Wall clock time and date at job start Tue Mar 31 2020 17:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37994 * 120.82185 * 2 1 4 4 C 1.39134 * 119.26650 * 180.27479 * 3 2 1 5 5 O 1.35497 * 119.52729 * 179.70318 * 4 3 2 6 6 N 1.32435 * 120.94483 * 359.72180 * 4 3 2 7 7 C 1.31640 * 121.80359 * 0.02562 * 6 4 3 8 8 C 1.39565 * 120.62338 * 359.97438 * 7 6 4 9 9 C 1.47618 * 120.49661 * 180.02562 * 8 7 6 10 10 O 1.21583 * 119.99573 * 173.71057 * 9 8 7 11 11 N 1.34777 * 120.00102 * 353.71760 * 9 8 7 12 12 C 1.46500 * 120.00065 * 180.27450 * 11 9 8 13 13 C 1.52990 * 109.47136 * 179.72094 * 12 11 9 14 14 C 1.50704 * 109.47134 * 179.97438 * 13 12 11 15 15 C 1.29453 * 117.69536 * 95.00186 * 14 13 12 16 16 C 1.50321 * 123.65437 * 180.86207 * 15 14 13 17 17 N 1.47006 * 109.16426 * 349.01925 * 16 15 14 18 18 C 1.36932 * 121.37779 * 222.96846 * 17 16 15 19 19 H 1.08005 * 120.00275 * 152.94292 * 18 17 16 20 20 C 1.38816 * 120.00271 * 332.94559 * 18 17 16 21 21 N 1.31620 * 119.99580 * 349.22459 * 20 18 17 22 22 Si 1.86792 * 120.00409 * 169.22071 * 20 18 17 23 23 H 1.48495 * 109.47045 * 90.00145 * 22 20 18 24 24 H 1.48501 * 109.47406 * 210.00079 * 22 20 18 25 25 H 1.48505 * 109.47177 * 330.00139 * 22 20 18 26 26 C 1.47338 * 117.24897 * 42.94908 * 17 16 15 27 27 C 1.49973 * 117.69462 * 274.74097 * 14 13 12 28 28 H 1.09003 * 109.46400 * 263.99563 * 1 2 3 29 29 H 1.08998 * 109.46984 * 23.98748 * 1 2 3 30 30 H 1.08998 * 109.47338 * 143.99761 * 1 2 3 31 31 H 1.07996 * 120.37266 * 359.97438 * 3 2 1 32 32 H 0.96704 * 113.99938 * 270.01935 * 5 4 3 33 33 H 1.07998 * 119.69093 * 179.97438 * 7 6 4 34 34 H 0.96998 * 119.99896 * 359.97438 * 11 9 8 35 35 H 1.08998 * 109.46934 * 299.72812 * 12 11 9 36 36 H 1.09002 * 109.46982 * 59.71805 * 12 11 9 37 37 H 1.08999 * 109.47282 * 299.99622 * 13 12 11 38 38 H 1.08997 * 109.47147 * 60.00370 * 13 12 11 39 39 H 1.08005 * 118.17370 * 0.88108 * 15 14 13 40 40 H 1.09004 * 109.52440 * 108.92383 * 16 15 14 41 41 H 1.08994 * 109.52104 * 229.11528 * 16 15 14 42 42 H 0.96995 * 120.00217 * 179.97438 * 21 20 18 43 43 H 1.09002 * 109.78277 * 57.81376 * 26 17 16 44 44 H 1.09001 * 109.77750 * 178.61754 * 26 17 16 45 45 H 1.08996 * 109.31652 * 281.29086 * 27 14 13 46 46 H 1.08997 * 109.30952 * 40.71752 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1850 0.0000 4 6 3.6049 1.1473 -0.0058 5 8 4.3044 2.3077 -0.0120 6 7 4.2548 -0.0066 -0.0058 7 6 3.6205 -1.1601 -0.0009 8 6 2.2256 -1.2044 0.0052 9 6 1.5171 -2.4994 0.0113 10 8 0.3077 -2.5301 0.1318 11 7 2.2110 -3.6477 -0.1166 12 6 1.5074 -4.9327 -0.1166 13 6 2.5192 -6.0682 -0.2816 14 6 1.7954 -7.3901 -0.2810 15 6 1.4786 -7.9031 -1.4265 16 6 0.7403 -9.2033 -1.5814 17 7 0.6886 -9.8868 -0.2809 18 6 0.9151 -11.2330 -0.1735 19 1 1.3013 -11.6439 0.7477 20 6 0.6484 -12.0697 -1.2485 21 7 -0.0152 -11.6127 -2.2893 22 14 1.2312 -13.8442 -1.2182 23 1 0.1805 -14.7000 -0.6111 24 1 1.5008 -14.3005 -2.6054 25 1 2.4758 -13.9427 -0.4141 26 6 0.3835 -9.0635 0.9023 27 6 1.4983 -8.0214 1.0466 28 1 -0.3632 -0.1075 1.0221 29 1 -0.3633 0.9389 -0.4178 30 1 -0.3634 -0.8313 -0.6041 31 1 1.6937 2.1314 -0.0004 32 1 4.5034 2.6423 -0.8972 33 1 4.1848 -2.0809 -0.0015 34 1 3.1759 -3.6232 -0.2131 35 1 0.9744 -5.0550 0.8263 36 1 0.7958 -4.9572 -0.9419 37 1 3.0521 -5.9459 -1.2246 38 1 3.2307 -6.0437 0.5437 39 1 1.7606 -7.3672 -2.3208 40 1 -0.2736 -9.0072 -1.9303 41 1 1.2596 -9.8332 -2.3035 42 1 -0.2013 -12.1972 -3.0407 43 1 -0.5768 -8.5657 0.7676 44 1 0.3518 -9.6931 1.7915 45 1 2.3995 -8.5024 1.4268 46 1 1.1805 -7.2509 1.7490 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161189824.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:42 Heat of formation + Delta-G solvation = -30.104852 kcal Electronic energy + Delta-G solvation = -27078.890295 eV Core-core repulsion = 23161.587168 eV Total energy + Delta-G solvation = -3917.303127 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.96743 -40.43535 -39.43640 -38.05926 -36.84024 -35.33206 -34.69018 -33.26499 -31.92999 -31.40000 -30.01435 -28.89343 -27.09859 -25.46067 -24.62753 -24.03466 -23.18232 -22.41626 -21.91914 -19.48987 -19.45117 -18.93391 -18.19761 -17.55385 -17.06256 -16.91899 -16.67752 -16.49492 -15.95261 -15.68443 -15.52253 -15.29410 -15.07191 -14.98089 -14.45513 -14.23654 -14.01779 -13.81141 -13.78336 -13.59896 -13.42160 -13.29753 -13.16866 -12.82155 -12.75655 -12.70530 -12.58595 -12.33553 -12.17169 -11.86725 -11.66827 -11.24858 -11.04482 -10.71862 -10.69206 -10.47960 -10.23046 -9.96964 -9.46614 -8.69395 -7.87243 -5.33245 -0.55889 0.05770 1.43421 1.46879 1.47677 1.57381 1.68813 2.10106 2.46807 2.50898 2.68372 3.30259 3.43445 3.56900 3.61613 3.69696 3.90008 3.99608 4.12215 4.13394 4.18600 4.32821 4.42624 4.57443 4.60535 4.63073 4.66158 4.71946 4.74325 4.88684 4.93631 5.00242 5.02308 5.08978 5.20472 5.26386 5.28012 5.36232 5.43734 5.47587 5.53651 5.61531 5.90352 6.31017 6.36289 6.45713 6.51757 6.75515 7.13674 7.14817 7.83954 8.39798 9.20983 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.032618 B = 0.001845 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.204287 B =15171.706198 C =15488.092103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.026 3.974 3 C -0.193 4.193 4 C 0.334 3.666 5 O -0.489 6.489 6 N -0.534 5.534 7 C 0.171 3.829 8 C -0.217 4.217 9 C 0.561 3.439 10 O -0.563 6.563 11 N -0.710 5.710 12 C 0.134 3.866 13 C -0.080 4.080 14 C -0.120 4.120 15 C -0.175 4.175 16 C 0.207 3.793 17 N -0.615 5.615 18 C -0.258 4.258 19 H 0.070 0.930 20 C -0.056 4.056 21 N -0.942 5.942 22 Si 0.973 3.027 23 H -0.285 1.285 24 H -0.293 1.293 25 H -0.269 1.269 26 C 0.135 3.865 27 C -0.087 4.087 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.172 0.828 32 H 0.426 0.574 33 H 0.190 0.810 34 H 0.415 0.585 35 H 0.063 0.937 36 H 0.054 0.946 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.114 0.886 40 H 0.002 0.998 41 H 0.054 0.946 42 H 0.249 0.751 43 H 0.018 0.982 44 H 0.058 0.942 45 H 0.068 0.932 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.656 28.271 3.417 29.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.018 3.982 3 C -0.214 4.214 4 C 0.157 3.843 5 O -0.300 6.300 6 N -0.254 5.254 7 C 0.013 3.987 8 C -0.222 4.222 9 C 0.349 3.651 10 O -0.444 6.444 11 N -0.362 5.362 12 C 0.010 3.990 13 C -0.118 4.118 14 C -0.121 4.121 15 C -0.194 4.194 16 C 0.082 3.918 17 N -0.340 5.340 18 C -0.388 4.388 19 H 0.087 0.913 20 C -0.251 4.251 21 N -0.589 5.589 22 Si 0.800 3.200 23 H -0.212 1.212 24 H -0.219 1.219 25 H -0.194 1.194 26 C 0.009 3.991 27 C -0.126 4.126 28 H 0.099 0.901 29 H 0.108 0.892 30 H 0.098 0.902 31 H 0.189 0.811 32 H 0.289 0.711 33 H 0.207 0.793 34 H 0.253 0.747 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.103 0.897 38 H 0.113 0.887 39 H 0.131 0.869 40 H 0.020 0.980 41 H 0.072 0.928 42 H 0.058 0.942 43 H 0.036 0.964 44 H 0.076 0.924 45 H 0.086 0.914 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.653 28.184 3.957 29.747 hybrid contribution -0.513 -1.218 -0.913 1.606 sum 8.140 26.967 3.044 28.332 Atomic orbital electron populations 1.21065 0.88484 1.04214 1.03876 1.20576 0.98034 0.91036 0.88547 1.22182 0.93383 1.00131 1.05664 1.19587 0.87612 0.85421 0.91727 1.84669 1.75770 1.33403 1.36166 1.67236 1.42613 0.98906 1.16639 1.23074 0.89854 0.95989 0.89830 1.20848 0.95608 0.93900 1.11872 1.18142 0.86618 0.84086 0.76248 1.90766 1.15092 1.87563 1.50949 1.45818 1.11704 1.05157 1.73551 1.21215 0.94889 0.81018 1.01845 1.20822 0.96913 0.89738 1.04323 1.20565 1.00555 0.96302 0.94637 1.22840 1.00405 0.97946 0.98194 1.19343 0.95021 0.89592 0.87844 1.44388 1.82204 1.04300 1.03075 1.19517 1.35527 0.83604 1.00125 0.91273 1.25898 0.99273 1.01953 0.97988 1.70166 1.43516 1.36505 1.08674 0.85195 0.78250 0.79948 0.76574 1.21155 1.21909 1.19374 1.21199 0.95189 0.92749 0.89931 1.20750 0.99191 0.97800 0.94841 0.90133 0.89189 0.90201 0.81078 0.71092 0.79295 0.74744 0.91861 0.92797 0.89667 0.88741 0.86852 0.98029 0.92823 0.94151 0.96401 0.92386 0.91357 0.89547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.90 8.83 71.24 0.63 -1.27 16 2 C 0.03 0.42 5.95 -19.43 -0.12 0.31 16 3 C -0.19 -2.46 9.70 22.43 0.22 -2.25 16 4 C 0.33 4.95 7.74 84.82 0.66 5.61 16 5 O -0.49 -5.55 13.55 -87.98 -1.19 -6.74 16 6 N -0.53 -9.15 10.37 -307.80 -3.19 -12.34 16 7 C 0.17 2.46 10.69 85.04 0.91 3.37 16 8 C -0.22 -3.75 5.89 -19.99 -0.12 -3.87 16 9 C 0.56 11.88 7.71 86.72 0.67 12.55 16 10 O -0.56 -15.98 13.51 -3.98 -0.05 -16.03 16 11 N -0.71 -11.94 5.51 -466.20 -2.57 -14.50 16 12 C 0.13 2.87 5.66 86.38 0.49 3.36 16 13 C -0.08 -1.66 5.32 29.85 0.16 -1.50 16 14 C -0.12 -3.74 5.11 -15.13 -0.08 -3.82 16 15 C -0.17 -6.57 9.47 27.11 0.26 -6.31 16 16 C 0.21 10.35 5.18 85.42 0.44 10.80 16 17 N -0.62 -31.75 3.00 -703.03 -2.11 -33.86 16 18 C -0.26 -14.42 9.70 84.04 0.82 -13.61 16 19 H 0.07 3.73 7.85 -2.91 -0.02 3.71 16 20 C -0.06 -3.21 5.10 84.86 0.43 -2.78 16 21 N -0.94 -56.69 11.02 21.65 0.24 -56.45 16 22 Si 0.97 45.38 29.57 68.60 2.03 47.41 16 23 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 24 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 25 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 26 C 0.13 5.63 6.59 86.32 0.57 6.20 16 27 C -0.09 -2.82 5.95 29.72 0.18 -2.64 16 28 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.09 0.92 8.06 -2.39 -0.02 0.90 16 30 H 0.08 1.67 5.96 -2.39 -0.01 1.66 16 31 H 0.17 1.26 8.06 -2.91 -0.02 1.24 16 32 H 0.43 0.38 9.06 -74.05 -0.67 -0.29 16 33 H 0.19 1.45 6.46 -2.91 -0.02 1.43 16 34 H 0.41 4.11 6.56 -92.71 -0.61 3.50 16 35 H 0.06 1.51 8.11 -2.39 -0.02 1.49 16 36 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.08 1.55 7.78 -2.39 -0.02 1.53 16 38 H 0.09 1.56 8.11 -2.39 -0.02 1.54 16 39 H 0.11 3.69 7.73 -2.91 -0.02 3.67 16 40 H 0.00 0.11 8.14 -2.38 -0.02 0.09 16 41 H 0.05 3.01 6.49 -2.39 -0.02 2.99 16 42 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 43 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.06 2.35 7.96 -2.39 -0.02 2.33 16 45 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 46 H 0.09 2.26 8.10 -2.39 -0.02 2.24 16 Total: -1.00 -76.57 377.75 -0.99 -77.56 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -0.26 Total: 10.82 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: 6.11 Total: 4.14 kcal Atomic # 7 Polarization: -109.53 SS G_CDS: -7.63 Total: -117.16 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -1.25 Total: -22.77 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -76.57 -0.99 -77.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161189824.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.457 kcal (2) G-P(sol) polarization free energy of solvation -76.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds