Wall clock time and date at job start Tue Mar 31 2020 16:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38358 * 119.40490 * 2 1 4 4 C 1.38340 * 119.45906 * 180.02562 * 3 2 1 5 5 C 1.39994 * 118.34833 * 0.02562 * 4 3 2 6 6 C 1.47517 * 120.59557 * 180.02562 * 5 4 3 7 7 O 1.21589 * 119.99912 * 180.02562 * 6 5 4 8 8 N 1.34778 * 120.00452 * 0.02562 * 6 5 4 9 9 C 1.46496 * 120.00239 * 180.27655 * 8 6 5 10 10 C 1.52999 * 109.47042 * 179.72653 * 9 8 6 11 11 C 1.50701 * 109.47166 * 180.02562 * 10 9 8 12 12 C 1.29454 * 117.69450 * 94.99748 * 11 10 9 13 13 C 1.50324 * 123.64935 * 180.86010 * 12 11 10 14 14 N 1.47010 * 109.16824 * 349.02180 * 13 12 11 15 15 C 1.36932 * 121.37739 * 222.97011 * 14 13 12 16 16 H 1.07997 * 120.00077 * 155.96879 * 15 14 13 17 17 C 1.38812 * 120.00060 * 335.97539 * 15 14 13 18 18 N 1.31622 * 119.99569 * 344.50555 * 17 15 14 19 19 Si 1.86793 * 120.00063 * 164.51279 * 17 15 14 20 20 H 1.48499 * 109.47433 * 359.97438 * 19 17 15 21 21 H 1.48509 * 109.47058 * 119.99737 * 19 17 15 22 22 H 1.48503 * 109.47205 * 239.99361 * 19 17 15 23 23 C 1.47347 * 117.24772 * 42.94577 * 14 13 12 24 24 C 1.49972 * 117.69266 * 274.73802 * 11 10 9 25 25 C 1.40282 * 118.80315 * 0.27683 * 5 4 3 26 26 O 1.35430 * 119.79631 * 179.72651 * 25 5 4 27 27 N 1.31883 * 119.40905 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.47143 * 90.00039 * 1 2 3 29 29 H 1.09006 * 109.47098 * 209.99748 * 1 2 3 30 30 H 1.08993 * 109.47393 * 329.99803 * 1 2 3 31 31 H 1.07997 * 120.27501 * 359.97438 * 3 2 1 32 32 H 1.07994 * 120.82726 * 179.97438 * 4 3 2 33 33 H 0.96997 * 119.99352 * 359.97438 * 8 6 5 34 34 H 1.09003 * 109.47086 * 299.72299 * 9 8 6 35 35 H 1.08998 * 109.47243 * 59.72076 * 9 8 6 36 36 H 1.09003 * 109.46890 * 299.99766 * 10 9 8 37 37 H 1.08998 * 109.47573 * 59.99624 * 10 9 8 38 38 H 1.07998 * 118.17646 * 0.88016 * 12 11 10 39 39 H 1.09003 * 109.52189 * 108.92665 * 13 12 11 40 40 H 1.08994 * 109.52195 * 229.11542 * 13 12 11 41 41 H 0.97004 * 119.99598 * 180.02562 * 18 17 15 42 42 H 1.09000 * 109.77648 * 57.81046 * 23 14 13 43 43 H 1.09002 * 109.77453 * 178.62008 * 23 14 13 44 44 H 1.09000 * 109.31258 * 281.28858 * 24 11 10 45 45 H 1.09003 * 109.31083 * 40.71546 * 24 11 10 46 46 H 0.96701 * 114.00130 * 89.99722 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5697 1.2066 -0.0005 5 6 4.2356 -0.0248 -0.0016 6 6 5.7097 -0.0812 -0.0017 7 8 6.2768 -1.1567 -0.0031 8 7 6.4278 1.0593 -0.0001 9 6 7.8917 1.0032 -0.0063 10 6 8.4565 2.4251 -0.0099 11 6 9.9624 2.3674 -0.0169 12 6 10.5621 2.4434 -1.1617 13 6 12.0551 2.3809 -1.3256 14 7 12.6908 2.4900 -0.0046 15 6 13.7946 3.2760 0.1928 16 1 14.0172 3.6565 1.1786 17 6 14.6273 3.5837 -0.8744 18 7 14.5464 2.8938 -1.9924 19 14 15.8627 4.9766 -0.7236 20 1 15.7545 5.5906 0.6242 21 1 17.2354 4.4438 -0.9166 22 1 15.5801 6.0031 -1.7589 23 6 12.0907 1.7192 1.0985 24 6 10.6608 2.2321 1.3033 25 6 3.4758 -1.2040 -0.0080 26 8 4.0992 -2.4063 -0.0148 27 7 2.1546 -1.1489 -0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 1.6411 2.1376 -0.0004 32 1 4.1222 2.1345 -0.0010 33 1 5.9753 1.9172 0.0006 34 1 8.2389 0.4766 0.8827 35 1 8.2313 0.4750 -0.8972 36 1 8.1093 2.9516 -0.8990 37 1 8.1169 2.9533 0.8810 38 1 9.9561 2.5583 -2.0482 39 1 12.3316 1.4322 -1.7857 40 1 12.3867 3.2040 -1.9585 41 1 15.1285 3.1086 -2.7380 42 1 12.0735 0.6600 0.8416 43 1 12.6690 1.8690 2.0103 44 1 10.6895 3.2033 1.7972 45 1 10.1135 1.5280 1.9302 46 1 4.2805 -2.7603 0.8666 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161320617.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:39 Heat of formation + Delta-G solvation = -4.993135 kcal Electronic energy + Delta-G solvation = -27080.453197 eV Core-core repulsion = 23164.238995 eV Total energy + Delta-G solvation = -3916.214201 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.24160 -39.37167 -37.91560 -37.51657 -35.43361 -33.97276 -33.21269 -32.05553 -31.35269 -29.87272 -29.06081 -28.02454 -25.42038 -23.87561 -23.52043 -22.93062 -22.43943 -21.05178 -20.77244 -19.01071 -18.05829 -17.60621 -17.35103 -16.27227 -16.02790 -15.61749 -15.39029 -15.11046 -14.93290 -14.74170 -14.29760 -14.01217 -13.97200 -13.68634 -13.51586 -13.33053 -13.03992 -12.74733 -12.65671 -12.52596 -12.22009 -12.01315 -11.94088 -11.59425 -11.42710 -11.02998 -10.91642 -10.74285 -10.45153 -10.41570 -10.28250 -10.23691 -9.81948 -9.77553 -9.53593 -9.35702 -9.12025 -8.65668 -7.93016 -6.72033 -5.78226 -3.16942 0.13887 0.62494 2.54118 2.73471 3.02448 3.12875 3.37502 3.38243 3.45034 3.47246 4.03189 4.11971 4.29938 4.47164 4.50024 4.79045 4.88096 5.04510 5.07014 5.08029 5.15937 5.25279 5.37071 5.40159 5.45107 5.51334 5.55264 5.63209 5.77605 5.94364 5.98712 6.02580 6.13701 6.20058 6.28409 6.39007 6.55594 6.78942 6.91100 7.14398 7.23303 7.26185 7.33649 7.41011 7.43637 7.75906 7.88377 8.00179 8.39743 9.21236 9.84132 10.42814 11.32177 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.033298 B = 0.001850 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.693593 B =15131.269528 C =15441.667068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.175 3.825 3 C -0.192 4.192 4 C -0.025 4.025 5 C -0.211 4.211 6 C 0.559 3.441 7 O -0.517 6.517 8 N -0.726 5.726 9 C 0.125 3.875 10 C -0.091 4.091 11 C -0.144 4.144 12 C -0.145 4.145 13 C 0.196 3.804 14 N -0.596 5.596 15 C -0.244 4.244 16 H 0.069 0.931 17 C -0.003 4.003 18 N -0.909 5.909 19 Si 0.904 3.096 20 H -0.278 1.278 21 H -0.291 1.291 22 H -0.290 1.290 23 C 0.143 3.857 24 C -0.091 4.091 25 C 0.377 3.623 26 O -0.459 6.459 27 N -0.510 5.510 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.146 0.854 32 H 0.144 0.856 33 H 0.396 0.604 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.091 0.909 39 H 0.039 0.961 40 H 0.091 0.909 41 H 0.253 0.747 42 H 0.024 0.976 43 H 0.056 0.944 44 H 0.062 0.938 45 H 0.052 0.948 46 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.608 -1.742 5.462 29.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.037 3.963 3 C -0.212 4.212 4 C -0.051 4.051 5 C -0.218 4.218 6 C 0.345 3.655 7 O -0.393 6.393 8 N -0.378 5.378 9 C 0.002 3.998 10 C -0.129 4.129 11 C -0.144 4.144 12 C -0.165 4.165 13 C 0.071 3.929 14 N -0.319 5.319 15 C -0.374 4.374 16 H 0.086 0.914 17 C -0.200 4.200 18 N -0.555 5.555 19 Si 0.734 3.266 20 H -0.203 1.203 21 H -0.218 1.218 22 H -0.216 1.216 23 C 0.016 3.984 24 C -0.130 4.130 25 C 0.197 3.803 26 O -0.267 6.267 27 N -0.230 5.230 28 H 0.103 0.897 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.164 0.836 32 H 0.161 0.839 33 H 0.231 0.769 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.109 0.891 39 H 0.056 0.944 40 H 0.109 0.891 41 H 0.063 0.937 42 H 0.042 0.958 43 H 0.074 0.926 44 H 0.081 0.919 45 H 0.071 0.929 46 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -28.463 -3.266 4.739 29.039 hybrid contribution 0.919 1.871 0.303 2.106 sum -27.544 -1.395 5.042 28.036 Atomic orbital electron populations 1.20847 0.88045 1.04066 1.03746 1.21314 0.97169 0.87215 0.90642 1.21916 0.94467 0.99680 1.05128 1.21742 0.94620 0.97017 0.91746 1.21165 0.95073 0.94484 1.11055 1.17801 0.85855 0.84529 0.77359 1.90844 1.71676 1.28351 1.48397 1.46000 1.08048 1.08188 1.75546 1.21484 0.77159 0.98072 1.03040 1.20913 0.94988 0.94904 1.02126 1.20214 0.92235 1.06050 0.95947 1.23131 0.99927 0.97372 0.96025 1.19713 0.84139 1.00984 0.88085 1.44143 1.30885 1.52037 1.04821 1.19227 1.00413 1.22277 0.95459 0.91354 1.24996 0.97927 0.99699 0.97425 1.70032 1.40920 1.39650 1.04851 0.86186 0.80882 0.82043 0.77461 1.20336 1.21755 1.21645 1.20995 0.91246 0.93798 0.92362 1.20790 0.97877 1.00485 0.93823 1.19159 0.86027 0.85249 0.89899 1.84730 1.76303 1.31726 1.33920 1.67174 1.09376 1.30455 1.16019 0.89665 0.89974 0.90026 0.83637 0.83866 0.76932 0.91024 0.91030 0.91536 0.91455 0.89069 0.94370 0.89133 0.93687 0.95766 0.92558 0.91928 0.92928 0.73336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.46 10.16 36.00 0.37 -0.10 16 2 C 0.17 1.31 6.78 -82.53 -0.56 0.75 16 3 C -0.19 -1.12 9.71 -39.50 -0.38 -1.50 16 4 C -0.03 -0.17 9.64 -38.89 -0.37 -0.55 16 5 C -0.21 -2.17 5.90 -104.69 -0.62 -2.79 16 6 C 0.56 6.97 7.77 -12.48 -0.10 6.87 16 7 O -0.52 -8.40 15.19 -16.48 -0.25 -8.65 16 8 N -0.73 -7.51 5.51 -61.36 -0.34 -7.85 16 9 C 0.13 1.57 5.66 -4.04 -0.02 1.55 16 10 C -0.09 -1.14 5.32 -27.88 -0.15 -1.28 16 11 C -0.14 -2.43 5.11 -100.99 -0.52 -2.95 16 12 C -0.14 -2.78 9.47 -35.78 -0.34 -3.12 16 13 C 0.20 4.72 5.23 -5.10 -0.03 4.69 16 14 N -0.60 -15.08 3.01 -173.56 -0.52 -15.60 16 15 C -0.24 -6.74 9.71 -15.06 -0.15 -6.88 16 16 H 0.07 1.84 7.88 -52.49 -0.41 1.43 16 17 C 0.00 -0.08 5.01 -17.43 -0.09 -0.16 16 18 N -0.91 -26.44 11.08 55.49 0.61 -25.83 16 19 Si 0.90 21.76 29.58 -169.99 -5.03 16.73 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 C 0.14 3.01 6.59 -3.43 -0.02 2.98 16 24 C -0.09 -1.58 5.95 -28.09 -0.17 -1.75 16 25 C 0.38 4.30 7.77 -16.61 -0.13 4.17 16 26 O -0.46 -5.48 11.66 -39.75 -0.46 -5.94 16 27 N -0.51 -5.38 10.28 -9.21 -0.09 -5.47 16 28 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.16 8.07 -51.93 -0.42 -0.26 16 31 H 0.15 0.39 8.06 -52.49 -0.42 -0.04 16 32 H 0.14 0.55 6.51 -52.49 -0.34 0.21 16 33 H 0.40 2.81 6.57 -40.82 -0.27 2.54 16 34 H 0.07 0.98 8.11 -51.93 -0.42 0.55 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.07 0.76 7.78 -51.93 -0.40 0.36 16 37 H 0.07 0.74 8.11 -51.93 -0.42 0.32 16 38 H 0.09 1.55 7.73 -52.49 -0.41 1.15 16 39 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.09 2.42 6.41 -51.93 -0.33 2.08 16 41 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.06 1.15 7.96 -51.93 -0.41 0.73 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.05 0.79 8.10 -51.93 -0.42 0.37 16 46 H 0.41 3.14 9.06 45.56 0.41 3.55 16 LS Contribution 380.92 15.07 5.74 5.74 Total: -1.00 -35.17 380.92 -9.56 -44.73 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -5.94 Total: 2.18 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -3.27 Total: -0.06 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: -0.34 Total: -54.74 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -0.71 Total: -14.58 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.17 -9.56 -44.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161320617.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.737 kcal (2) G-P(sol) polarization free energy of solvation -35.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds