Wall clock time and date at job start Tue Mar 31 2020 16:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38352 * 119.40801 * 2 1 4 4 C 1.38345 * 119.45621 * 179.76434 * 3 2 1 5 5 C 1.39987 * 118.34978 * 0.49472 * 4 3 2 6 6 C 1.47521 * 120.59402 * 179.78263 * 5 4 3 7 7 O 1.21595 * 120.00055 * 179.72178 * 6 5 4 8 8 N 1.34781 * 120.00457 * 359.71994 * 6 5 4 9 9 C 1.46501 * 120.00000 * 180.02562 * 8 6 5 10 10 C 1.54317 * 111.69224 * 298.98322 * 9 8 6 11 11 C 1.55058 * 103.93930 * 262.79168 * 10 9 8 12 12 C 1.55059 * 102.10782 * 319.94452 * 11 10 9 13 13 C 1.54321 * 103.93612 * 40.06043 * 12 11 10 14 14 H 1.08998 * 111.02419 * 96.80549 * 13 12 11 15 15 C 1.53778 * 109.78885 * 221.69053 * 13 12 11 16 16 N 1.47213 * 106.37994 * 95.21401 * 15 13 12 17 17 C 1.36946 * 126.69984 * 211.28476 * 16 15 13 18 18 H 1.07994 * 120.00048 * 13.67241 * 17 16 15 19 19 C 1.38813 * 119.99840 * 193.67458 * 17 16 15 20 20 N 1.31624 * 119.99888 * 8.94200 * 19 17 16 21 21 Si 1.86795 * 119.99997 * 188.95091 * 19 17 16 22 22 H 1.48494 * 109.47454 * 94.98035 * 21 19 17 23 23 H 1.48506 * 109.46783 * 214.97846 * 21 19 17 24 24 H 1.48506 * 109.47028 * 334.97461 * 21 19 17 25 25 C 1.48669 * 107.09388 * 30.74545 * 16 15 13 26 26 C 1.40270 * 118.80556 * 359.50769 * 5 4 3 27 27 O 1.35422 * 119.80051 * 180.23047 * 26 5 4 28 28 N 1.31887 * 119.40923 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.47102 * 269.98182 * 1 2 3 30 30 H 1.08999 * 109.47045 * 29.98529 * 1 2 3 31 31 H 1.09008 * 109.46831 * 149.97912 * 1 2 3 32 32 H 1.07997 * 120.27589 * 0.02562 * 3 2 1 33 33 H 1.08003 * 120.82051 * 180.25502 * 4 3 2 34 34 H 0.96997 * 119.99742 * 359.72364 * 8 6 5 35 35 H 1.09001 * 110.53566 * 21.40383 * 10 9 8 36 36 H 1.08996 * 110.53592 * 144.17451 * 10 9 8 37 37 H 1.08998 * 110.90477 * 78.15054 * 11 10 9 38 38 H 1.09002 * 110.90511 * 201.71015 * 11 10 9 39 39 H 1.09001 * 110.52753 * 158.66745 * 12 11 10 40 40 H 1.09001 * 110.53763 * 281.30206 * 12 11 10 41 41 H 1.08997 * 110.07579 * 214.44174 * 15 13 12 42 42 H 1.08995 * 110.07436 * 335.98476 * 15 13 12 43 43 H 0.97001 * 119.99583 * 179.97438 * 20 19 17 44 44 H 1.09000 * 110.91005 * 210.53060 * 25 16 15 45 45 H 1.08999 * 109.95046 * 88.51862 * 25 16 15 46 46 H 0.96705 * 114.00092 * 89.99736 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1863 1.2052 0.0000 4 6 3.5697 1.2064 0.0050 5 6 4.2355 -0.0250 -0.0008 6 6 5.7096 -0.0815 -0.0007 7 8 6.2769 -1.1570 -0.0007 8 7 6.4278 1.0591 -0.0008 9 6 7.8918 1.0028 -0.0013 10 6 8.4355 0.2865 1.2527 11 6 8.7941 1.4451 2.2188 12 6 9.4158 2.4902 1.2567 13 6 8.5212 2.4181 0.0013 14 1 7.7607 3.1988 0.0177 15 6 9.3935 2.4765 -1.2637 16 7 9.6275 1.0815 -1.6715 17 6 10.7381 0.5888 -2.3033 18 1 11.6383 1.1831 -2.3548 19 6 10.7067 -0.6746 -2.8776 20 7 9.5672 -1.3266 -2.9716 21 14 12.2816 -1.4494 -3.5167 22 1 12.8618 -2.3276 -2.4692 23 1 11.9809 -2.2552 -4.7274 24 1 13.2541 -0.3814 -3.8619 25 6 8.4335 0.2988 -1.2565 26 6 3.4758 -1.2041 -0.0008 27 8 4.0991 -2.4063 -0.0016 28 7 2.1546 -1.1489 -0.0005 29 1 -0.3633 -0.0003 1.0276 30 1 -0.3633 0.8901 -0.5136 31 1 -0.3633 -0.8899 -0.5142 32 1 1.6411 2.1375 0.0004 33 1 4.1223 2.1344 0.0092 34 1 5.9754 1.9170 -0.0049 35 1 7.6688 -0.3529 1.6905 36 1 9.3241 -0.2946 1.0061 37 1 7.8997 1.8420 2.6989 38 1 9.5211 1.1200 2.9631 39 1 9.3765 3.4863 1.6974 40 1 10.4435 2.2213 1.0125 41 1 8.8706 3.0147 -2.0542 42 1 10.3421 2.9655 -1.0418 43 1 9.5452 -2.2093 -3.3732 44 1 8.7056 -0.7299 -1.0203 45 1 7.6842 0.3159 -2.0478 46 1 4.2807 -2.7558 0.8816 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099051102.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:13 Heat of formation + Delta-G solvation = -9.441863 kcal Electronic energy + Delta-G solvation = -29423.333018 eV Core-core repulsion = 25506.925906 eV Total energy + Delta-G solvation = -3916.407112 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.93418 -39.80012 -37.88723 -37.10587 -34.28844 -33.76088 -32.72304 -31.74872 -31.48536 -29.29813 -28.33697 -27.40640 -24.69262 -24.42528 -23.39893 -23.13488 -21.25828 -20.57526 -19.75494 -18.82184 -18.57274 -17.42958 -16.92024 -16.65494 -15.84302 -15.59534 -14.90048 -14.72121 -14.48279 -14.30531 -13.99628 -13.97107 -13.60338 -13.46807 -13.31683 -13.13177 -12.77042 -12.49719 -12.38950 -12.18591 -11.91932 -11.58574 -11.23244 -10.93807 -10.89460 -10.71739 -10.57949 -10.54115 -10.30556 -10.14480 -10.07864 -9.97166 -9.91599 -9.85445 -9.65075 -9.21620 -8.92907 -8.52874 -8.46519 -6.74949 -5.66445 -3.02793 0.50817 0.94656 2.98473 3.32525 3.44471 3.48841 3.50443 3.52245 3.79646 4.34437 4.44514 4.54701 4.66068 4.78346 4.89340 5.06667 5.13805 5.19370 5.26695 5.27819 5.34900 5.54138 5.60349 5.66232 5.73355 5.77362 5.82521 5.87872 5.93768 6.03549 6.07732 6.13859 6.25966 6.28493 6.33925 6.51291 6.66236 6.69915 6.80399 6.85721 7.08815 7.46782 7.52868 7.69951 7.75277 7.84862 7.97846 8.31564 8.62941 9.21850 9.85618 10.56406 11.45710 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.014476 B = 0.003675 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.807945 B = 7617.972564 C = 8648.450914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.168 3.832 3 C -0.194 4.194 4 C -0.028 4.028 5 C -0.201 4.201 6 C 0.556 3.444 7 O -0.497 6.497 8 N -0.708 5.708 9 C 0.148 3.852 10 C -0.111 4.111 11 C -0.125 4.125 12 C -0.111 4.111 13 C -0.106 4.106 14 H 0.073 0.927 15 C 0.140 3.860 16 N -0.596 5.596 17 C -0.235 4.235 18 H 0.075 0.925 19 C -0.003 4.003 20 N -0.906 5.906 21 Si 0.908 3.092 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.180 3.820 26 C 0.375 3.625 27 O -0.455 6.455 28 N -0.511 5.511 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.143 0.857 33 H 0.142 0.858 34 H 0.388 0.612 35 H 0.064 0.936 36 H 0.081 0.919 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.074 0.926 41 H 0.013 0.987 42 H 0.046 0.954 43 H 0.254 0.746 44 H 0.088 0.912 45 H 0.021 0.979 46 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.781 8.857 11.699 21.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.029 3.971 3 C -0.214 4.214 4 C -0.054 4.054 5 C -0.208 4.208 6 C 0.340 3.660 7 O -0.372 6.372 8 N -0.360 5.360 9 C 0.062 3.938 10 C -0.149 4.149 11 C -0.163 4.163 12 C -0.149 4.149 13 C -0.126 4.126 14 H 0.091 0.909 15 C 0.013 3.987 16 N -0.321 5.321 17 C -0.364 4.364 18 H 0.093 0.907 19 C -0.201 4.201 20 N -0.551 5.551 21 Si 0.739 3.261 22 H -0.216 1.216 23 H -0.218 1.218 24 H -0.206 1.206 25 C 0.054 3.946 26 C 0.195 3.805 27 O -0.262 6.262 28 N -0.231 5.231 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.160 0.840 33 H 0.159 0.841 34 H 0.223 0.777 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.093 0.907 41 H 0.031 0.969 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.106 0.894 45 H 0.039 0.961 46 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -15.685 7.084 10.952 20.400 hybrid contribution 0.964 0.732 -0.044 1.211 sum -14.721 7.816 10.907 19.919 Atomic orbital electron populations 1.20806 0.88326 1.03932 1.03395 1.21232 0.96979 0.87314 0.91529 1.21860 0.94492 0.99475 1.05524 1.21731 0.94483 0.97133 0.92088 1.21309 0.95672 0.94254 1.09560 1.17705 0.85408 0.84936 0.77920 1.90884 1.71167 1.28069 1.47034 1.45911 1.07046 1.07567 1.75495 1.22093 0.77017 0.95810 0.98916 1.22661 1.01338 0.96848 0.94081 1.22600 0.99571 0.96671 0.97408 1.22443 0.99852 0.98029 0.94534 1.22809 0.97519 0.95132 0.97158 0.90916 1.21305 0.96160 0.89006 0.92227 1.44748 1.18100 1.01335 1.67911 1.18959 0.89011 0.99853 1.28537 0.90692 1.24900 0.96865 0.98461 0.99839 1.69964 1.23124 1.13905 1.48156 0.86168 0.82580 0.79238 0.78141 1.21571 1.21763 1.20617 1.21639 0.87767 0.96199 0.89005 1.19163 0.85934 0.85369 0.90081 1.84771 1.76268 1.31660 1.33528 1.67136 1.09514 1.30383 1.16055 0.89960 0.90232 0.90113 0.83963 0.84062 0.77727 0.91731 0.90034 0.92468 0.92075 0.92454 0.90700 0.96899 0.93608 0.93556 0.89401 0.96136 0.73629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 10.16 36.00 0.37 -0.36 16 2 C 0.17 1.76 6.78 -82.53 -0.56 1.20 16 3 C -0.19 -1.73 9.71 -39.50 -0.38 -2.11 16 4 C -0.03 -0.30 9.64 -38.89 -0.37 -0.67 16 5 C -0.20 -2.91 5.90 -104.69 -0.62 -3.53 16 6 C 0.56 9.75 7.06 -12.47 -0.09 9.67 16 7 O -0.50 -10.75 13.11 -16.49 -0.22 -10.97 16 8 N -0.71 -11.28 5.15 -46.71 -0.24 -11.52 16 9 C 0.15 2.79 0.93 -129.73 -0.12 2.66 16 10 C -0.11 -2.02 5.50 -24.95 -0.14 -2.16 16 11 C -0.12 -1.80 6.92 -24.56 -0.17 -1.97 16 12 C -0.11 -1.64 6.25 -24.95 -0.16 -1.80 16 13 C -0.11 -1.75 3.63 -88.53 -0.32 -2.07 16 14 H 0.07 0.99 7.71 -51.93 -0.40 0.59 16 15 C 0.14 2.86 6.63 -3.25 -0.02 2.84 16 16 N -0.60 -15.35 3.42 -169.94 -0.58 -15.93 16 17 C -0.24 -6.64 10.28 -15.05 -0.15 -6.80 16 18 H 0.08 2.04 7.84 -52.49 -0.41 1.62 16 19 C 0.00 -0.08 5.39 -17.43 -0.09 -0.17 16 20 N -0.91 -27.95 10.82 55.49 0.60 -27.35 16 21 Si 0.91 22.63 29.56 -169.99 -5.03 17.60 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 25 C 0.18 4.53 3.67 -2.44 -0.01 4.52 16 26 C 0.37 5.71 7.77 -16.61 -0.13 5.58 16 27 O -0.46 -7.31 11.66 -39.73 -0.46 -7.78 16 28 N -0.51 -7.04 10.28 -9.21 -0.09 -7.13 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.36 8.07 -51.93 -0.42 -0.06 16 31 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 32 H 0.14 0.78 8.06 -52.49 -0.42 0.35 16 33 H 0.14 1.08 6.52 -52.48 -0.34 0.73 16 34 H 0.39 4.74 6.39 -40.82 -0.26 4.48 16 35 H 0.06 1.19 6.64 -51.93 -0.34 0.85 16 36 H 0.08 1.73 7.57 -51.93 -0.39 1.34 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 1.24 7.62 -51.93 -0.40 0.85 16 41 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.05 0.90 7.63 -51.93 -0.40 0.50 16 43 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 44 H 0.09 2.58 6.22 -51.93 -0.32 2.25 16 45 H 0.02 0.59 8.05 -51.93 -0.42 0.17 16 46 H 0.40 4.66 9.06 45.56 0.41 5.08 16 LS Contribution 366.08 15.07 5.52 5.52 Total: -1.00 -36.40 366.08 -9.26 -45.66 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -5.79 Total: 7.05 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: -2.97 Total: 4.84 kcal Atomic # 7 Polarization: -61.61 SS G_CDS: -0.32 Total: -61.93 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.68 Total: -18.75 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.03 Total: 17.60 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.40 -9.26 -45.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099051102.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.221 kcal (2) G-P(sol) polarization free energy of solvation -36.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds