Wall clock time and date at job start Tue Mar 31 2020 17:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37996 * 120.81946 * 2 1 4 4 C 1.39129 * 119.26300 * 180.26976 * 3 2 1 5 5 O 1.35494 * 119.52205 * 179.71997 * 4 3 2 6 6 N 1.32441 * 120.94780 * 359.70363 * 4 3 2 7 7 C 1.31630 * 121.79941 * 0.02562 * 6 4 3 8 8 C 1.39565 * 120.62896 * 359.97438 * 7 6 4 9 9 C 1.47615 * 120.49792 * 179.97438 * 8 7 6 10 10 O 1.21588 * 119.99890 * 173.90911 * 9 8 7 11 11 N 1.34773 * 120.00196 * 353.91152 * 9 8 7 12 12 C 1.46508 * 119.99823 * 180.02562 * 11 9 8 13 13 C 1.54185 * 112.24570 * 299.44825 * 12 11 9 14 14 C 1.54853 * 104.30155 * 261.21378 * 13 12 11 15 15 C 1.56225 * 103.17591 * 322.23646 * 14 13 12 16 16 C 1.54179 * 103.64873 * 37.34163 * 15 14 13 17 17 H 1.08995 * 111.62073 * 99.67172 * 16 15 14 18 18 C 1.53798 * 109.12429 * 223.52989 * 16 15 14 19 19 N 1.47222 * 106.35943 * 133.48846 * 18 16 15 20 20 C 1.36929 * 126.70423 * 148.74612 * 19 18 16 21 21 H 1.08007 * 120.00213 * 180.02562 * 20 19 18 22 22 C 1.38818 * 120.00188 * 0.02562 * 20 19 18 23 23 N 1.31620 * 119.99750 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00052 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47272 * 89.99649 * 24 22 20 26 26 H 1.48508 * 109.46779 * 209.99892 * 24 22 20 27 27 H 1.48501 * 109.47002 * 329.99485 * 24 22 20 28 28 C 1.47226 * 106.59340 * 328.75728 * 19 18 16 29 29 H 1.09001 * 109.46849 * 263.91219 * 1 2 3 30 30 H 1.08998 * 109.47175 * 23.91728 * 1 2 3 31 31 H 1.08995 * 109.46827 * 143.91519 * 1 2 3 32 32 H 1.07999 * 120.36850 * 359.97438 * 3 2 1 33 33 H 0.96704 * 114.00087 * 269.98058 * 5 4 3 34 34 H 1.08003 * 119.68493 * 179.97438 * 7 6 4 35 35 H 0.97000 * 120.00214 * 0.02562 * 11 9 8 36 36 H 1.08997 * 110.46686 * 19.92536 * 13 12 11 37 37 H 1.09007 * 110.46422 * 142.51252 * 13 12 11 38 38 H 1.08999 * 110.75459 * 80.18281 * 14 13 12 39 39 H 1.08996 * 110.75538 * 203.36793 * 14 13 12 40 40 H 1.08998 * 109.69663 * 279.36183 * 15 14 13 41 41 H 1.08997 * 111.85194 * 156.35716 * 15 14 13 42 42 H 1.09002 * 110.07732 * 252.70464 * 18 16 15 43 43 H 1.08998 * 110.08306 * 14.25990 * 18 16 15 44 44 H 0.96995 * 119.99617 * 180.02562 * 23 22 20 45 45 H 1.09003 * 110.07294 * 150.45721 * 28 19 18 46 46 H 1.08994 * 110.08236 * 272.01201 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6048 1.1473 -0.0057 5 8 4.3042 2.3078 -0.0115 6 7 4.2548 -0.0066 -0.0053 7 6 3.6205 -1.1600 0.0001 8 6 2.2256 -1.2043 0.0060 9 6 1.5172 -2.4994 0.0114 10 8 0.3073 -2.5301 0.1283 11 7 2.2115 -3.6478 -0.1131 12 6 1.5083 -4.9331 -0.1083 13 6 0.7367 -5.1714 1.2052 14 6 1.6699 -6.0858 2.0365 15 6 2.2865 -7.0370 0.9615 16 6 2.4872 -6.1211 -0.2625 17 1 3.5202 -5.7839 -0.3466 18 6 2.0286 -6.8643 -1.5285 19 7 1.1929 -5.9176 -2.2853 20 6 1.0548 -5.8547 -3.6461 21 1 0.4087 -5.1114 -4.0896 22 6 1.7450 -6.7463 -4.4559 23 7 2.5327 -7.6518 -3.9155 24 14 1.5571 -6.6600 -6.3123 25 1 2.5827 -5.7433 -6.8717 26 1 1.7362 -8.0157 -6.8915 27 1 0.2028 -6.1526 -6.6497 28 6 0.5350 -5.0514 -1.2931 29 1 -0.3633 -0.1090 1.0219 30 1 -0.3633 0.9394 -0.4166 31 1 -0.3633 -0.8305 -0.6053 32 1 1.6936 2.1314 -0.0004 33 1 4.5038 2.6423 -0.8966 34 1 4.1849 -2.0808 -0.0001 35 1 3.1767 -3.6234 -0.2060 36 1 0.5666 -4.2279 1.7238 37 1 -0.2098 -5.6737 1.0054 38 1 2.4545 -5.5017 2.5176 39 1 1.1006 -6.6485 2.7762 40 1 1.5811 -7.8348 0.7290 41 1 3.2401 -7.4528 1.2868 42 1 2.8932 -7.1586 -2.1235 43 1 1.4448 -7.7434 -1.2557 44 1 3.0153 -8.2745 -4.4813 45 1 0.3464 -4.0673 -1.7221 46 1 -0.4013 -5.5026 -0.9647 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099019516.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:08 Heat of formation + Delta-G solvation = -33.031131 kcal Electronic energy + Delta-G solvation = -29315.040530 eV Core-core repulsion = 25397.610510 eV Total energy + Delta-G solvation = -3917.430020 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.11590 -41.18737 -39.51575 -37.96794 -36.32163 -35.23890 -34.47868 -33.40201 -31.86655 -30.81687 -29.46245 -28.77316 -26.35684 -26.30773 -25.30259 -23.49318 -22.83772 -21.88105 -21.09150 -20.28095 -19.45555 -19.12598 -18.52428 -18.00985 -17.10341 -16.87721 -16.76129 -16.32881 -16.10314 -15.68262 -15.53099 -15.21233 -15.15542 -14.45761 -14.38081 -14.01232 -13.94675 -13.77144 -13.58201 -13.42744 -13.30642 -13.17546 -12.92017 -12.79638 -12.71220 -12.38539 -12.26648 -12.03073 -11.83235 -11.78629 -11.65822 -11.40949 -11.20820 -10.93459 -10.77871 -10.68009 -10.40068 -10.14112 -9.92995 -8.90730 -7.75564 -5.23689 -0.53395 0.06261 1.45145 1.46241 1.55154 1.73716 2.09135 2.46931 2.47729 2.71114 3.30029 3.38056 3.51321 3.58142 3.59652 3.66236 3.87547 3.93375 4.03370 4.18123 4.37957 4.42058 4.44854 4.49318 4.61144 4.63843 4.67396 4.75531 4.76813 4.82891 4.84305 4.98516 5.03994 5.07490 5.15599 5.24450 5.30074 5.31119 5.42297 5.45923 5.51721 5.61033 5.72519 5.81952 6.36814 6.50191 6.55315 6.74865 7.10561 7.21107 7.75570 8.43092 9.22119 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.011071 B = 0.003914 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.494595 B = 7151.296370 C = 8404.082333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.027 3.973 3 C -0.190 4.190 4 C 0.332 3.668 5 O -0.486 6.486 6 N -0.533 5.533 7 C 0.167 3.833 8 C -0.214 4.214 9 C 0.562 3.438 10 O -0.551 6.551 11 N -0.694 5.694 12 C 0.173 3.827 13 C -0.112 4.112 14 C -0.110 4.110 15 C -0.109 4.109 16 C -0.104 4.104 17 H 0.087 0.913 18 C 0.143 3.857 19 N -0.618 5.618 20 C -0.237 4.237 21 H 0.070 0.930 22 C -0.059 4.059 23 N -0.942 5.942 24 Si 0.977 3.023 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.276 1.276 28 C 0.138 3.862 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.175 0.825 33 H 0.426 0.574 34 H 0.180 0.820 35 H 0.407 0.593 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.056 0.944 41 H 0.088 0.912 42 H 0.093 0.907 43 H -0.010 1.010 44 H 0.249 0.751 45 H 0.029 0.971 46 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.263 14.919 12.026 19.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.019 3.981 3 C -0.211 4.211 4 C 0.154 3.846 5 O -0.298 6.298 6 N -0.253 5.253 7 C 0.009 3.991 8 C -0.220 4.220 9 C 0.350 3.650 10 O -0.431 6.431 11 N -0.345 5.345 12 C 0.086 3.914 13 C -0.150 4.150 14 C -0.147 4.147 15 C -0.146 4.146 16 C -0.124 4.124 17 H 0.106 0.894 18 C 0.018 3.982 19 N -0.342 5.342 20 C -0.366 4.366 21 H 0.088 0.912 22 C -0.252 4.252 23 N -0.591 5.591 24 Si 0.805 3.195 25 H -0.211 1.211 26 H -0.216 1.216 27 H -0.202 1.202 28 C 0.011 3.989 29 H 0.104 0.896 30 H 0.108 0.892 31 H 0.094 0.906 32 H 0.193 0.807 33 H 0.288 0.712 34 H 0.197 0.803 35 H 0.244 0.756 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.075 0.925 41 H 0.107 0.893 42 H 0.110 0.890 43 H 0.008 0.992 44 H 0.059 0.941 45 H 0.047 0.953 46 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 2.338 14.835 12.459 19.513 hybrid contribution -0.553 -0.214 -1.895 1.986 sum 1.785 14.621 10.563 18.126 Atomic orbital electron populations 1.21046 0.88258 1.04041 1.04007 1.20577 0.98167 0.90809 0.88580 1.22182 0.93307 1.00075 1.05556 1.19579 0.87674 0.85360 0.91941 1.84656 1.75776 1.33221 1.36115 1.67210 1.42609 0.98829 1.16603 1.22941 0.90094 0.95813 0.90274 1.20894 0.95531 0.94162 1.11397 1.18109 0.86885 0.83744 0.76246 1.90725 1.14335 1.87378 1.50627 1.45816 1.10894 1.04678 1.73141 1.21481 0.92628 0.82360 0.94961 1.22555 0.98116 1.00243 0.94123 1.22708 0.98386 0.96785 0.96833 1.22645 1.01566 0.96955 0.93474 1.22888 0.98308 0.94437 0.96805 0.89446 1.21910 0.96177 0.89667 0.90437 1.44832 1.51699 1.36470 1.01168 1.19350 1.22291 1.13357 0.81620 0.91181 1.25506 0.99707 0.97760 1.02189 1.69846 1.33525 1.21965 1.33808 0.85107 0.77769 0.76662 0.79959 1.21091 1.21605 1.20151 1.21748 0.93856 0.93352 0.89956 0.89641 0.89198 0.90593 0.80742 0.71184 0.80344 0.75614 0.91163 0.91881 0.90268 0.89944 0.92539 0.89345 0.88967 0.99220 0.94098 0.95278 0.96690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.50 8.83 71.24 0.63 -1.87 16 2 C 0.03 0.60 5.95 -19.43 -0.12 0.49 16 3 C -0.19 -3.48 9.70 22.43 0.22 -3.26 16 4 C 0.33 6.82 7.74 84.82 0.66 7.48 16 5 O -0.49 -7.81 13.55 -87.95 -1.19 -9.00 16 6 N -0.53 -12.84 10.37 -307.80 -3.19 -16.03 16 7 C 0.17 3.87 10.69 85.04 0.91 4.78 16 8 C -0.21 -5.48 5.89 -20.00 -0.12 -5.60 16 9 C 0.56 17.13 6.72 86.72 0.58 17.72 16 10 O -0.55 -19.34 11.08 -3.99 -0.04 -19.39 16 11 N -0.69 -20.71 5.20 -420.31 -2.18 -22.90 16 12 C 0.17 5.98 0.93 4.85 0.00 5.98 16 13 C -0.11 -3.35 5.66 31.63 0.18 -3.18 16 14 C -0.11 -2.61 6.92 32.35 0.22 -2.38 16 15 C -0.11 -3.04 6.48 32.11 0.21 -2.83 16 16 C -0.10 -3.64 3.62 -9.54 -0.03 -3.68 16 17 H 0.09 2.81 7.69 -2.39 -0.02 2.79 16 18 C 0.14 6.87 5.77 86.51 0.50 7.37 16 19 N -0.62 -32.35 3.39 -695.23 -2.36 -34.71 16 20 C -0.24 -13.58 10.34 84.04 0.87 -12.71 16 21 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 22 C -0.06 -3.33 5.49 84.86 0.47 -2.86 16 23 N -0.94 -54.89 10.08 21.65 0.22 -54.67 16 24 Si 0.98 45.75 29.55 68.60 2.03 47.78 16 25 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 26 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 27 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 28 C 0.14 6.17 6.02 86.51 0.52 6.69 16 29 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.09 1.38 8.06 -2.39 -0.02 1.36 16 31 H 0.08 2.11 5.96 -2.39 -0.01 2.09 16 32 H 0.18 2.08 8.06 -2.91 -0.02 2.06 16 33 H 0.43 2.48 9.06 -74.05 -0.67 1.81 16 34 H 0.18 3.32 6.46 -2.91 -0.02 3.30 16 35 H 0.41 10.16 6.37 -92.71 -0.59 9.57 16 36 H 0.07 2.12 6.69 -2.39 -0.02 2.10 16 37 H 0.06 2.04 7.17 -2.38 -0.02 2.03 16 38 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.06 1.75 7.18 -2.39 -0.02 1.73 16 41 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.09 5.02 5.45 -2.39 -0.01 5.01 16 43 H -0.01 -0.52 7.13 -2.39 -0.02 -0.53 16 44 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 45 H 0.03 1.38 6.84 -2.39 -0.02 1.37 16 46 H 0.02 0.71 7.12 -2.39 -0.02 0.70 16 Total: -1.00 -72.77 359.25 -1.24 -74.01 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: -0.22 Total: 22.75 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: 5.70 Total: 12.15 kcal Atomic # 7 Polarization: -120.79 SS G_CDS: -7.51 Total: -128.31 kcal Atomic # 8 Polarization: -27.15 SS G_CDS: -1.24 Total: -28.39 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -72.77 -1.24 -74.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099019516.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.982 kcal (2) G-P(sol) polarization free energy of solvation -72.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds