Wall clock time and date at job start Tue Mar 31 2020 17:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37994 * 120.82185 * 2 1 4 4 C 1.39134 * 119.26650 * 180.27479 * 3 2 1 5 5 O 1.35497 * 119.52729 * 179.70318 * 4 3 2 6 6 N 1.32435 * 120.94483 * 359.72180 * 4 3 2 7 7 C 1.31640 * 121.80359 * 0.02562 * 6 4 3 8 8 C 1.39565 * 120.62338 * 359.97438 * 7 6 4 9 9 C 1.47618 * 120.49661 * 180.02562 * 8 7 6 10 10 O 1.21583 * 119.99573 * 173.71057 * 9 8 7 11 11 N 1.34777 * 120.00102 * 353.71760 * 9 8 7 12 12 C 1.46500 * 120.00065 * 180.27450 * 11 9 8 13 13 C 1.52990 * 109.47136 * 179.72094 * 12 11 9 14 14 C 1.50704 * 109.47134 * 179.97438 * 13 12 11 15 15 C 1.29453 * 117.69536 * 95.00186 * 14 13 12 16 16 C 1.50321 * 123.65437 * 180.86207 * 15 14 13 17 17 N 1.47006 * 109.16426 * 349.01925 * 16 15 14 18 18 C 1.36932 * 121.37779 * 222.96846 * 17 16 15 19 19 H 1.08005 * 120.00275 * 152.94292 * 18 17 16 20 20 C 1.38816 * 120.00271 * 332.94559 * 18 17 16 21 21 N 1.31620 * 119.99580 * 349.22459 * 20 18 17 22 22 Si 1.86792 * 120.00409 * 169.22071 * 20 18 17 23 23 H 1.48495 * 109.47045 * 90.00145 * 22 20 18 24 24 H 1.48501 * 109.47406 * 210.00079 * 22 20 18 25 25 H 1.48505 * 109.47177 * 330.00139 * 22 20 18 26 26 C 1.47338 * 117.24897 * 42.94908 * 17 16 15 27 27 C 1.49973 * 117.69462 * 274.74097 * 14 13 12 28 28 H 1.09003 * 109.46400 * 263.99563 * 1 2 3 29 29 H 1.08998 * 109.46984 * 23.98748 * 1 2 3 30 30 H 1.08998 * 109.47338 * 143.99761 * 1 2 3 31 31 H 1.07996 * 120.37266 * 359.97438 * 3 2 1 32 32 H 0.96704 * 113.99938 * 270.01935 * 5 4 3 33 33 H 1.07998 * 119.69093 * 179.97438 * 7 6 4 34 34 H 0.96998 * 119.99896 * 359.97438 * 11 9 8 35 35 H 1.08998 * 109.46934 * 299.72812 * 12 11 9 36 36 H 1.09002 * 109.46982 * 59.71805 * 12 11 9 37 37 H 1.08999 * 109.47282 * 299.99622 * 13 12 11 38 38 H 1.08997 * 109.47147 * 60.00370 * 13 12 11 39 39 H 1.08005 * 118.17370 * 0.88108 * 15 14 13 40 40 H 1.09004 * 109.52440 * 108.92383 * 16 15 14 41 41 H 1.08994 * 109.52104 * 229.11528 * 16 15 14 42 42 H 0.96995 * 120.00217 * 179.97438 * 21 20 18 43 43 H 1.09002 * 109.78277 * 57.81376 * 26 17 16 44 44 H 1.09001 * 109.77750 * 178.61754 * 26 17 16 45 45 H 1.08996 * 109.31652 * 281.29086 * 27 14 13 46 46 H 1.08997 * 109.30952 * 40.71752 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1850 0.0000 4 6 3.6049 1.1473 -0.0058 5 8 4.3044 2.3077 -0.0120 6 7 4.2548 -0.0066 -0.0058 7 6 3.6205 -1.1601 -0.0009 8 6 2.2256 -1.2044 0.0052 9 6 1.5171 -2.4994 0.0113 10 8 0.3077 -2.5301 0.1318 11 7 2.2110 -3.6477 -0.1166 12 6 1.5074 -4.9327 -0.1166 13 6 2.5192 -6.0682 -0.2816 14 6 1.7954 -7.3901 -0.2810 15 6 1.4786 -7.9031 -1.4265 16 6 0.7403 -9.2033 -1.5814 17 7 0.6886 -9.8868 -0.2809 18 6 0.9151 -11.2330 -0.1735 19 1 1.3013 -11.6439 0.7477 20 6 0.6484 -12.0697 -1.2485 21 7 -0.0152 -11.6127 -2.2893 22 14 1.2312 -13.8442 -1.2182 23 1 0.1805 -14.7000 -0.6111 24 1 1.5008 -14.3005 -2.6054 25 1 2.4758 -13.9427 -0.4141 26 6 0.3835 -9.0635 0.9023 27 6 1.4983 -8.0214 1.0466 28 1 -0.3632 -0.1075 1.0221 29 1 -0.3633 0.9389 -0.4178 30 1 -0.3634 -0.8313 -0.6041 31 1 1.6937 2.1314 -0.0004 32 1 4.5034 2.6423 -0.8972 33 1 4.1848 -2.0809 -0.0015 34 1 3.1759 -3.6232 -0.2131 35 1 0.9744 -5.0550 0.8263 36 1 0.7958 -4.9572 -0.9419 37 1 3.0521 -5.9459 -1.2246 38 1 3.2307 -6.0437 0.5437 39 1 1.7606 -7.3672 -2.3208 40 1 -0.2736 -9.0072 -1.9303 41 1 1.2596 -9.8332 -2.3035 42 1 -0.2013 -12.1972 -3.0407 43 1 -0.5768 -8.5657 0.7676 44 1 0.3518 -9.6931 1.7915 45 1 2.3995 -8.5024 1.4268 46 1 1.1805 -7.2509 1.7490 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161189824.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:43 Heat of formation + Delta-G solvation = -4.473906 kcal Electronic energy + Delta-G solvation = -27077.778853 eV Core-core repulsion = 23161.587168 eV Total energy + Delta-G solvation = -3916.191686 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.30273 -39.63351 -37.96540 -37.44556 -35.69119 -34.23407 -33.59862 -31.73106 -30.90162 -29.80969 -28.82488 -28.07789 -25.52038 -24.60187 -23.25687 -22.70519 -22.26601 -21.19839 -20.81386 -18.92512 -18.17605 -17.60116 -17.53760 -16.34677 -16.15183 -15.82466 -15.42205 -15.29354 -15.02258 -14.51998 -14.31565 -14.05666 -13.68647 -13.58390 -13.37883 -13.26221 -13.14266 -12.98944 -12.73486 -12.61011 -12.23304 -12.15438 -11.99657 -11.58656 -11.42680 -11.03089 -10.88365 -10.73750 -10.40158 -10.31098 -10.20883 -10.06326 -9.83152 -9.76941 -9.54797 -9.51082 -9.18753 -8.66161 -7.92865 -6.67233 -5.78085 -3.20583 0.07655 0.66131 2.42666 2.73188 3.01010 3.06668 3.32727 3.37760 3.44170 3.46075 3.99795 4.18105 4.27599 4.49496 4.52558 4.70928 4.96916 5.07022 5.08132 5.21001 5.25190 5.27384 5.39263 5.41979 5.54499 5.60270 5.63262 5.76778 5.85705 5.96639 5.98616 6.07987 6.15149 6.20948 6.27368 6.39756 6.56571 6.80100 6.90451 6.91982 7.20137 7.24731 7.30367 7.34536 7.41815 7.76006 7.88995 7.92629 8.42077 9.22169 9.83741 10.43790 11.32140 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.032618 B = 0.001845 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.204287 B =15171.706198 C =15488.092103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.036 3.964 3 C -0.198 4.198 4 C 0.335 3.665 5 O -0.481 6.481 6 N -0.512 5.512 7 C 0.166 3.834 8 C -0.203 4.203 9 C 0.562 3.438 10 O -0.527 6.527 11 N -0.723 5.723 12 C 0.125 3.875 13 C -0.093 4.093 14 C -0.143 4.143 15 C -0.146 4.146 16 C 0.197 3.803 17 N -0.596 5.596 18 C -0.245 4.245 19 H 0.067 0.933 20 C -0.001 4.001 21 N -0.911 5.911 22 Si 0.906 3.094 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.143 3.857 27 C -0.091 4.091 28 H 0.086 0.914 29 H 0.065 0.935 30 H 0.102 0.898 31 H 0.148 0.852 32 H 0.405 0.595 33 H 0.165 0.835 34 H 0.398 0.602 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.091 0.909 40 H 0.039 0.961 41 H 0.090 0.910 42 H 0.254 0.746 43 H 0.024 0.976 44 H 0.056 0.944 45 H 0.062 0.938 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.486 26.296 2.288 27.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.028 3.972 3 C -0.219 4.219 4 C 0.158 3.842 5 O -0.289 6.289 6 N -0.231 5.231 7 C 0.007 3.993 8 C -0.209 4.209 9 C 0.348 3.652 10 O -0.404 6.404 11 N -0.375 5.375 12 C 0.002 3.998 13 C -0.130 4.130 14 C -0.144 4.144 15 C -0.165 4.165 16 C 0.072 3.928 17 N -0.319 5.319 18 C -0.375 4.375 19 H 0.084 0.916 20 C -0.199 4.199 21 N -0.556 5.556 22 Si 0.736 3.264 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.016 3.984 27 C -0.130 4.130 28 H 0.104 0.896 29 H 0.084 0.916 30 H 0.121 0.879 31 H 0.166 0.834 32 H 0.264 0.736 33 H 0.182 0.818 34 H 0.233 0.767 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.109 0.891 40 H 0.056 0.944 41 H 0.108 0.892 42 H 0.064 0.936 43 H 0.042 0.958 44 H 0.074 0.926 45 H 0.081 0.919 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.438 26.173 2.821 27.100 hybrid contribution 0.174 -0.712 -0.637 0.971 sum 6.612 25.460 2.183 26.395 Atomic orbital electron populations 1.21140 0.88508 1.03898 1.04523 1.20405 0.97803 0.90571 0.88470 1.22020 0.93695 0.99671 1.06522 1.19379 0.87113 0.85222 0.92516 1.84719 1.75971 1.34054 1.34149 1.67170 1.42026 0.98257 1.15597 1.22732 0.90255 0.95298 0.91048 1.20931 0.95069 0.94667 1.10197 1.17868 0.86993 0.83293 0.77030 1.90772 1.13450 1.87021 1.49190 1.46042 1.10936 1.06322 1.74179 1.21502 0.95185 0.80089 1.03018 1.20920 0.97116 0.92861 1.02143 1.20212 1.03193 0.95100 0.95910 1.23152 0.97919 0.99441 0.96010 1.19705 0.96521 0.87652 0.88914 1.44096 1.81856 1.04321 1.01608 1.19162 1.36074 0.82201 1.00053 0.91565 1.25091 0.98709 0.97915 0.98149 1.69977 1.42099 1.35359 1.08152 0.86237 0.78499 0.84842 0.76838 1.21405 1.21613 1.20548 1.20999 0.93863 0.92143 0.91385 1.20794 1.00562 0.98048 0.93616 0.89560 0.91583 0.87924 0.83433 0.73612 0.81836 0.76729 0.90933 0.90972 0.91463 0.91372 0.89099 0.94381 0.89203 0.93619 0.95801 0.92580 0.91936 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 8.83 36.01 0.32 -0.72 16 2 C 0.04 0.32 5.95 -103.96 -0.62 -0.30 16 3 C -0.20 -1.49 9.70 -39.34 -0.38 -1.87 16 4 C 0.34 2.87 7.74 -16.96 -0.13 2.74 16 5 O -0.48 -3.32 13.55 -18.18 -0.25 -3.56 16 6 N -0.51 -4.96 10.37 -12.96 -0.13 -5.09 16 7 C 0.17 1.39 10.69 -17.14 -0.18 1.20 16 8 C -0.20 -1.92 5.89 -104.82 -0.62 -2.54 16 9 C 0.56 6.31 7.71 -12.43 -0.10 6.21 16 10 O -0.53 -7.51 13.51 5.29 0.07 -7.44 16 11 N -0.72 -6.99 5.51 -61.33 -0.34 -7.33 16 12 C 0.12 1.48 5.66 -4.05 -0.02 1.46 16 13 C -0.09 -1.12 5.32 -27.89 -0.15 -1.27 16 14 C -0.14 -2.39 5.11 -100.99 -0.52 -2.90 16 15 C -0.15 -2.75 9.47 -35.78 -0.34 -3.09 16 16 C 0.20 4.70 5.18 -5.10 -0.03 4.68 16 17 N -0.60 -15.00 3.00 -173.56 -0.52 -15.52 16 18 C -0.25 -6.74 9.70 -15.06 -0.15 -6.88 16 19 H 0.07 1.78 7.85 -52.48 -0.41 1.37 16 20 C 0.00 -0.02 5.10 -17.43 -0.09 -0.11 16 21 N -0.91 -26.30 11.02 55.49 0.61 -25.69 16 22 Si 0.91 21.69 29.57 -169.99 -5.03 16.67 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 C 0.14 2.99 6.59 -3.43 -0.02 2.97 16 27 C -0.09 -1.58 5.95 -28.08 -0.17 -1.74 16 28 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.39 8.06 -51.93 -0.42 -0.03 16 30 H 0.10 1.06 5.96 -51.93 -0.31 0.75 16 31 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 32 H 0.41 0.69 9.06 45.56 0.41 1.10 16 33 H 0.16 0.90 6.46 -52.49 -0.34 0.56 16 34 H 0.40 2.69 6.56 -40.82 -0.27 2.42 16 35 H 0.07 0.95 8.11 -51.93 -0.42 0.53 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.07 0.75 7.78 -51.93 -0.40 0.35 16 38 H 0.07 0.74 8.11 -51.93 -0.42 0.32 16 39 H 0.09 1.51 7.73 -52.48 -0.41 1.11 16 40 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.09 2.38 6.49 -51.93 -0.34 2.04 16 42 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 43 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.06 1.14 7.96 -51.93 -0.41 0.73 16 45 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.05 0.78 8.10 -51.93 -0.42 0.36 16 LS Contribution 377.75 15.07 5.69 5.69 Total: -1.00 -33.88 377.75 -8.91 -42.79 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -5.83 Total: 1.66 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -3.19 Total: -2.18 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: -0.38 Total: -53.63 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: -0.17 Total: -11.00 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.88 -8.91 -42.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161189824.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.313 kcal (2) G-P(sol) polarization free energy of solvation -33.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds