Wall clock time and date at job start Tue Mar 31 2020 17:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37996 * 120.81946 * 2 1 4 4 C 1.39129 * 119.26300 * 180.26976 * 3 2 1 5 5 O 1.35494 * 119.52205 * 179.71997 * 4 3 2 6 6 N 1.32441 * 120.94780 * 359.70363 * 4 3 2 7 7 C 1.31630 * 121.79941 * 0.02562 * 6 4 3 8 8 C 1.39565 * 120.62896 * 359.97438 * 7 6 4 9 9 C 1.47615 * 120.49792 * 179.97438 * 8 7 6 10 10 O 1.21588 * 119.99890 * 173.90911 * 9 8 7 11 11 N 1.34773 * 120.00196 * 353.91152 * 9 8 7 12 12 C 1.46508 * 119.99823 * 180.02562 * 11 9 8 13 13 C 1.54185 * 112.24570 * 299.44825 * 12 11 9 14 14 C 1.54853 * 104.30155 * 261.21378 * 13 12 11 15 15 C 1.56225 * 103.17591 * 322.23646 * 14 13 12 16 16 C 1.54179 * 103.64873 * 37.34163 * 15 14 13 17 17 H 1.08995 * 111.62073 * 99.67172 * 16 15 14 18 18 C 1.53798 * 109.12429 * 223.52989 * 16 15 14 19 19 N 1.47222 * 106.35943 * 133.48846 * 18 16 15 20 20 C 1.36929 * 126.70423 * 148.74612 * 19 18 16 21 21 H 1.08007 * 120.00213 * 180.02562 * 20 19 18 22 22 C 1.38818 * 120.00188 * 0.02562 * 20 19 18 23 23 N 1.31620 * 119.99750 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00052 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47272 * 89.99649 * 24 22 20 26 26 H 1.48508 * 109.46779 * 209.99892 * 24 22 20 27 27 H 1.48501 * 109.47002 * 329.99485 * 24 22 20 28 28 C 1.47226 * 106.59340 * 328.75728 * 19 18 16 29 29 H 1.09001 * 109.46849 * 263.91219 * 1 2 3 30 30 H 1.08998 * 109.47175 * 23.91728 * 1 2 3 31 31 H 1.08995 * 109.46827 * 143.91519 * 1 2 3 32 32 H 1.07999 * 120.36850 * 359.97438 * 3 2 1 33 33 H 0.96704 * 114.00087 * 269.98058 * 5 4 3 34 34 H 1.08003 * 119.68493 * 179.97438 * 7 6 4 35 35 H 0.97000 * 120.00214 * 0.02562 * 11 9 8 36 36 H 1.08997 * 110.46686 * 19.92536 * 13 12 11 37 37 H 1.09007 * 110.46422 * 142.51252 * 13 12 11 38 38 H 1.08999 * 110.75459 * 80.18281 * 14 13 12 39 39 H 1.08996 * 110.75538 * 203.36793 * 14 13 12 40 40 H 1.08998 * 109.69663 * 279.36183 * 15 14 13 41 41 H 1.08997 * 111.85194 * 156.35716 * 15 14 13 42 42 H 1.09002 * 110.07732 * 252.70464 * 18 16 15 43 43 H 1.08998 * 110.08306 * 14.25990 * 18 16 15 44 44 H 0.96995 * 119.99617 * 180.02562 * 23 22 20 45 45 H 1.09003 * 110.07294 * 150.45721 * 28 19 18 46 46 H 1.08994 * 110.08236 * 272.01201 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6048 1.1473 -0.0057 5 8 4.3042 2.3078 -0.0115 6 7 4.2548 -0.0066 -0.0053 7 6 3.6205 -1.1600 0.0001 8 6 2.2256 -1.2043 0.0060 9 6 1.5172 -2.4994 0.0114 10 8 0.3073 -2.5301 0.1283 11 7 2.2115 -3.6478 -0.1131 12 6 1.5083 -4.9331 -0.1083 13 6 0.7367 -5.1714 1.2052 14 6 1.6699 -6.0858 2.0365 15 6 2.2865 -7.0370 0.9615 16 6 2.4872 -6.1211 -0.2625 17 1 3.5202 -5.7839 -0.3466 18 6 2.0286 -6.8643 -1.5285 19 7 1.1929 -5.9176 -2.2853 20 6 1.0548 -5.8547 -3.6461 21 1 0.4087 -5.1114 -4.0896 22 6 1.7450 -6.7463 -4.4559 23 7 2.5327 -7.6518 -3.9155 24 14 1.5571 -6.6600 -6.3123 25 1 2.5827 -5.7433 -6.8717 26 1 1.7362 -8.0157 -6.8915 27 1 0.2028 -6.1526 -6.6497 28 6 0.5350 -5.0514 -1.2931 29 1 -0.3633 -0.1090 1.0219 30 1 -0.3633 0.9394 -0.4166 31 1 -0.3633 -0.8305 -0.6053 32 1 1.6936 2.1314 -0.0004 33 1 4.5038 2.6423 -0.8966 34 1 4.1849 -2.0808 -0.0001 35 1 3.1767 -3.6234 -0.2060 36 1 0.5666 -4.2279 1.7238 37 1 -0.2098 -5.6737 1.0054 38 1 2.4545 -5.5017 2.5176 39 1 1.1006 -6.6485 2.7762 40 1 1.5811 -7.8348 0.7290 41 1 3.2401 -7.4528 1.2868 42 1 2.8932 -7.1586 -2.1235 43 1 1.4448 -7.7434 -1.2557 44 1 3.0153 -8.2745 -4.4813 45 1 0.3464 -4.0673 -1.7221 46 1 -0.4013 -5.5026 -0.9647 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099019516.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:09 Heat of formation + Delta-G solvation = -8.223109 kcal Electronic energy + Delta-G solvation = -29313.964773 eV Core-core repulsion = 25397.610510 eV Total energy + Delta-G solvation = -3916.354263 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.07120 -39.97116 -38.28566 -37.07712 -34.59056 -34.17683 -33.35248 -31.50939 -30.76066 -29.39078 -28.23333 -27.47137 -24.77993 -24.73905 -24.11775 -22.51314 -21.55707 -20.28943 -19.83964 -18.92657 -18.62566 -17.67312 -17.23874 -16.65833 -16.06008 -15.64533 -15.16696 -15.02491 -14.87540 -14.36628 -14.32819 -13.78050 -13.56072 -13.34141 -13.14364 -12.97197 -12.72751 -12.61718 -12.48102 -12.40341 -11.89151 -11.65698 -11.49771 -11.24406 -10.97992 -10.81119 -10.75860 -10.61401 -10.30455 -10.26403 -9.96050 -9.93712 -9.78756 -9.75261 -9.49453 -9.29741 -9.17662 -8.76680 -8.59870 -6.87442 -5.65507 -3.10077 0.38592 0.94423 2.77869 3.24626 3.34600 3.38239 3.43650 3.45461 3.66827 4.28656 4.46400 4.48115 4.59564 4.77359 4.90827 4.99378 5.01130 5.21989 5.26253 5.42835 5.47197 5.56267 5.64787 5.67413 5.75407 5.80660 5.84996 5.89133 5.99388 6.03935 6.08315 6.15274 6.24351 6.33174 6.40330 6.46679 6.54037 6.66100 6.74605 6.81375 7.11672 7.14587 7.44503 7.57841 7.59452 7.71444 7.83303 8.37875 8.39682 9.19928 9.80393 10.47836 11.35346 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.011071 B = 0.003914 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.494595 B = 7151.296370 C = 8404.082333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.034 3.966 3 C -0.199 4.199 4 C 0.330 3.670 5 O -0.483 6.483 6 N -0.511 5.511 7 C 0.165 3.835 8 C -0.197 4.197 9 C 0.563 3.437 10 O -0.526 6.526 11 N -0.697 5.697 12 C 0.162 3.838 13 C -0.116 4.116 14 C -0.124 4.124 15 C -0.114 4.114 16 C -0.113 4.113 17 H 0.073 0.927 18 C 0.140 3.860 19 N -0.598 5.598 20 C -0.216 4.216 21 H 0.077 0.923 22 C -0.012 4.012 23 N -0.922 5.922 24 Si 0.914 3.086 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.282 1.282 28 C 0.137 3.863 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.105 0.895 32 H 0.146 0.854 33 H 0.404 0.596 34 H 0.164 0.836 35 H 0.396 0.604 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.123 0.877 43 H 0.013 0.987 44 H 0.252 0.748 45 H 0.047 0.953 46 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.326 13.181 10.849 17.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.026 3.974 3 C -0.220 4.220 4 C 0.153 3.847 5 O -0.290 6.290 6 N -0.230 5.230 7 C 0.006 3.994 8 C -0.202 4.202 9 C 0.349 3.651 10 O -0.405 6.405 11 N -0.347 5.347 12 C 0.075 3.925 13 C -0.155 4.155 14 C -0.162 4.162 15 C -0.151 4.151 16 C -0.134 4.134 17 H 0.091 0.909 18 C 0.014 3.986 19 N -0.321 5.321 20 C -0.344 4.344 21 H 0.095 0.905 22 C -0.207 4.207 23 N -0.571 5.571 24 Si 0.745 3.255 25 H -0.217 1.217 26 H -0.216 1.216 27 H -0.208 1.208 28 C 0.009 3.991 29 H 0.102 0.898 30 H 0.081 0.919 31 H 0.123 0.877 32 H 0.163 0.837 33 H 0.262 0.738 34 H 0.181 0.819 35 H 0.231 0.769 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.140 0.860 43 H 0.030 0.970 44 H 0.063 0.937 45 H 0.066 0.934 46 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 1.384 13.062 11.274 17.310 hybrid contribution -0.233 0.234 -1.476 1.512 sum 1.151 13.296 9.798 16.556 Atomic orbital electron populations 1.21120 0.88598 1.03844 1.04318 1.20382 0.97762 0.90560 0.88730 1.21978 0.93679 0.99562 1.06810 1.19352 0.87100 0.85195 0.93087 1.84701 1.76047 1.34181 1.34106 1.67154 1.42056 0.98237 1.15579 1.22741 0.90435 0.95194 0.91001 1.21022 0.95043 0.94959 1.09198 1.17781 0.87095 0.83120 0.77121 1.90730 1.13200 1.86950 1.49586 1.45933 1.10363 1.05392 1.72968 1.21758 0.93422 0.81333 0.95977 1.22619 0.98282 0.99675 0.94888 1.22765 0.98439 0.97562 0.97441 1.22679 1.00448 0.97587 0.94436 1.23007 0.97794 0.94346 0.98242 0.90880 1.22081 0.98086 0.89770 0.88669 1.44580 1.50886 1.35447 1.01192 1.19096 1.22091 1.13225 0.79969 0.90545 1.24747 0.99801 0.97970 0.98175 1.69593 1.33127 1.21643 1.32761 0.86071 0.77656 0.76870 0.84932 1.21677 1.21602 1.20753 1.21673 0.93137 0.95195 0.89062 0.89791 0.91877 0.87704 0.83667 0.73785 0.81890 0.76916 0.91263 0.90639 0.92281 0.92030 0.91174 0.91779 0.85977 0.96959 0.93691 0.93443 0.95499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.37 8.83 36.01 0.32 -1.05 16 2 C 0.03 0.41 5.95 -103.96 -0.62 -0.21 16 3 C -0.20 -2.08 9.70 -39.34 -0.38 -2.46 16 4 C 0.33 3.79 7.74 -16.96 -0.13 3.66 16 5 O -0.48 -4.55 13.55 -18.18 -0.25 -4.80 16 6 N -0.51 -6.62 10.37 -12.96 -0.13 -6.75 16 7 C 0.17 2.02 10.69 -17.14 -0.18 1.84 16 8 C -0.20 -2.60 5.89 -104.82 -0.62 -3.22 16 9 C 0.56 8.61 6.72 -12.44 -0.08 8.52 16 10 O -0.53 -9.09 11.08 5.29 0.06 -9.03 16 11 N -0.70 -10.56 5.20 -46.82 -0.24 -10.81 16 12 C 0.16 2.80 0.93 -129.89 -0.12 2.68 16 13 C -0.12 -1.80 5.66 -25.13 -0.14 -1.94 16 14 C -0.12 -1.65 6.92 -24.02 -0.17 -1.82 16 15 C -0.11 -1.69 6.48 -24.38 -0.16 -1.85 16 16 C -0.11 -2.01 3.62 -88.69 -0.32 -2.33 16 17 H 0.07 1.22 7.69 -51.93 -0.40 0.82 16 18 C 0.14 3.23 5.77 -3.23 -0.02 3.21 16 19 N -0.60 -15.05 3.39 -171.10 -0.58 -15.63 16 20 C -0.22 -5.96 10.34 -15.06 -0.16 -6.12 16 21 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 22 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 23 N -0.92 -26.16 10.08 55.49 0.56 -25.60 16 24 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 28 C 0.14 2.95 6.02 -3.23 -0.02 2.93 16 29 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.55 8.06 -51.93 -0.42 0.13 16 31 H 0.10 1.43 5.96 -51.93 -0.31 1.12 16 32 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 33 H 0.40 1.76 9.06 45.56 0.41 2.18 16 34 H 0.16 1.64 6.46 -52.48 -0.34 1.30 16 35 H 0.40 5.16 6.37 -40.82 -0.26 4.90 16 36 H 0.07 1.08 6.69 -51.93 -0.35 0.74 16 37 H 0.08 1.22 7.17 -51.92 -0.37 0.85 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.07 1.11 7.18 -51.93 -0.37 0.74 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.12 3.21 5.45 -51.93 -0.28 2.92 16 43 H 0.01 0.31 7.13 -51.93 -0.37 -0.07 16 44 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 45 H 0.05 1.08 6.84 -51.93 -0.36 0.72 16 46 H 0.03 0.60 7.12 -51.93 -0.37 0.23 16 LS Contribution 359.25 15.07 5.41 5.41 Total: -1.00 -32.59 359.25 -8.54 -41.12 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -5.44 Total: 7.78 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -2.90 Total: 1.42 kcal Atomic # 7 Polarization: -58.40 SS G_CDS: -0.40 Total: -58.80 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -0.19 Total: -13.83 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.59 -8.54 -41.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099019516.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.901 kcal (2) G-P(sol) polarization free energy of solvation -32.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds