Wall clock time and date at job start Tue Mar 31 2020 16:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38352 * 119.40801 * 2 1 4 4 C 1.38345 * 119.45621 * 179.76434 * 3 2 1 5 5 C 1.39987 * 118.34978 * 0.49472 * 4 3 2 6 6 C 1.47521 * 120.59402 * 179.78263 * 5 4 3 7 7 O 1.21595 * 120.00055 * 179.72178 * 6 5 4 8 8 N 1.34781 * 120.00457 * 359.71994 * 6 5 4 9 9 C 1.46501 * 120.00000 * 180.02562 * 8 6 5 10 10 C 1.54317 * 111.69224 * 298.98322 * 9 8 6 11 11 C 1.55058 * 103.93930 * 262.79168 * 10 9 8 12 12 C 1.55059 * 102.10782 * 319.94452 * 11 10 9 13 13 C 1.54321 * 103.93612 * 40.06043 * 12 11 10 14 14 H 1.08998 * 111.02419 * 96.80549 * 13 12 11 15 15 C 1.53778 * 109.78885 * 221.69053 * 13 12 11 16 16 N 1.47213 * 106.37994 * 95.21401 * 15 13 12 17 17 C 1.36946 * 126.69984 * 211.28476 * 16 15 13 18 18 H 1.07994 * 120.00048 * 13.67241 * 17 16 15 19 19 C 1.38813 * 119.99840 * 193.67458 * 17 16 15 20 20 N 1.31624 * 119.99888 * 8.94200 * 19 17 16 21 21 Si 1.86795 * 119.99997 * 188.95091 * 19 17 16 22 22 H 1.48494 * 109.47454 * 94.98035 * 21 19 17 23 23 H 1.48506 * 109.46783 * 214.97846 * 21 19 17 24 24 H 1.48506 * 109.47028 * 334.97461 * 21 19 17 25 25 C 1.48669 * 107.09388 * 30.74545 * 16 15 13 26 26 C 1.40270 * 118.80556 * 359.50769 * 5 4 3 27 27 O 1.35422 * 119.80051 * 180.23047 * 26 5 4 28 28 N 1.31887 * 119.40923 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.47102 * 269.98182 * 1 2 3 30 30 H 1.08999 * 109.47045 * 29.98529 * 1 2 3 31 31 H 1.09008 * 109.46831 * 149.97912 * 1 2 3 32 32 H 1.07997 * 120.27589 * 0.02562 * 3 2 1 33 33 H 1.08003 * 120.82051 * 180.25502 * 4 3 2 34 34 H 0.96997 * 119.99742 * 359.72364 * 8 6 5 35 35 H 1.09001 * 110.53566 * 21.40383 * 10 9 8 36 36 H 1.08996 * 110.53592 * 144.17451 * 10 9 8 37 37 H 1.08998 * 110.90477 * 78.15054 * 11 10 9 38 38 H 1.09002 * 110.90511 * 201.71015 * 11 10 9 39 39 H 1.09001 * 110.52753 * 158.66745 * 12 11 10 40 40 H 1.09001 * 110.53763 * 281.30206 * 12 11 10 41 41 H 1.08997 * 110.07579 * 214.44174 * 15 13 12 42 42 H 1.08995 * 110.07436 * 335.98476 * 15 13 12 43 43 H 0.97001 * 119.99583 * 179.97438 * 20 19 17 44 44 H 1.09000 * 110.91005 * 210.53060 * 25 16 15 45 45 H 1.08999 * 109.95046 * 88.51862 * 25 16 15 46 46 H 0.96705 * 114.00092 * 89.99736 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1863 1.2052 0.0000 4 6 3.5697 1.2064 0.0050 5 6 4.2355 -0.0250 -0.0008 6 6 5.7096 -0.0815 -0.0007 7 8 6.2769 -1.1570 -0.0007 8 7 6.4278 1.0591 -0.0008 9 6 7.8918 1.0028 -0.0013 10 6 8.4355 0.2865 1.2527 11 6 8.7941 1.4451 2.2188 12 6 9.4158 2.4902 1.2567 13 6 8.5212 2.4181 0.0013 14 1 7.7607 3.1988 0.0177 15 6 9.3935 2.4765 -1.2637 16 7 9.6275 1.0815 -1.6715 17 6 10.7381 0.5888 -2.3033 18 1 11.6383 1.1831 -2.3548 19 6 10.7067 -0.6746 -2.8776 20 7 9.5672 -1.3266 -2.9716 21 14 12.2816 -1.4494 -3.5167 22 1 12.8618 -2.3276 -2.4692 23 1 11.9809 -2.2552 -4.7274 24 1 13.2541 -0.3814 -3.8619 25 6 8.4335 0.2988 -1.2565 26 6 3.4758 -1.2041 -0.0008 27 8 4.0991 -2.4063 -0.0016 28 7 2.1546 -1.1489 -0.0005 29 1 -0.3633 -0.0003 1.0276 30 1 -0.3633 0.8901 -0.5136 31 1 -0.3633 -0.8899 -0.5142 32 1 1.6411 2.1375 0.0004 33 1 4.1223 2.1344 0.0092 34 1 5.9754 1.9170 -0.0049 35 1 7.6688 -0.3529 1.6905 36 1 9.3241 -0.2946 1.0061 37 1 7.8997 1.8420 2.6989 38 1 9.5211 1.1200 2.9631 39 1 9.3765 3.4863 1.6974 40 1 10.4435 2.2213 1.0125 41 1 8.8706 3.0147 -2.0542 42 1 10.3421 2.9655 -1.0418 43 1 9.5452 -2.2093 -3.3732 44 1 8.7056 -0.7299 -1.0203 45 1 7.6842 0.3159 -2.0478 46 1 4.2807 -2.7558 0.8816 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099051102.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:12 Heat of formation + Delta-G solvation = -38.713670 kcal Electronic energy + Delta-G solvation = -29424.602339 eV Core-core repulsion = 25506.925906 eV Total energy + Delta-G solvation = -3917.676433 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.05056 -41.13357 -39.27449 -38.22430 -36.13744 -35.03514 -33.78286 -33.46930 -32.59932 -30.80947 -29.79753 -28.62136 -26.31709 -26.24146 -24.48001 -24.03933 -22.64376 -22.23366 -21.04761 -20.30715 -19.68331 -18.91781 -18.48439 -17.95208 -17.10723 -16.86841 -16.45494 -16.10062 -15.79679 -15.55897 -15.33503 -15.31117 -14.93352 -14.80768 -14.72883 -14.31205 -14.18170 -13.66342 -13.56732 -13.12691 -12.99358 -12.97735 -12.85797 -12.70146 -12.61823 -12.37051 -12.10837 -12.02574 -11.98210 -11.67064 -11.62858 -11.56611 -11.42534 -11.04914 -10.97905 -10.69575 -10.41894 -10.05535 -9.77656 -8.87724 -7.88534 -5.26664 -0.45493 0.08881 1.40760 1.44036 1.53159 1.84882 2.07691 2.47099 2.50138 2.74541 3.29628 3.41422 3.52147 3.67423 3.70066 3.77278 3.82685 3.91938 3.98590 4.31728 4.41211 4.43136 4.44323 4.51457 4.62234 4.68633 4.70183 4.78790 4.82397 4.92445 4.98462 5.00577 5.05191 5.08831 5.12997 5.15630 5.26841 5.30572 5.40083 5.46436 5.53309 5.57384 5.68462 5.83809 6.18384 6.50982 6.63463 6.84531 7.00312 7.33750 7.72876 8.43887 9.22637 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.014476 B = 0.003675 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.807945 B = 7617.972564 C = 8648.450914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.161 3.839 3 C -0.175 4.175 4 C -0.019 4.019 5 C -0.226 4.226 6 C 0.552 3.448 7 O -0.553 6.553 8 N -0.693 5.693 9 C 0.158 3.842 10 C -0.110 4.110 11 C -0.109 4.109 12 C -0.105 4.105 13 C -0.092 4.092 14 H 0.122 0.878 15 C 0.131 3.869 16 N -0.619 5.619 17 C -0.239 4.239 18 H 0.086 0.914 19 C -0.069 4.069 20 N -0.947 5.947 21 Si 0.977 3.023 22 H -0.289 1.289 23 H -0.298 1.298 24 H -0.258 1.258 25 C 0.198 3.802 26 C 0.348 3.652 27 O -0.485 6.485 28 N -0.536 5.536 29 H 0.100 0.900 30 H 0.111 0.889 31 H 0.069 0.931 32 H 0.193 0.807 33 H 0.177 0.823 34 H 0.411 0.589 35 H 0.054 0.946 36 H 0.035 0.965 37 H 0.089 0.911 38 H 0.072 0.928 39 H 0.103 0.897 40 H 0.051 0.949 41 H 0.016 0.984 42 H 0.059 0.941 43 H 0.243 0.757 44 H 0.031 0.969 45 H -0.029 1.029 46 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.381 13.654 13.548 25.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.023 3.977 3 C -0.195 4.195 4 C -0.045 4.045 5 C -0.233 4.233 6 C 0.339 3.661 7 O -0.431 6.431 8 N -0.347 5.347 9 C 0.070 3.930 10 C -0.149 4.149 11 C -0.147 4.147 12 C -0.142 4.142 13 C -0.112 4.112 14 H 0.140 0.860 15 C 0.006 3.994 16 N -0.345 5.345 17 C -0.368 4.368 18 H 0.104 0.896 19 C -0.263 4.263 20 N -0.595 5.595 21 Si 0.805 3.195 22 H -0.216 1.216 23 H -0.225 1.225 24 H -0.182 1.182 25 C 0.071 3.929 26 C 0.169 3.831 27 O -0.294 6.294 28 N -0.258 5.258 29 H 0.119 0.881 30 H 0.129 0.871 31 H 0.088 0.912 32 H 0.210 0.790 33 H 0.194 0.806 34 H 0.250 0.750 35 H 0.073 0.927 36 H 0.054 0.946 37 H 0.108 0.892 38 H 0.091 0.909 39 H 0.121 0.879 40 H 0.070 0.930 41 H 0.034 0.966 42 H 0.077 0.923 43 H 0.052 0.948 44 H 0.049 0.951 45 H -0.011 1.011 46 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -17.299 11.974 12.826 24.640 hybrid contribution 1.329 -0.720 -0.651 1.646 sum -15.969 11.254 12.175 23.019 Atomic orbital electron populations 1.20960 0.85478 1.04971 1.04829 1.22089 0.98874 0.87105 0.89644 1.22376 0.93798 1.00693 1.02591 1.22141 0.95507 0.96490 0.90316 1.21082 0.93439 0.95960 1.12772 1.18283 0.86955 0.84389 0.76508 1.90862 1.72591 1.30177 1.49502 1.45643 1.05715 1.08432 1.74870 1.21725 0.78736 0.96970 0.95523 1.22522 0.99080 0.98089 0.95185 1.22562 1.01213 0.94353 0.96552 1.22431 0.97916 1.00392 0.93491 1.22832 0.98065 0.94303 0.96000 0.86040 1.21600 0.97830 0.85942 0.94044 1.45059 1.17503 1.04090 1.67840 1.19432 0.90242 0.99924 1.27211 0.89604 1.25808 0.99954 0.99363 1.01135 1.70239 1.25628 1.13675 1.49967 0.85086 0.79069 0.78461 0.76913 1.21638 1.22520 1.18240 1.21194 0.86694 0.94535 0.90435 1.19393 0.86810 0.85173 0.91714 1.84712 1.76870 1.32929 1.34861 1.67170 1.08751 1.32550 1.17288 0.88123 0.87071 0.91199 0.79020 0.80567 0.75001 0.92715 0.94615 0.89235 0.90940 0.87888 0.93048 0.96619 0.92272 0.94830 0.95059 1.01111 0.72571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 10.16 71.23 0.72 -0.33 16 2 C 0.16 2.96 6.78 42.58 0.29 3.25 16 3 C -0.18 -2.35 9.71 22.32 0.22 -2.13 16 4 C -0.02 -0.34 9.64 22.72 0.22 -0.12 16 5 C -0.23 -6.56 5.90 -19.91 -0.12 -6.68 16 6 C 0.55 20.24 7.06 86.69 0.61 20.85 16 7 O -0.55 -26.33 13.11 16.80 0.22 -26.11 16 8 N -0.69 -21.63 5.15 -419.94 -2.16 -23.79 16 9 C 0.16 5.99 0.93 4.96 0.00 6.00 16 10 C -0.11 -4.13 5.50 31.75 0.17 -3.96 16 11 C -0.11 -2.82 6.92 32.00 0.22 -2.60 16 12 C -0.10 -2.68 6.25 31.75 0.20 -2.48 16 13 C -0.09 -2.77 3.63 -9.44 -0.03 -2.81 16 14 H 0.12 2.55 7.71 -2.39 -0.02 2.53 16 15 C 0.13 5.20 6.63 86.51 0.57 5.77 16 16 N -0.62 -33.08 3.42 -691.58 -2.36 -35.44 16 17 C -0.24 -13.94 10.28 84.03 0.86 -13.08 16 18 H 0.09 4.70 7.84 -2.91 -0.02 4.67 16 19 C -0.07 -4.21 5.39 84.86 0.46 -3.75 16 20 N -0.95 -62.98 10.82 21.65 0.23 -62.75 16 21 Si 0.98 48.57 29.56 68.60 2.03 50.59 16 22 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 23 H -0.30 -15.04 7.11 99.48 0.71 -14.33 16 24 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 25 C 0.20 10.68 3.67 86.22 0.32 10.99 16 26 C 0.35 11.17 7.77 85.13 0.66 11.83 16 27 O -0.48 -17.38 11.66 -66.35 -0.77 -18.15 16 28 N -0.54 -14.84 10.28 -296.08 -3.04 -17.88 16 29 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.11 0.44 8.07 -2.39 -0.02 0.42 16 31 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 32 H 0.19 0.71 8.06 -2.91 -0.02 0.68 16 33 H 0.18 1.75 6.52 -2.91 -0.02 1.73 16 34 H 0.41 8.66 6.39 -92.71 -0.59 8.06 16 35 H 0.05 2.13 6.64 -2.39 -0.02 2.11 16 36 H 0.03 1.63 7.57 -2.39 -0.02 1.62 16 37 H 0.09 1.81 8.14 -2.39 -0.02 1.80 16 38 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.05 1.58 7.62 -2.39 -0.02 1.56 16 41 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.06 2.19 7.63 -2.39 -0.02 2.17 16 43 H 0.24 15.92 8.31 -92.71 -0.77 15.14 16 44 H 0.03 2.02 6.22 -2.39 -0.01 2.00 16 45 H -0.03 -1.81 8.05 -2.39 -0.02 -1.83 16 46 H 0.41 11.29 9.06 -74.05 -0.67 10.62 16 Total: -1.00 -92.03 366.08 -0.72 -92.75 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -0.24 Total: 20.02 kcal Atomic # 6 Polarization: 15.39 SS G_CDS: 5.38 Total: 20.77 kcal Atomic # 7 Polarization: -132.53 SS G_CDS: -7.33 Total: -139.87 kcal Atomic # 8 Polarization: -43.71 SS G_CDS: -0.55 Total: -44.26 kcal Atomic # 14 Polarization: 48.57 SS G_CDS: 2.03 Total: 50.59 kcal Total: -92.03 -0.72 -92.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099051102.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.037 kcal (2) G-P(sol) polarization free energy of solvation -92.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds