Wall clock time and date at job start Tue Mar 31 2020 16:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31485 * 119.81735 * 2 1 4 4 C 1.32742 * 121.73139 * 180.26603 * 3 2 1 5 5 N 1.38367 * 119.42906 * 179.75138 * 4 3 2 6 6 C 1.46852 * 111.00385 * 359.72455 * 5 4 3 7 7 C 1.53033 * 109.51864 * 174.17252 * 6 5 4 8 8 C 1.53152 * 109.24676 * 59.23794 * 7 6 5 9 9 C 1.53144 * 109.11149 * 302.22996 * 8 7 6 10 10 C 1.46839 * 111.00300 * 235.49297 * 5 4 3 11 11 C 1.53038 * 109.34238 * 182.64425 * 8 7 6 12 12 O 1.43234 * 108.65972 * 289.03047 * 11 8 7 13 13 C 1.42958 * 112.99585 * 291.62490 * 12 11 8 14 14 C 1.50334 * 109.82616 * 49.52045 * 13 12 11 15 15 O 1.21284 * 118.83078 * 164.16672 * 14 13 12 16 16 N 1.33872 * 122.34663 * 344.13779 * 14 13 12 17 17 C 1.39703 * 121.14030 * 359.47054 * 4 3 2 18 18 C 1.36564 * 119.49418 * 0.25743 * 17 4 3 19 19 C 1.40762 * 119.81722 * 179.74204 * 2 1 3 20 20 C 1.41196 * 120.56823 * 359.97438 * 19 2 1 21 21 H 1.08000 * 120.00297 * 334.75696 * 20 19 2 22 22 C 1.39876 * 119.99967 * 154.75360 * 20 19 2 23 23 N 1.30905 * 119.99706 * 343.67420 * 22 20 19 24 24 Si 1.86797 * 120.00104 * 163.67264 * 22 20 19 25 25 H 1.48497 * 109.46993 * 90.00279 * 24 22 20 26 26 H 1.48495 * 109.47203 * 210.00041 * 24 22 20 27 27 H 1.48494 * 109.47008 * 330.00260 * 24 22 20 28 28 H 1.08997 * 109.46927 * 270.25414 * 1 2 3 29 29 H 1.08999 * 109.47162 * 30.25828 * 1 2 3 30 30 H 1.08999 * 109.46624 * 150.25667 * 1 2 3 31 31 H 1.09005 * 109.46073 * 54.16261 * 6 5 4 32 32 H 1.08994 * 109.46261 * 294.19636 * 6 5 4 33 33 H 1.08993 * 109.51387 * 299.30127 * 7 6 5 34 34 H 1.08998 * 109.54236 * 179.18175 * 7 6 5 35 35 H 1.08995 * 109.50330 * 177.68469 * 9 8 7 36 36 H 1.09004 * 109.50413 * 297.81723 * 9 8 7 37 37 H 1.09005 * 109.45973 * 305.82893 * 10 5 4 38 38 H 1.08999 * 109.46082 * 65.78643 * 10 5 4 39 39 H 1.08999 * 109.60740 * 48.78733 * 11 8 7 40 40 H 1.08997 * 109.60903 * 169.29165 * 11 8 7 41 41 H 1.09002 * 109.41063 * 289.40362 * 13 12 11 42 42 H 1.09007 * 109.34968 * 169.59453 * 13 12 11 43 43 H 0.96995 * 118.73687 * 181.96060 * 16 14 13 44 44 H 1.07997 * 120.25601 * 180.23591 * 17 4 3 45 45 H 1.07999 * 120.79858 * 179.97438 * 18 17 4 46 46 H 0.96998 * 119.99560 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1608 1.1408 0.0000 4 6 3.4875 1.1851 -0.0052 5 7 4.1267 2.4123 -0.0102 6 6 3.1539 3.5124 -0.0153 7 6 3.8902 4.8466 0.1258 8 6 4.8739 5.0057 -1.0372 9 6 5.8465 3.8228 -1.0367 10 6 5.0542 2.5180 -1.1437 11 6 5.6585 6.3081 -0.8628 12 8 4.7771 7.4103 -1.1075 13 6 4.3712 7.5079 -2.4748 14 6 3.8831 6.1708 -2.9585 15 8 3.2355 6.1201 -3.9827 16 7 4.1383 5.0339 -2.2993 17 6 4.2495 0.0142 0.0000 18 6 3.6200 -1.1976 0.0054 19 6 2.2069 -1.2213 0.0055 20 6 1.5092 -2.4488 0.0116 21 1 0.5070 -2.4983 0.4111 22 6 2.1159 -3.6006 -0.4999 23 7 3.1748 -3.4989 -1.2628 24 14 1.4152 -5.2840 -0.0943 25 1 0.4078 -5.6606 -1.1182 26 1 2.5103 -6.2869 -0.0850 27 1 0.7705 -5.2427 1.2428 28 1 -0.3633 0.0046 1.0276 29 1 -0.3633 0.8876 -0.5178 30 1 -0.3632 -0.8923 -0.5099 31 1 2.4623 3.3895 0.8182 32 1 2.5982 3.5015 -0.9528 33 1 4.4360 4.8633 1.0691 34 1 3.1698 5.6643 0.1075 35 1 6.5238 3.9082 -1.8864 36 1 6.4213 3.8246 -0.1105 37 1 5.7426 1.6729 -1.1296 38 1 4.4901 2.5111 -2.0763 39 1 6.0459 6.3684 0.1542 40 1 6.4843 6.3356 -1.5737 41 1 5.2185 7.8259 -3.0824 42 1 3.5682 8.2399 -2.5618 43 1 3.8224 4.1968 -2.6738 44 1 5.3282 0.0670 -0.0005 45 1 4.1883 -2.1160 0.0092 46 1 3.5953 -4.2977 -1.6178 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165348051.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:53 Heat of formation + Delta-G solvation = -40.310768 kcal Electronic energy + Delta-G solvation = -29091.863413 eV Core-core repulsion = 25174.117724 eV Total energy + Delta-G solvation = -3917.745689 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.23534 -39.36134 -38.12727 -37.43820 -35.13930 -33.75220 -32.07782 -31.45643 -30.72521 -30.16389 -28.42887 -26.97135 -26.96663 -24.50430 -23.30599 -22.88151 -21.43509 -20.57627 -20.10281 -19.10074 -17.76696 -17.38287 -17.05791 -16.56642 -15.96450 -15.52380 -15.22197 -14.97572 -14.87448 -14.70835 -14.28245 -14.12782 -13.93084 -13.58406 -13.22602 -13.04745 -12.79696 -12.41508 -12.28166 -12.09473 -11.94420 -11.70719 -11.60000 -11.51565 -11.24380 -11.20722 -11.03297 -10.93983 -10.84863 -10.67274 -10.58672 -10.49271 -9.86739 -9.61310 -9.44068 -9.19258 -8.65811 -8.27556 -8.07878 -7.12006 -6.85138 -4.43033 2.36097 2.52895 2.88328 2.90779 2.99193 3.02235 3.09948 3.46221 3.81704 4.11283 4.21332 4.36663 4.55969 4.56179 4.64192 4.82423 5.03468 5.12599 5.19401 5.28475 5.39454 5.47552 5.59924 5.62534 5.68428 5.74637 5.89202 5.99869 6.12556 6.26623 6.27704 6.35070 6.37819 6.45056 6.61209 6.66653 6.70054 6.74003 6.91198 7.01541 7.14357 7.26009 7.30554 7.39752 7.75335 7.94846 7.96931 8.11889 8.42200 8.64673 8.72419 9.55081 10.02664 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.024572 B = 0.002775 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.255650 B =10089.024062 C =10291.116957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.017 3.983 3 N -0.490 5.490 4 C 0.163 3.837 5 N -0.463 5.463 6 C 0.074 3.926 7 C -0.120 4.120 8 C 0.133 3.867 9 C -0.118 4.118 10 C 0.057 3.943 11 C 0.055 3.945 12 O -0.367 6.367 13 C 0.048 3.952 14 C 0.489 3.511 15 O -0.550 6.550 16 N -0.704 5.704 17 C -0.151 4.151 18 C -0.117 4.117 19 C 0.059 3.941 20 C -0.445 4.445 21 H 0.084 0.916 22 C 0.073 3.927 23 N -0.793 5.793 24 Si 0.910 3.090 25 H -0.268 1.268 26 H -0.275 1.275 27 H -0.259 1.259 28 H 0.047 0.953 29 H 0.046 0.954 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.037 0.963 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.030 0.970 39 H 0.117 0.883 40 H 0.064 0.936 41 H 0.089 0.911 42 H 0.129 0.871 43 H 0.403 0.597 44 H 0.099 0.901 45 H 0.127 0.873 46 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.170 13.488 0.964 15.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.125 4.125 3 N -0.202 5.202 4 C -0.067 4.067 5 N -0.183 5.183 6 C -0.054 4.054 7 C -0.159 4.159 8 C 0.046 3.954 9 C -0.157 4.157 10 C -0.070 4.070 11 C -0.022 4.022 12 O -0.285 6.285 13 C -0.031 4.031 14 C 0.275 3.725 15 O -0.428 6.428 16 N -0.359 5.359 17 C -0.173 4.173 18 C -0.143 4.143 19 C 0.054 3.946 20 C -0.475 4.475 21 H 0.102 0.898 22 C -0.145 4.145 23 N -0.418 5.418 24 Si 0.734 3.266 25 H -0.194 1.194 26 H -0.200 1.200 27 H -0.183 1.183 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.055 0.945 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.110 0.890 37 H 0.103 0.897 38 H 0.049 0.951 39 H 0.135 0.865 40 H 0.082 0.918 41 H 0.107 0.893 42 H 0.147 0.853 43 H 0.242 0.758 44 H 0.117 0.883 45 H 0.145 0.855 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.847 14.486 0.948 16.050 hybrid contribution -0.122 -2.338 -0.903 2.509 sum 6.725 12.147 0.046 13.885 Atomic orbital electron populations 1.20239 0.91198 1.01091 1.00251 1.20838 0.94864 0.87638 1.09111 1.66691 1.08231 1.31108 1.14186 1.18790 0.88365 0.88440 1.11146 1.59317 1.18357 1.01071 1.39522 1.21728 0.93363 0.88159 1.02158 1.22081 0.98486 0.98204 0.97144 1.21224 0.93061 0.96553 0.84516 1.21938 0.97143 0.93037 1.03578 1.22171 0.95683 0.97367 0.91814 1.23098 0.91346 0.84067 1.03712 1.88194 1.66051 1.48967 1.25240 1.22815 1.01804 0.94649 0.83860 1.21007 0.79928 0.87385 0.84176 1.90791 1.39843 1.87178 1.25006 1.45966 1.56710 1.09585 1.23614 1.20811 0.98291 0.92575 1.05664 1.21304 0.94817 0.96395 1.01776 1.18276 0.92341 0.93100 0.90857 1.19499 1.01672 0.91855 1.34425 0.89791 1.25966 0.94266 1.01685 0.92558 1.69817 1.17799 1.31904 1.22309 0.86266 0.79465 0.80542 0.80294 1.19362 1.20035 1.18316 0.93431 0.93461 0.91422 0.89729 0.94462 0.89926 0.90804 0.90812 0.89035 0.89726 0.95132 0.86459 0.91816 0.89327 0.85296 0.75846 0.88267 0.85499 0.90662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.46 9.58 36.01 0.34 -1.12 16 2 C 0.02 0.42 6.86 -81.79 -0.56 -0.14 16 3 N -0.49 -11.47 8.53 -8.04 -0.07 -11.54 16 4 C 0.16 3.55 6.41 -155.13 -0.99 2.56 16 5 N -0.46 -8.06 4.66 -173.16 -0.81 -8.87 16 6 C 0.07 1.20 4.47 -3.83 -0.02 1.18 16 7 C -0.12 -1.46 4.96 -26.64 -0.13 -1.59 16 8 C 0.13 1.40 0.82 -131.85 -0.11 1.29 16 9 C -0.12 -1.22 5.05 -26.64 -0.13 -1.35 16 10 C 0.06 0.83 5.05 -3.84 -0.02 0.81 16 11 C 0.05 0.45 5.55 37.18 0.21 0.65 16 12 O -0.37 -3.55 10.64 -35.23 -0.37 -3.92 16 13 C 0.05 0.45 6.98 35.83 0.25 0.70 16 14 C 0.49 6.38 7.84 -11.57 -0.09 6.29 16 15 O -0.55 -9.38 17.84 5.55 0.10 -9.28 16 16 N -0.70 -8.81 4.32 -48.02 -0.21 -9.02 16 17 C -0.15 -3.38 9.09 -39.64 -0.36 -3.74 16 18 C -0.12 -2.89 8.73 -39.01 -0.34 -3.23 16 19 C 0.06 1.50 5.58 -106.65 -0.59 0.91 16 20 C -0.44 -11.08 8.14 -37.85 -0.31 -11.39 16 21 H 0.08 1.99 6.86 -52.49 -0.36 1.63 16 22 C 0.07 1.74 5.19 -17.33 -0.09 1.65 16 23 N -0.79 -19.43 10.95 55.54 0.61 -18.82 16 24 Si 0.91 17.75 29.59 -169.99 -5.03 12.72 16 25 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 26 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 27 H -0.26 -5.03 7.11 56.52 0.40 -4.62 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.07 1.39 6.76 -51.93 -0.35 1.04 16 31 H 0.08 1.53 7.68 -51.93 -0.40 1.13 16 32 H 0.04 0.67 7.31 -51.93 -0.38 0.29 16 33 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.07 0.91 8.03 -51.93 -0.42 0.49 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.08 1.25 6.63 -51.93 -0.34 0.91 16 38 H 0.03 0.49 6.62 -51.93 -0.34 0.14 16 39 H 0.12 0.74 8.10 -51.93 -0.42 0.32 16 40 H 0.06 0.43 8.07 -51.93 -0.42 0.01 16 41 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.13 1.06 8.14 -51.92 -0.42 0.63 16 43 H 0.40 5.73 6.53 -40.82 -0.27 5.47 16 44 H 0.10 1.97 7.11 -52.49 -0.37 1.60 16 45 H 0.13 3.20 6.26 -52.49 -0.33 2.87 16 46 H 0.28 6.30 8.30 -40.82 -0.34 5.97 16 LS Contribution 359.36 15.07 5.42 5.42 Total: -1.00 -29.46 359.36 -9.81 -39.27 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -6.50 Total: 10.57 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -2.95 Total: -6.52 kcal Atomic # 7 Polarization: -47.78 SS G_CDS: -0.47 Total: -48.25 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: -0.28 Total: -13.21 kcal Atomic # 14 Polarization: 17.75 SS G_CDS: -5.03 Total: 12.72 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.46 -9.81 -39.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165348051.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.042 kcal (2) G-P(sol) polarization free energy of solvation -29.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds