 H 0.120 0.880 33 H 0.063 0.937 34 H 0.147 0.853 35 H 0.406 0.594 36 H 0.033 0.967 37 H 0.071 0.929 38 H 0.038 0.962 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.060 0.940 42 H 0.245 0.755 43 H 0.159 0.841 44 H 0.098 0.902 45 H 0.097 0.903 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.896 10.307 8.178 19.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.226 6.226 3 C 0.136 3.864 4 C -0.195 4.195 5 C -0.066 4.066 6 C 0.344 3.656 7 O -0.443 6.443 8 N -0.342 5.342 9 C 0.031 3.969 10 H 0.113 0.887 11 C -0.174 4.174 12 C 0.032 3.968 13 H 0.133 0.867 14 C -0.171 4.171 15 C -0.157 4.157 16 C 0.018 3.982 17 H 0.120 0.880 18 N -0.332 5.332 19 C -0.343 4.343 20 H 0.103 0.897 21 C -0.257 4.257 22 N -0.596 5.596 23 Si 0.800 3.200 24 H -0.219 1.219 25 H -0.228 1.228 26 H -0.196 1.196 27 C -0.179 4.179 28 C 0.027 3.973 29 C -0.157 4.157 30 N -0.257 5.257 31 H 0.078 0.922 32 H 0.138 0.862 33 H 0.082 0.918 34 H 0.164 0.836 35 H 0.242 0.758 36 H 0.052 0.948 37 H 0.089 0.911 38 H 0.057 0.943 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.079 0.921 42 H 0.055 0.945 43 H 0.176 0.824 44 H 0.117 0.883 45 H 0.116 0.884 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.341 10.407 8.035 19.456 hybrid contribution 0.460 -1.583 -0.675 1.781 sum -13.880 8.824 7.361 18.020 Atomic orbital electron populations 1.23111 0.75350 1.04778 1.02607 1.86274 1.24843 1.23924 1.87608 1.19700 0.88985 0.85231 0.92508 1.21275 0.92932 0.98664 1.06662 1.20158 0.93132 0.93948 0.99313 1.18307 0.86487 0.84390 0.76464 1.90716 1.74805 1.27057 1.51764 1.45957 1.07542 1.08730 1.72001 1.22577 0.78009 0.99496 0.96816 0.88740 1.23324 0.99314 0.99048 0.95673 1.23608 0.89677 0.86653 0.96831 0.86682 1.22963 0.98032 0.99785 0.96320 1.22817 0.95296 1.01176 0.96416 1.23393 0.95506 0.88629 0.90657 0.87982 1.46745 1.64693 1.11735 1.10062 1.19338 1.28398 0.89168 0.97400 0.89746 1.25383 1.02346 1.01685 0.96323 1.69709 1.48268 1.37549 1.04119 0.85181 0.76975 0.80425 0.77372 1.21890 1.22758 1.19583 1.22098 0.93672 0.99650 1.02503 1.21506 0.91794 0.92663 0.91353 1.20878 0.98656 0.91337 1.04800 1.67092 1.41075 0.98649 1.18887 0.92207 0.86154 0.91812 0.83576 0.75798 0.94801 0.91077 0.94349 0.90910 0.89770 0.92136 0.94543 0.82359 0.88326 0.88400 0.89673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 10.38 113.37 1.18 1.81 16 2 O -0.32 -8.29 10.47 -90.06 -0.94 -9.23 16 3 C 0.31 8.63 7.49 84.80 0.63 9.27 16 4 C -0.17 -4.97 9.55 22.75 0.22 -4.75 16 5 C -0.06 -1.61 5.91 -19.90 -0.12 -1.73 16 6 C 0.56 18.77 7.80 86.88 0.68 19.44 16 7 O -0.56 -21.37 16.09 -3.77 -0.06 -21.44 16 8 N -0.69 -23.62 5.03 -437.57 -2.20 -25.83 16 9 C 0.14 4.86 2.80 46.59 0.13 4.99 16 10 H 0.09 3.20 7.23 -2.38 -0.02 3.18 16 11 C -0.13 -5.35 6.23 32.21 0.20 -5.15 16 12 C 0.14 6.29 4.72 46.23 0.22 6.51 16 13 H 0.12 6.20 5.52 -2.39 -0.01 6.19 16 14 C -0.13 -4.97 6.44 32.21 0.21 -4.76 16 15 C -0.12 -3.88 6.44 32.21 0.21 -3.67 16 16 C 0.13 4.58 5.06 46.20 0.23 4.82 16 17 H 0.10 3.45 8.14 -2.39 -0.02 3.43 16 18 N -0.61 -28.38 2.99 -615.27 -1.84 -30.22 16 19 C -0.21 -11.07 10.59 84.03 0.89 -10.18 16 20 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 21 C -0.06 -3.50 5.50 84.86 0.47 -3.03 16 22 N -0.95 -54.41 10.46 21.65 0.23 -54.18 16 23 Si 0.97 44.52 29.55 68.60 2.03 46.55 16 24 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 25 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 26 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 27 C -0.16 -3.93 9.30 22.62 0.21 -3.72 16 28 C 0.16 3.56 6.77 42.49 0.29 3.84 16 29 C -0.10 -1.28 10.16 71.24 0.72 -0.55 16 30 N -0.53 -13.16 9.09 -297.17 -2.70 -15.87 16 31 H 0.06 1.03 8.10 -2.39 -0.02 1.02 16 32 H 0.12 1.49 8.14 -2.39 -0.02 1.48 16 33 H 0.06 1.05 8.10 -2.39 -0.02 1.03 16 34 H 0.15 4.12 6.53 -2.91 -0.02 4.10 16 35 H 0.41 13.69 6.80 -92.71 -0.63 13.06 16 36 H 0.03 1.51 7.98 -2.39 -0.02 1.49 16 37 H 0.07 2.59 7.82 -2.39 -0.02 2.57 16 38 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.07 2.37 7.82 -2.39 -0.02 2.36 16 40 H 0.08 2.29 7.82 -2.39 -0.02 2.27 16 41 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 42 H 0.24 13.92 8.31 -92.71 -0.77 13.14 16 43 H 0.16 3.57 7.74 -2.91 -0.02 3.55 16 44 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.10 0.95 8.07 -2.38 -0.02 0.93 16 46 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -66.10 374.66 1.25 -64.85 By element: Atomic # 1 Polarization: 31.85 SS G_CDS: 0.38 Total: 32.23 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: 6.37 Total: 13.13 kcal Atomic # 7 Polarization: -119.58 SS G_CDS: -6.51 Total: -126.10 kcal Atomic # 8 Polarization: -29.66 SS G_CDS: -1.00 Total: -30.67 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -66.10 1.25 -64.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097730114.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.479 kcal (2) G-P(sol) polarization free energy of solvation -66.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds