Wall clock time and date at job start Tue Mar 31 2020 16:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35437 * 116.99588 * 2 1 4 4 N 1.32232 * 119.79891 * 359.97438 * 3 2 1 5 5 C 1.31879 * 121.79767 * 180.02562 * 4 3 2 6 6 C 1.50705 * 119.40619 * 180.02562 * 5 4 3 7 7 C 1.38361 * 121.18833 * 359.97438 * 5 4 3 8 8 C 1.38340 * 119.45385 * 359.78985 * 7 5 4 9 9 C 1.39988 * 118.34931 * 0.47406 * 8 7 5 10 10 C 1.47521 * 120.59483 * 179.75827 * 9 8 7 11 11 O 1.21589 * 119.99887 * 179.72205 * 10 9 8 12 12 N 1.34779 * 120.00235 * 359.72181 * 10 9 8 13 13 C 1.46497 * 120.00191 * 180.02562 * 12 10 9 14 14 H 1.08997 * 110.68497 * 32.01511 * 13 12 10 15 15 C 1.54854 * 110.62651 * 269.02852 * 13 12 10 16 16 C 1.55850 * 103.44570 * 241.50943 * 15 13 12 17 17 H 1.09001 * 115.56251 * 158.81178 * 16 15 13 18 18 C 1.55842 * 105.06059 * 288.17366 * 16 15 13 19 19 C 1.55878 * 103.53093 * 72.43096 * 18 16 15 20 20 C 1.55841 * 110.62670 * 155.00172 * 13 12 10 21 21 H 1.08996 * 115.56497 * 319.67823 * 20 13 12 22 22 N 1.50236 * 101.04628 * 32.93725 * 16 15 13 23 23 C 1.36941 * 130.83624 * 126.01511 * 22 16 15 24 24 H 1.08001 * 119.99894 * 185.54442 * 23 22 16 25 25 C 1.38817 * 119.99890 * 5.54506 * 23 22 16 26 26 N 1.31617 * 120.00116 * 9.34844 * 25 23 22 27 27 Si 1.86799 * 119.99534 * 189.35034 * 25 23 22 28 28 H 1.48494 * 109.47414 * 94.00870 * 27 25 23 29 29 H 1.48507 * 109.46623 * 214.00510 * 27 25 23 30 30 H 1.48495 * 109.47418 * 334.00146 * 27 25 23 31 31 H 1.09000 * 109.47357 * 60.00342 * 1 2 3 32 32 H 1.09007 * 109.46801 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46994 * 299.99500 * 1 2 3 34 34 H 1.08994 * 109.47467 * 89.99821 * 6 5 4 35 35 H 1.09002 * 109.46832 * 210.00349 * 6 5 4 36 36 H 1.08998 * 109.46691 * 329.99629 * 6 5 4 37 37 H 1.07999 * 120.27100 * 180.02562 * 7 5 4 38 38 H 1.07999 * 120.82456 * 180.23472 * 8 7 5 39 39 H 0.97000 * 119.99974 * 0.02562 * 12 10 9 40 40 H 1.09001 * 110.62665 * 123.01802 * 15 13 12 41 41 H 1.09004 * 110.62692 * 359.97438 * 15 13 12 42 42 H 1.09001 * 110.62492 * 190.31329 * 18 16 15 43 43 H 1.08994 * 110.62877 * 313.17279 * 18 16 15 44 44 H 1.09001 * 110.09634 * 241.13739 * 19 18 16 45 45 H 1.09000 * 111.60307 * 117.80375 * 19 18 16 46 46 H 0.96996 * 120.00215 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2068 0.0000 4 7 1.3196 2.3132 -0.0005 5 6 1.8769 3.5085 -0.0010 6 6 0.9997 4.7339 -0.0010 7 6 3.2524 3.6577 -0.0005 8 6 4.0586 2.5335 0.0049 9 6 3.4449 1.2753 -0.0004 10 6 4.2570 0.0438 -0.0003 11 8 3.7125 -1.0434 0.0002 12 7 5.6024 0.1237 -0.0007 13 6 6.4088 -1.0994 -0.0011 14 1 5.8988 -1.8967 -0.5417 15 6 6.7301 -1.5415 1.4477 16 6 8.2862 -1.4790 1.5091 17 1 8.7147 -1.3997 2.5082 18 6 8.7741 -2.6818 0.6466 19 6 8.4661 -2.2321 -0.8138 20 6 7.8144 -0.8299 -0.6179 21 1 7.8275 -0.1790 -1.4921 22 7 8.5648 -0.3289 0.5834 23 6 9.2816 0.8219 0.7756 24 1 9.2966 1.5830 0.0095 25 6 9.9891 1.0101 1.9551 26 7 10.1241 0.0162 2.8072 27 14 10.7494 2.6741 2.3326 28 1 9.8092 3.4716 3.1603 29 1 12.0207 2.4803 3.0754 30 1 11.0229 3.3931 1.0625 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0278 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 0.7885 5.0296 1.0266 35 1 1.5117 5.5472 -0.5153 36 1 0.0644 4.5111 -0.5145 37 1 3.6931 4.6437 -0.0006 38 1 5.1348 2.6242 0.0092 39 1 6.0367 0.9910 -0.0007 40 1 6.3793 -2.5581 1.6257 41 1 6.2898 -0.8505 2.1667 42 1 9.8459 -2.8348 0.7726 43 1 8.2252 -3.5873 0.9050 44 1 7.7607 -2.9219 -1.2772 45 1 9.3754 -2.1531 -1.4096 46 1 10.6188 0.1476 3.6312 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097985856.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:26 Heat of formation + Delta-G solvation = -9.429357 kcal Electronic energy + Delta-G solvation = -28991.099620 eV Core-core repulsion = 25074.693050 eV Total energy + Delta-G solvation = -3916.406570 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.03303 -41.03490 -39.54848 -39.08734 -35.36328 -34.53118 -33.91718 -32.76915 -30.94255 -30.47733 -29.69639 -29.11466 -27.67115 -26.08218 -24.41808 -23.90047 -22.88170 -21.54136 -21.35641 -20.38585 -19.33966 -18.81684 -18.49889 -17.97804 -17.18392 -16.93254 -16.70091 -16.00872 -15.88629 -15.50996 -15.45326 -15.20319 -15.14534 -14.96264 -14.58082 -14.03231 -13.72869 -13.65398 -13.54176 -13.32402 -13.03467 -12.91880 -12.82543 -12.74922 -12.69311 -12.66947 -12.07419 -12.04195 -11.93405 -11.88505 -11.69244 -11.31692 -11.10508 -10.97964 -10.90910 -10.78880 -10.55902 -9.99109 -9.47517 -8.84404 -7.76283 -5.12754 -0.39010 0.19550 1.51739 1.51846 1.60475 1.85853 2.03831 2.21778 2.52880 2.74199 3.11461 3.38936 3.45625 3.67735 3.73878 3.88646 4.02536 4.08904 4.20903 4.27658 4.32061 4.38106 4.38501 4.47056 4.49678 4.63381 4.66291 4.69937 4.71998 4.80805 4.83637 4.90380 4.93250 4.99725 5.08981 5.14276 5.16750 5.20380 5.39037 5.45430 5.54022 5.61439 5.72324 5.90117 6.18929 6.24317 6.59527 6.73745 7.05759 7.28068 7.74256 8.61447 9.33898 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.012646 B = 0.003778 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.574044 B = 7410.197035 C = 9089.827151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.300 6.300 3 C 0.357 3.643 4 N -0.556 5.556 5 C 0.185 3.815 6 C -0.104 4.104 7 C -0.210 4.210 8 C -0.004 4.004 9 C -0.241 4.241 10 C 0.559 3.441 11 O -0.566 6.566 12 N -0.699 5.699 13 C 0.143 3.857 14 H 0.086 0.914 15 C -0.135 4.135 16 C 0.145 3.855 17 H 0.108 0.892 18 C -0.128 4.128 19 C -0.119 4.119 20 C 0.128 3.872 21 H 0.103 0.897 22 N -0.609 5.609 23 C -0.215 4.215 24 H 0.088 0.912 25 C -0.066 4.066 26 N -0.947 5.947 27 Si 0.972 3.028 28 H -0.291 1.291 29 H -0.305 1.305 30 H -0.266 1.266 31 H 0.064 0.936 32 H 0.114 0.886 33 H 0.061 0.939 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.080 0.920 37 H 0.180 0.820 38 H 0.160 0.840 39 H 0.405 0.595 40 H 0.066 0.934 41 H 0.035 0.965 42 H 0.035 0.965 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.060 0.940 46 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.788 7.559 -7.772 19.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.205 6.205 3 C 0.177 3.823 4 N -0.282 5.282 5 C 0.047 3.953 6 C -0.161 4.161 7 C -0.230 4.230 8 C -0.029 4.029 9 C -0.247 4.247 10 C 0.347 3.653 11 O -0.446 6.446 12 N -0.350 5.350 13 C 0.037 3.963 14 H 0.104 0.896 15 C -0.176 4.176 16 C 0.039 3.961 17 H 0.125 0.875 18 C -0.168 4.168 19 C -0.159 4.159 20 C 0.020 3.980 21 H 0.121 0.879 22 N -0.330 5.330 23 C -0.344 4.344 24 H 0.106 0.894 25 C -0.259 4.259 26 N -0.596 5.596 27 Si 0.802 3.198 28 H -0.219 1.219 29 H -0.232 1.232 30 H -0.191 1.191 31 H 0.083 0.917 32 H 0.132 0.868 33 H 0.080 0.920 34 H 0.115 0.885 35 H 0.126 0.874 36 H 0.098 0.902 37 H 0.198 0.802 38 H 0.177 0.823 39 H 0.241 0.759 40 H 0.084 0.916 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.088 0.912 44 H 0.098 0.902 45 H 0.079 0.921 46 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -17.767 6.607 -7.642 20.438 hybrid contribution 1.581 0.847 0.744 1.942 sum -16.186 7.454 -6.898 19.108 Atomic orbital electron populations 1.23120 0.76040 1.04459 1.02564 1.86512 1.24116 1.23907 1.85937 1.19978 0.88354 0.85356 0.88601 1.67342 1.40285 0.98511 1.22078 1.21953 0.93294 0.92306 0.87711 1.20948 0.98898 0.91541 1.04694 1.22161 0.93457 1.00923 1.06445 1.21958 1.01836 0.89998 0.89128 1.20050 0.91644 0.95328 1.17678 1.18129 0.82368 0.88560 0.76248 1.90748 1.72374 1.29905 1.51596 1.45802 1.04905 1.10538 1.73717 1.22400 0.91376 0.86229 0.96328 0.89646 1.23347 0.98636 0.99470 0.96122 1.23381 0.90690 0.85721 0.96353 0.87498 1.23095 0.99441 0.98087 0.96153 1.22989 1.00245 0.96491 0.96179 1.23345 0.89316 0.94675 0.90631 0.87903 1.46738 1.57580 1.19220 1.09499 1.19378 1.20741 0.93104 1.01156 0.89380 1.25446 1.01711 1.00547 0.98226 1.69850 1.46719 1.31078 1.11992 0.85142 0.76807 0.79963 0.77908 1.21855 1.23220 1.19061 0.91700 0.86821 0.92034 0.88530 0.87406 0.90154 0.80248 0.82266 0.75883 0.91572 0.94611 0.94594 0.91193 0.90219 0.92078 0.94620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 10.38 113.37 1.18 1.90 16 2 O -0.30 -9.78 8.58 -66.51 -0.57 -10.35 16 3 C 0.36 11.07 7.51 85.13 0.64 11.71 16 4 N -0.56 -14.22 9.11 -296.04 -2.70 -16.91 16 5 C 0.18 3.57 6.78 42.58 0.29 3.85 16 6 C -0.10 -1.07 10.16 71.24 0.72 -0.35 16 7 C -0.21 -3.78 9.71 22.32 0.22 -3.56 16 8 C 0.00 -0.09 9.64 22.72 0.22 0.13 16 9 C -0.24 -7.48 5.90 -19.91 -0.12 -7.60 16 10 C 0.56 20.47 7.77 86.69 0.67 21.15 16 11 O -0.57 -24.39 14.84 16.82 0.25 -24.14 16 12 N -0.70 -24.22 5.03 -438.09 -2.20 -26.42 16 13 C 0.14 5.27 2.82 46.61 0.13 5.41 16 14 H 0.09 3.14 7.26 -2.39 -0.02 3.12 16 15 C -0.14 -5.57 6.23 32.21 0.20 -5.37 16 16 C 0.15 6.69 4.67 46.23 0.22 6.90 16 17 H 0.11 5.82 5.73 -2.39 -0.01 5.81 16 18 C -0.13 -5.08 6.46 32.57 0.21 -4.87 16 19 C -0.12 -4.14 6.53 32.58 0.21 -3.93 16 20 C 0.13 4.75 5.01 46.23 0.23 4.98 16 21 H 0.10 3.50 8.14 -2.39 -0.02 3.48 16 22 N -0.61 -28.28 2.98 -615.23 -1.83 -30.11 16 23 C -0.22 -10.93 10.56 84.03 0.89 -10.05 16 24 H 0.09 4.19 7.85 -2.91 -0.02 4.17 16 25 C -0.07 -3.55 5.47 84.86 0.46 -3.08 16 26 N -0.95 -54.40 10.64 21.65 0.23 -54.17 16 27 Si 0.97 43.39 29.56 68.60 2.03 45.42 16 28 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 29 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 30 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 31 H 0.06 1.29 8.10 -2.39 -0.02 1.28 16 32 H 0.11 2.02 8.14 -2.38 -0.02 2.00 16 33 H 0.06 1.27 8.10 -2.39 -0.02 1.25 16 34 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.11 0.57 8.07 -2.39 -0.02 0.55 16 36 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.18 1.85 8.06 -2.91 -0.02 1.83 16 38 H 0.16 3.26 6.52 -2.91 -0.02 3.24 16 39 H 0.40 12.97 6.76 -92.71 -0.63 12.35 16 40 H 0.07 2.54 7.82 -2.39 -0.02 2.52 16 41 H 0.04 1.60 7.98 -2.38 -0.02 1.58 16 42 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.07 2.43 7.82 -2.39 -0.02 2.41 16 44 H 0.08 2.33 7.85 -2.39 -0.02 2.32 16 45 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 46 H 0.24 13.87 8.31 -92.71 -0.77 13.10 16 Total: -1.00 -71.18 372.75 1.96 -69.22 By element: Atomic # 1 Polarization: 29.86 SS G_CDS: 0.38 Total: 30.24 kcal Atomic # 6 Polarization: 10.85 SS G_CDS: 6.37 Total: 17.22 kcal Atomic # 7 Polarization: -121.12 SS G_CDS: -6.50 Total: -127.62 kcal Atomic # 8 Polarization: -34.17 SS G_CDS: -0.32 Total: -34.49 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -71.18 1.96 -69.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097985856.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.795 kcal (2) G-P(sol) polarization free energy of solvation -71.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds