Wall clock time and date at job start Tue Mar 31 2020 16:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35437 * 116.99588 * 2 1 4 4 N 1.32232 * 119.79891 * 359.97438 * 3 2 1 5 5 C 1.31879 * 121.79767 * 180.02562 * 4 3 2 6 6 C 1.50705 * 119.40619 * 180.02562 * 5 4 3 7 7 C 1.38361 * 121.18833 * 359.97438 * 5 4 3 8 8 C 1.38340 * 119.45385 * 359.78985 * 7 5 4 9 9 C 1.39988 * 118.34931 * 0.47406 * 8 7 5 10 10 C 1.47521 * 120.59483 * 179.75827 * 9 8 7 11 11 O 1.21589 * 119.99887 * 179.72205 * 10 9 8 12 12 N 1.34779 * 120.00235 * 359.72181 * 10 9 8 13 13 C 1.46497 * 120.00191 * 180.02562 * 12 10 9 14 14 H 1.08997 * 110.68497 * 32.01511 * 13 12 10 15 15 C 1.54854 * 110.62651 * 269.02852 * 13 12 10 16 16 C 1.55850 * 103.44570 * 241.50943 * 15 13 12 17 17 H 1.09001 * 115.56251 * 158.81178 * 16 15 13 18 18 C 1.55842 * 105.06059 * 288.17366 * 16 15 13 19 19 C 1.55878 * 103.53093 * 72.43096 * 18 16 15 20 20 C 1.55841 * 110.62670 * 155.00172 * 13 12 10 21 21 H 1.08996 * 115.56497 * 319.67823 * 20 13 12 22 22 N 1.50236 * 101.04628 * 32.93725 * 16 15 13 23 23 C 1.36941 * 130.83624 * 126.01511 * 22 16 15 24 24 H 1.08001 * 119.99894 * 185.54442 * 23 22 16 25 25 C 1.38817 * 119.99890 * 5.54506 * 23 22 16 26 26 N 1.31617 * 120.00116 * 9.34844 * 25 23 22 27 27 Si 1.86799 * 119.99534 * 189.35034 * 25 23 22 28 28 H 1.48494 * 109.47414 * 94.00870 * 27 25 23 29 29 H 1.48507 * 109.46623 * 214.00510 * 27 25 23 30 30 H 1.48495 * 109.47418 * 334.00146 * 27 25 23 31 31 H 1.09000 * 109.47357 * 60.00342 * 1 2 3 32 32 H 1.09007 * 109.46801 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46994 * 299.99500 * 1 2 3 34 34 H 1.08994 * 109.47467 * 89.99821 * 6 5 4 35 35 H 1.09002 * 109.46832 * 210.00349 * 6 5 4 36 36 H 1.08998 * 109.46691 * 329.99629 * 6 5 4 37 37 H 1.07999 * 120.27100 * 180.02562 * 7 5 4 38 38 H 1.07999 * 120.82456 * 180.23472 * 8 7 5 39 39 H 0.97000 * 119.99974 * 0.02562 * 12 10 9 40 40 H 1.09001 * 110.62665 * 123.01802 * 15 13 12 41 41 H 1.09004 * 110.62692 * 359.97438 * 15 13 12 42 42 H 1.09001 * 110.62492 * 190.31329 * 18 16 15 43 43 H 1.08994 * 110.62877 * 313.17279 * 18 16 15 44 44 H 1.09001 * 110.09634 * 241.13739 * 19 18 16 45 45 H 1.09000 * 111.60307 * 117.80375 * 19 18 16 46 46 H 0.96996 * 120.00215 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2068 0.0000 4 7 1.3196 2.3132 -0.0005 5 6 1.8769 3.5085 -0.0010 6 6 0.9997 4.7339 -0.0010 7 6 3.2524 3.6577 -0.0005 8 6 4.0586 2.5335 0.0049 9 6 3.4449 1.2753 -0.0004 10 6 4.2570 0.0438 -0.0003 11 8 3.7125 -1.0434 0.0002 12 7 5.6024 0.1237 -0.0007 13 6 6.4088 -1.0994 -0.0011 14 1 5.8988 -1.8967 -0.5417 15 6 6.7301 -1.5415 1.4477 16 6 8.2862 -1.4790 1.5091 17 1 8.7147 -1.3997 2.5082 18 6 8.7741 -2.6818 0.6466 19 6 8.4661 -2.2321 -0.8138 20 6 7.8144 -0.8299 -0.6179 21 1 7.8275 -0.1790 -1.4921 22 7 8.5648 -0.3289 0.5834 23 6 9.2816 0.8219 0.7756 24 1 9.2966 1.5830 0.0095 25 6 9.9891 1.0101 1.9551 26 7 10.1241 0.0162 2.8072 27 14 10.7494 2.6741 2.3326 28 1 9.8092 3.4716 3.1603 29 1 12.0207 2.4803 3.0754 30 1 11.0229 3.3931 1.0625 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0278 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 0.7885 5.0296 1.0266 35 1 1.5117 5.5472 -0.5153 36 1 0.0644 4.5111 -0.5145 37 1 3.6931 4.6437 -0.0006 38 1 5.1348 2.6242 0.0092 39 1 6.0367 0.9910 -0.0007 40 1 6.3793 -2.5581 1.6257 41 1 6.2898 -0.8505 2.1667 42 1 9.8459 -2.8348 0.7726 43 1 8.2252 -3.5873 0.9050 44 1 7.7607 -2.9219 -1.2772 45 1 9.3754 -2.1531 -1.4096 46 1 10.6188 0.1476 3.6312 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097985856.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:27 Heat of formation + Delta-G solvation = 10.828540 kcal Electronic energy + Delta-G solvation = -28990.221172 eV Core-core repulsion = 25074.693050 eV Total energy + Delta-G solvation = -3915.528122 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.96711 -39.52782 -38.09840 -38.05800 -33.90428 -33.09637 -32.43008 -31.86842 -29.09796 -28.99040 -28.56012 -27.82019 -26.63856 -24.22217 -23.31911 -22.95858 -21.49983 -19.97397 -19.80846 -18.77863 -18.26901 -17.27596 -16.97453 -16.89263 -16.14974 -15.50335 -14.90628 -14.73596 -14.45345 -14.41170 -14.25624 -14.16091 -13.83507 -13.65689 -13.11238 -12.85995 -12.63871 -12.57003 -12.40438 -12.05313 -11.83232 -11.79847 -11.22556 -11.14483 -11.12531 -10.95906 -10.90305 -10.48240 -10.34554 -10.10601 -10.05012 -9.98055 -9.91626 -9.62398 -9.28757 -9.09889 -8.89661 -8.60614 -8.35441 -6.94992 -5.78673 -3.14578 0.62594 1.15546 3.00498 3.06550 3.33974 3.38804 3.42011 3.53871 3.85111 4.00463 4.39191 4.51857 4.77627 4.91277 5.04514 5.13551 5.18608 5.22964 5.28413 5.29361 5.30302 5.35383 5.53001 5.65376 5.68776 5.71823 5.77122 5.88172 5.93055 6.08578 6.13043 6.17378 6.24853 6.31266 6.43637 6.50588 6.61777 6.77033 6.84064 6.96877 7.14203 7.17886 7.33889 7.46352 7.65232 7.77240 8.02491 8.12293 8.66524 9.03485 9.68102 10.51155 11.32473 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.012646 B = 0.003778 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.574044 B = 7410.197035 C = 9089.827151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.269 6.269 3 C 0.374 3.626 4 N -0.549 5.549 5 C 0.186 3.814 6 C -0.107 4.107 7 C -0.219 4.219 8 C -0.004 4.004 9 C -0.209 4.209 10 C 0.559 3.441 11 O -0.529 6.529 12 N -0.703 5.703 13 C 0.133 3.867 14 H 0.082 0.918 15 C -0.146 4.146 16 C 0.157 3.843 17 H 0.145 0.855 18 C -0.134 4.134 19 C -0.127 4.127 20 C 0.124 3.876 21 H 0.086 0.914 22 N -0.591 5.591 23 C -0.217 4.217 24 H 0.078 0.922 25 C -0.008 4.008 26 N -0.915 5.915 27 Si 0.911 3.089 28 H -0.290 1.290 29 H -0.292 1.292 30 H -0.282 1.282 31 H 0.057 0.943 32 H 0.097 0.903 33 H 0.057 0.943 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.143 0.857 38 H 0.149 0.851 39 H 0.399 0.601 40 H 0.055 0.945 41 H 0.058 0.942 42 H 0.056 0.944 43 H 0.048 0.952 44 H 0.050 0.950 45 H 0.058 0.942 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.631 5.383 -6.169 17.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.172 6.172 3 C 0.193 3.807 4 N -0.274 5.274 5 C 0.048 3.952 6 C -0.164 4.164 7 C -0.239 4.239 8 C -0.030 4.030 9 C -0.215 4.215 10 C 0.345 3.655 11 O -0.406 6.406 12 N -0.354 5.354 13 C 0.026 3.974 14 H 0.100 0.900 15 C -0.186 4.186 16 C 0.051 3.949 17 H 0.162 0.838 18 C -0.174 4.174 19 C -0.167 4.167 20 C 0.016 3.984 21 H 0.104 0.896 22 N -0.312 5.312 23 C -0.345 4.345 24 H 0.096 0.904 25 C -0.205 4.205 26 N -0.562 5.562 27 Si 0.742 3.258 28 H -0.217 1.217 29 H -0.218 1.218 30 H -0.207 1.207 31 H 0.076 0.924 32 H 0.115 0.885 33 H 0.076 0.924 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.161 0.839 38 H 0.166 0.834 39 H 0.235 0.765 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.077 0.923 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -16.591 4.414 -6.001 18.187 hybrid contribution 1.325 1.464 0.256 1.991 sum -15.266 5.878 -5.745 17.338 Atomic orbital electron populations 1.22920 0.77922 1.03108 1.02054 1.86565 1.21985 1.22946 1.85749 1.19797 0.88141 0.84829 0.87912 1.67238 1.40350 0.98214 1.21624 1.21131 0.92158 0.91918 0.89947 1.20799 0.99274 0.92845 1.03472 1.21738 0.93767 1.00039 1.08398 1.21753 1.01019 0.90465 0.89722 1.20149 0.91577 0.95392 1.14404 1.17737 0.82373 0.88009 0.77416 1.90786 1.71779 1.28298 1.49765 1.45891 1.04953 1.10725 1.73809 1.22595 0.91469 0.85496 0.97803 0.90026 1.23487 1.00390 0.99352 0.95369 1.23547 0.89478 0.84452 0.97436 0.83815 1.23190 1.00587 0.98289 0.95321 1.23028 0.99552 0.96761 0.97397 1.23165 0.89903 0.93979 0.91401 0.89567 1.46560 1.57456 1.19423 1.07762 1.18990 1.21947 0.92258 1.01321 0.90432 1.24709 1.00197 0.97718 0.97835 1.69616 1.45379 1.29419 1.11809 0.86110 0.78434 0.83303 0.77946 1.21734 1.21811 1.20717 0.92449 0.88503 0.92426 0.89885 0.90144 0.90335 0.83945 0.83358 0.76544 0.92622 0.92350 0.92526 0.93331 0.93108 0.92287 0.93582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.38 101.05 1.05 1.45 16 2 O -0.27 -4.31 8.58 -39.77 -0.34 -4.65 16 3 C 0.37 5.82 7.51 -16.61 -0.12 5.69 16 4 N -0.55 -7.37 9.11 -9.20 -0.08 -7.46 16 5 C 0.19 2.05 6.78 -82.52 -0.56 1.49 16 6 C -0.11 -0.75 10.16 36.01 0.37 -0.39 16 7 C -0.22 -2.32 9.71 -39.50 -0.38 -2.70 16 8 C 0.00 -0.05 9.64 -38.89 -0.37 -0.42 16 9 C -0.21 -3.27 5.90 -104.69 -0.62 -3.89 16 10 C 0.56 10.17 7.77 -12.48 -0.10 10.07 16 11 O -0.53 -11.19 14.84 -16.48 -0.24 -11.44 16 12 N -0.70 -12.34 5.03 -52.44 -0.26 -12.60 16 13 C 0.13 2.50 2.82 -65.44 -0.18 2.31 16 14 H 0.08 1.56 7.26 -51.93 -0.38 1.18 16 15 C -0.15 -2.98 6.23 -24.23 -0.15 -3.13 16 16 C 0.16 3.57 4.67 -62.80 -0.29 3.27 16 17 H 0.14 3.74 5.73 -51.93 -0.30 3.44 16 18 C -0.13 -2.69 6.46 -23.68 -0.15 -2.84 16 19 C -0.13 -2.34 6.53 -23.67 -0.15 -2.49 16 20 C 0.12 2.40 5.01 -62.80 -0.31 2.09 16 21 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 22 N -0.59 -13.79 2.98 -145.81 -0.43 -14.23 16 23 C -0.22 -5.56 10.56 -15.06 -0.16 -5.72 16 24 H 0.08 1.90 7.85 -52.49 -0.41 1.49 16 25 C -0.01 -0.22 5.47 -17.43 -0.10 -0.31 16 26 N -0.92 -25.46 10.64 55.49 0.59 -24.87 16 27 Si 0.91 20.98 29.56 -169.99 -5.03 15.96 16 28 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 29 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 30 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 31 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 32 H 0.10 0.88 8.14 -51.92 -0.42 0.46 16 33 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.41 8.07 -51.93 -0.42 -0.01 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 38 H 0.15 1.65 6.52 -52.49 -0.34 1.31 16 39 H 0.40 6.56 6.76 -40.82 -0.28 6.28 16 40 H 0.06 1.07 7.82 -51.93 -0.41 0.66 16 41 H 0.06 1.28 7.98 -51.93 -0.41 0.86 16 42 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.05 0.87 7.82 -51.93 -0.41 0.46 16 44 H 0.05 0.82 7.85 -51.93 -0.41 0.42 16 45 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 372.75 15.07 5.62 5.62 Total: -1.00 -31.80 372.75 -9.13 -40.92 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -6.69 Total: 8.27 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: -2.25 Total: 4.47 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: -0.19 Total: -59.16 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: -0.59 Total: -16.09 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.80 -9.13 -40.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097985856.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.752 kcal (2) G-P(sol) polarization free energy of solvation -31.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds