Wall clock time and date at job start Tue Mar 31 2020 16:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38358 * 119.40490 * 2 1 4 4 C 1.38340 * 119.45906 * 180.02562 * 3 2 1 5 5 C 1.39994 * 118.34833 * 0.02562 * 4 3 2 6 6 C 1.47517 * 120.59557 * 180.02562 * 5 4 3 7 7 O 1.21589 * 119.99912 * 180.02562 * 6 5 4 8 8 N 1.34778 * 120.00452 * 0.02562 * 6 5 4 9 9 C 1.46496 * 120.00239 * 180.27655 * 8 6 5 10 10 C 1.52999 * 109.47042 * 179.72653 * 9 8 6 11 11 C 1.50701 * 109.47166 * 180.02562 * 10 9 8 12 12 C 1.29454 * 117.69450 * 94.99748 * 11 10 9 13 13 C 1.50324 * 123.64935 * 180.86010 * 12 11 10 14 14 N 1.47010 * 109.16824 * 349.02180 * 13 12 11 15 15 C 1.36932 * 121.37739 * 222.97011 * 14 13 12 16 16 H 1.07997 * 120.00077 * 155.96879 * 15 14 13 17 17 C 1.38812 * 120.00060 * 335.97539 * 15 14 13 18 18 N 1.31622 * 119.99569 * 344.50555 * 17 15 14 19 19 Si 1.86793 * 120.00063 * 164.51279 * 17 15 14 20 20 H 1.48499 * 109.47433 * 359.97438 * 19 17 15 21 21 H 1.48509 * 109.47058 * 119.99737 * 19 17 15 22 22 H 1.48503 * 109.47205 * 239.99361 * 19 17 15 23 23 C 1.47347 * 117.24772 * 42.94577 * 14 13 12 24 24 C 1.49972 * 117.69266 * 274.73802 * 11 10 9 25 25 C 1.40282 * 118.80315 * 0.27683 * 5 4 3 26 26 O 1.35430 * 119.79631 * 179.72651 * 25 5 4 27 27 N 1.31883 * 119.40905 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.47143 * 90.00039 * 1 2 3 29 29 H 1.09006 * 109.47098 * 209.99748 * 1 2 3 30 30 H 1.08993 * 109.47393 * 329.99803 * 1 2 3 31 31 H 1.07997 * 120.27501 * 359.97438 * 3 2 1 32 32 H 1.07994 * 120.82726 * 179.97438 * 4 3 2 33 33 H 0.96997 * 119.99352 * 359.97438 * 8 6 5 34 34 H 1.09003 * 109.47086 * 299.72299 * 9 8 6 35 35 H 1.08998 * 109.47243 * 59.72076 * 9 8 6 36 36 H 1.09003 * 109.46890 * 299.99766 * 10 9 8 37 37 H 1.08998 * 109.47573 * 59.99624 * 10 9 8 38 38 H 1.07998 * 118.17646 * 0.88016 * 12 11 10 39 39 H 1.09003 * 109.52189 * 108.92665 * 13 12 11 40 40 H 1.08994 * 109.52195 * 229.11542 * 13 12 11 41 41 H 0.97004 * 119.99598 * 180.02562 * 18 17 15 42 42 H 1.09000 * 109.77648 * 57.81046 * 23 14 13 43 43 H 1.09002 * 109.77453 * 178.62008 * 23 14 13 44 44 H 1.09000 * 109.31258 * 281.28858 * 24 11 10 45 45 H 1.09003 * 109.31083 * 40.71546 * 24 11 10 46 46 H 0.96701 * 114.00130 * 89.99722 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5697 1.2066 -0.0005 5 6 4.2356 -0.0248 -0.0016 6 6 5.7097 -0.0812 -0.0017 7 8 6.2768 -1.1567 -0.0031 8 7 6.4278 1.0593 -0.0001 9 6 7.8917 1.0032 -0.0063 10 6 8.4565 2.4251 -0.0099 11 6 9.9624 2.3674 -0.0169 12 6 10.5621 2.4434 -1.1617 13 6 12.0551 2.3809 -1.3256 14 7 12.6908 2.4900 -0.0046 15 6 13.7946 3.2760 0.1928 16 1 14.0172 3.6565 1.1786 17 6 14.6273 3.5837 -0.8744 18 7 14.5464 2.8938 -1.9924 19 14 15.8627 4.9766 -0.7236 20 1 15.7545 5.5906 0.6242 21 1 17.2354 4.4438 -0.9166 22 1 15.5801 6.0031 -1.7589 23 6 12.0907 1.7192 1.0985 24 6 10.6608 2.2321 1.3033 25 6 3.4758 -1.2040 -0.0080 26 8 4.0992 -2.4063 -0.0148 27 7 2.1546 -1.1489 -0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 1.6411 2.1376 -0.0004 32 1 4.1222 2.1345 -0.0010 33 1 5.9753 1.9172 0.0006 34 1 8.2389 0.4766 0.8827 35 1 8.2313 0.4750 -0.8972 36 1 8.1093 2.9516 -0.8990 37 1 8.1169 2.9533 0.8810 38 1 9.9561 2.5583 -2.0482 39 1 12.3316 1.4322 -1.7857 40 1 12.3867 3.2040 -1.9585 41 1 15.1285 3.1086 -2.7380 42 1 12.0735 0.6600 0.8416 43 1 12.6690 1.8690 2.0103 44 1 10.6895 3.2033 1.7972 45 1 10.1135 1.5280 1.9302 46 1 4.2805 -2.7603 0.8666 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161320617.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:38 Heat of formation + Delta-G solvation = -31.122103 kcal Electronic energy + Delta-G solvation = -27081.586234 eV Core-core repulsion = 23164.238995 eV Total energy + Delta-G solvation = -3917.347238 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.93396 -40.27950 -39.41325 -38.28483 -36.71212 -35.23729 -34.18451 -33.03439 -32.61660 -31.48529 -30.32595 -28.82088 -27.06720 -24.97137 -24.38690 -24.08665 -23.68792 -22.48243 -21.76785 -19.75187 -19.46520 -18.82991 -18.08117 -17.55962 -17.04280 -16.95423 -16.54813 -16.36229 -15.82154 -15.63254 -15.49959 -15.31571 -15.11997 -14.90742 -14.80813 -14.30494 -14.15266 -13.87162 -13.58350 -13.37783 -13.21829 -13.10309 -13.01715 -12.83421 -12.80580 -12.63806 -12.60242 -12.36024 -12.12782 -11.89328 -11.66987 -11.34837 -11.14288 -11.03030 -10.69626 -10.49429 -10.22099 -9.82003 -9.48486 -8.75444 -7.88356 -5.30588 -0.50635 0.07173 1.41013 1.46214 1.47051 1.58238 1.75445 2.06216 2.46028 2.50751 2.71703 3.28411 3.45534 3.65642 3.66849 3.69923 3.92292 3.97442 4.09181 4.12594 4.29840 4.31252 4.42615 4.56118 4.59275 4.67889 4.69175 4.80440 4.87085 4.89475 4.91496 4.98003 5.02525 5.09287 5.14492 5.18202 5.24187 5.35033 5.42166 5.50671 5.50880 5.60959 5.88424 6.28743 6.33458 6.43416 6.53646 6.82186 7.12847 7.14917 7.83040 8.37976 9.20416 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.033298 B = 0.001850 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.693593 B =15131.269528 C =15441.667068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.164 3.836 3 C -0.179 4.179 4 C -0.017 4.017 5 C -0.229 4.229 6 C 0.557 3.443 7 O -0.566 6.566 8 N -0.708 5.708 9 C 0.133 3.867 10 C -0.078 4.078 11 C -0.120 4.120 12 C -0.175 4.175 13 C 0.206 3.794 14 N -0.615 5.615 15 C -0.256 4.256 16 H 0.072 0.928 17 C -0.058 4.058 18 N -0.942 5.942 19 Si 0.971 3.029 20 H -0.264 1.264 21 H -0.293 1.293 22 H -0.290 1.290 23 C 0.134 3.866 24 C -0.087 4.087 25 C 0.352 3.648 26 O -0.484 6.484 27 N -0.539 5.539 28 H 0.094 0.906 29 H 0.073 0.927 30 H 0.112 0.888 31 H 0.189 0.811 32 H 0.179 0.821 33 H 0.416 0.584 34 H 0.062 0.938 35 H 0.048 0.952 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.113 0.887 39 H 0.001 0.999 40 H 0.055 0.945 41 H 0.249 0.751 42 H 0.016 0.984 43 H 0.059 0.941 44 H 0.071 0.929 45 H 0.086 0.914 46 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.710 1.118 6.977 32.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.026 3.974 3 C -0.198 4.198 4 C -0.042 4.042 5 C -0.236 4.236 6 C 0.345 3.655 7 O -0.445 6.445 8 N -0.361 5.361 9 C 0.010 3.990 10 C -0.115 4.115 11 C -0.121 4.121 12 C -0.194 4.194 13 C 0.080 3.920 14 N -0.339 5.339 15 C -0.386 4.386 16 H 0.090 0.910 17 C -0.253 4.253 18 N -0.590 5.590 19 Si 0.800 3.200 20 H -0.189 1.189 21 H -0.221 1.221 22 H -0.217 1.217 23 C 0.009 3.991 24 C -0.125 4.125 25 C 0.172 3.828 26 O -0.293 6.293 27 N -0.260 5.260 28 H 0.112 0.888 29 H 0.092 0.908 30 H 0.130 0.870 31 H 0.206 0.794 32 H 0.197 0.803 33 H 0.254 0.746 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.104 0.896 37 H 0.116 0.884 38 H 0.131 0.869 39 H 0.018 0.982 40 H 0.073 0.927 41 H 0.058 0.942 42 H 0.035 0.965 43 H 0.078 0.922 44 H 0.089 0.911 45 H 0.104 0.896 46 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -31.609 -0.373 6.289 32.231 hybrid contribution 1.778 0.937 -0.084 2.012 sum -29.831 0.564 6.205 30.474 Atomic orbital electron populations 1.20974 0.85817 1.05181 1.04580 1.22031 0.98746 0.87162 0.89415 1.22379 0.94157 1.00587 1.02682 1.22157 0.95336 0.96740 0.89975 1.21028 0.93597 0.95674 1.13320 1.18174 0.86875 0.84156 0.76330 1.90818 1.72760 1.30198 1.50757 1.45728 1.07006 1.08722 1.74651 1.21207 0.78487 0.97768 1.01575 1.20810 0.91077 0.95055 1.04598 1.20583 0.95075 1.01738 0.94690 1.22821 0.96844 1.01530 0.98214 1.19356 0.87666 0.97777 0.87158 1.44436 1.30886 1.52526 1.06052 1.19587 1.01004 1.22367 0.95630 0.91006 1.25813 1.00146 1.02076 0.97247 1.70213 1.41963 1.41257 1.05520 0.85136 0.78116 0.78950 0.77836 1.18866 1.22054 1.21681 1.21205 0.93661 0.93131 0.91146 1.20748 0.95462 1.01536 0.94769 1.19397 0.86687 0.85311 0.91395 1.84676 1.76732 1.32750 1.35157 1.67182 1.09108 1.32450 1.17302 0.88791 0.90811 0.86993 0.79415 0.80350 0.74600 0.91963 0.93397 0.89639 0.88420 0.86922 0.98178 0.92674 0.94183 0.96546 0.92243 0.91090 0.89560 0.72312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.60 10.16 71.23 0.72 0.13 16 2 C 0.16 2.06 6.78 42.58 0.29 2.35 16 3 C -0.18 -1.32 9.71 22.32 0.22 -1.10 16 4 C -0.02 -0.16 9.64 22.72 0.22 0.06 16 5 C -0.23 -4.42 5.90 -19.91 -0.12 -4.53 16 6 C 0.56 13.40 7.77 86.69 0.67 14.07 16 7 O -0.57 -18.86 15.19 16.82 0.26 -18.61 16 8 N -0.71 -12.69 5.51 -466.30 -2.57 -15.26 16 9 C 0.13 3.04 5.66 86.38 0.49 3.53 16 10 C -0.08 -1.62 5.32 29.85 0.16 -1.46 16 11 C -0.12 -3.79 5.11 -15.14 -0.08 -3.86 16 12 C -0.17 -6.67 9.47 27.11 0.26 -6.41 16 13 C 0.21 10.38 5.23 85.42 0.45 10.82 16 14 N -0.61 -31.84 3.01 -703.01 -2.11 -33.95 16 15 C -0.26 -14.34 9.71 84.03 0.82 -13.53 16 16 H 0.07 3.88 7.88 -2.91 -0.02 3.86 16 17 C -0.06 -3.32 5.01 84.86 0.43 -2.90 16 18 N -0.94 -57.13 11.08 21.65 0.24 -56.89 16 19 Si 0.97 45.46 29.58 68.60 2.03 47.49 16 20 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 21 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 22 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 23 C 0.13 5.62 6.59 86.31 0.57 6.19 16 24 C -0.09 -2.80 5.95 29.72 0.18 -2.62 16 25 C 0.35 8.11 7.77 85.13 0.66 8.77 16 26 O -0.48 -12.38 11.66 -66.44 -0.77 -13.16 16 27 N -0.54 -11.13 10.28 -296.05 -3.04 -14.17 16 28 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 30 H 0.11 -0.06 8.07 -2.39 -0.02 -0.08 16 31 H 0.19 -0.21 8.06 -2.91 -0.02 -0.24 16 32 H 0.18 0.36 6.51 -2.91 -0.02 0.34 16 33 H 0.42 3.99 6.57 -92.71 -0.61 3.38 16 34 H 0.06 1.57 8.11 -2.39 -0.02 1.55 16 35 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.09 1.55 7.78 -2.39 -0.02 1.53 16 37 H 0.10 1.56 8.11 -2.39 -0.02 1.54 16 38 H 0.11 3.75 7.73 -2.91 -0.02 3.72 16 39 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 40 H 0.06 3.11 6.41 -2.39 -0.02 3.10 16 41 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 42 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.06 2.40 7.96 -2.39 -0.02 2.38 16 44 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 45 H 0.09 2.27 8.10 -2.39 -0.02 2.25 16 46 H 0.42 7.38 9.06 -74.06 -0.67 6.71 16 Total: -1.00 -82.49 380.92 -0.31 -82.81 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -0.26 Total: 12.23 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: 5.93 Total: 9.50 kcal Atomic # 7 Polarization: -112.78 SS G_CDS: -7.49 Total: -120.26 kcal Atomic # 8 Polarization: -31.25 SS G_CDS: -0.52 Total: -31.76 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -82.49 -0.31 -82.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161320617.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.686 kcal (2) G-P(sol) polarization free energy of solvation -82.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds