Wall clock time and date at job start Tue Mar 31 2020 16:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31485 * 119.81735 * 2 1 4 4 C 1.32742 * 121.73139 * 180.26603 * 3 2 1 5 5 N 1.38367 * 119.42906 * 179.75138 * 4 3 2 6 6 C 1.46852 * 111.00385 * 359.72455 * 5 4 3 7 7 C 1.53033 * 109.51864 * 174.17252 * 6 5 4 8 8 C 1.53152 * 109.24676 * 59.23794 * 7 6 5 9 9 C 1.53144 * 109.11149 * 302.22996 * 8 7 6 10 10 C 1.46839 * 111.00300 * 235.49297 * 5 4 3 11 11 C 1.53038 * 109.34238 * 182.64425 * 8 7 6 12 12 O 1.43234 * 108.65972 * 289.03047 * 11 8 7 13 13 C 1.42958 * 112.99585 * 291.62490 * 12 11 8 14 14 C 1.50334 * 109.82616 * 49.52045 * 13 12 11 15 15 O 1.21284 * 118.83078 * 164.16672 * 14 13 12 16 16 N 1.33872 * 122.34663 * 344.13779 * 14 13 12 17 17 C 1.39703 * 121.14030 * 359.47054 * 4 3 2 18 18 C 1.36564 * 119.49418 * 0.25743 * 17 4 3 19 19 C 1.40762 * 119.81722 * 179.74204 * 2 1 3 20 20 C 1.41196 * 120.56823 * 359.97438 * 19 2 1 21 21 H 1.08000 * 120.00297 * 334.75696 * 20 19 2 22 22 C 1.39876 * 119.99967 * 154.75360 * 20 19 2 23 23 N 1.30905 * 119.99706 * 343.67420 * 22 20 19 24 24 Si 1.86797 * 120.00104 * 163.67264 * 22 20 19 25 25 H 1.48497 * 109.46993 * 90.00279 * 24 22 20 26 26 H 1.48495 * 109.47203 * 210.00041 * 24 22 20 27 27 H 1.48494 * 109.47008 * 330.00260 * 24 22 20 28 28 H 1.08997 * 109.46927 * 270.25414 * 1 2 3 29 29 H 1.08999 * 109.47162 * 30.25828 * 1 2 3 30 30 H 1.08999 * 109.46624 * 150.25667 * 1 2 3 31 31 H 1.09005 * 109.46073 * 54.16261 * 6 5 4 32 32 H 1.08994 * 109.46261 * 294.19636 * 6 5 4 33 33 H 1.08993 * 109.51387 * 299.30127 * 7 6 5 34 34 H 1.08998 * 109.54236 * 179.18175 * 7 6 5 35 35 H 1.08995 * 109.50330 * 177.68469 * 9 8 7 36 36 H 1.09004 * 109.50413 * 297.81723 * 9 8 7 37 37 H 1.09005 * 109.45973 * 305.82893 * 10 5 4 38 38 H 1.08999 * 109.46082 * 65.78643 * 10 5 4 39 39 H 1.08999 * 109.60740 * 48.78733 * 11 8 7 40 40 H 1.08997 * 109.60903 * 169.29165 * 11 8 7 41 41 H 1.09002 * 109.41063 * 289.40362 * 13 12 11 42 42 H 1.09007 * 109.34968 * 169.59453 * 13 12 11 43 43 H 0.96995 * 118.73687 * 181.96060 * 16 14 13 44 44 H 1.07997 * 120.25601 * 180.23591 * 17 4 3 45 45 H 1.07999 * 120.79858 * 179.97438 * 18 17 4 46 46 H 0.96998 * 119.99560 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1608 1.1408 0.0000 4 6 3.4875 1.1851 -0.0052 5 7 4.1267 2.4123 -0.0102 6 6 3.1539 3.5124 -0.0153 7 6 3.8902 4.8466 0.1258 8 6 4.8739 5.0057 -1.0372 9 6 5.8465 3.8228 -1.0367 10 6 5.0542 2.5180 -1.1437 11 6 5.6585 6.3081 -0.8628 12 8 4.7771 7.4103 -1.1075 13 6 4.3712 7.5079 -2.4748 14 6 3.8831 6.1708 -2.9585 15 8 3.2355 6.1201 -3.9827 16 7 4.1383 5.0339 -2.2993 17 6 4.2495 0.0142 0.0000 18 6 3.6200 -1.1976 0.0054 19 6 2.2069 -1.2213 0.0055 20 6 1.5092 -2.4488 0.0116 21 1 0.5070 -2.4983 0.4111 22 6 2.1159 -3.6006 -0.4999 23 7 3.1748 -3.4989 -1.2628 24 14 1.4152 -5.2840 -0.0943 25 1 0.4078 -5.6606 -1.1182 26 1 2.5103 -6.2869 -0.0850 27 1 0.7705 -5.2427 1.2428 28 1 -0.3633 0.0046 1.0276 29 1 -0.3633 0.8876 -0.5178 30 1 -0.3632 -0.8923 -0.5099 31 1 2.4623 3.3895 0.8182 32 1 2.5982 3.5015 -0.9528 33 1 4.4360 4.8633 1.0691 34 1 3.1698 5.6643 0.1075 35 1 6.5238 3.9082 -1.8864 36 1 6.4213 3.8246 -0.1105 37 1 5.7426 1.6729 -1.1296 38 1 4.4901 2.5111 -2.0763 39 1 6.0459 6.3684 0.1542 40 1 6.4843 6.3356 -1.5737 41 1 5.2185 7.8259 -3.0824 42 1 3.5682 8.2399 -2.5618 43 1 3.8224 4.1968 -2.6738 44 1 5.3282 0.0670 -0.0005 45 1 4.1883 -2.1160 0.0092 46 1 3.5953 -4.2977 -1.6178 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165348051.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:52 Heat of formation + Delta-G solvation = -60.095996 kcal Electronic energy + Delta-G solvation = -29092.721365 eV Core-core repulsion = 25174.117724 eV Total energy + Delta-G solvation = -3918.603640 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.20950 -40.87878 -39.40060 -38.47539 -36.46708 -35.38153 -33.48728 -32.90811 -31.96639 -31.69961 -29.35231 -28.73785 -27.95246 -26.06714 -24.49427 -24.12788 -22.80054 -21.99260 -21.69365 -20.00547 -19.18809 -18.70238 -18.16756 -17.81971 -17.23180 -16.84917 -16.62492 -16.04796 -15.95326 -15.72989 -15.58415 -15.48518 -15.20967 -14.86043 -14.60302 -14.38588 -14.22348 -13.78881 -13.65283 -13.59123 -13.27539 -13.10598 -12.91046 -12.80888 -12.69451 -12.67889 -12.41493 -12.29308 -12.18112 -11.88912 -11.70813 -11.62746 -11.47825 -11.19851 -10.52721 -10.31875 -10.22690 -10.06631 -9.88029 -8.87521 -8.61411 -6.29522 0.74961 1.04021 1.38155 1.38948 1.47275 1.54031 2.00445 2.18552 2.62445 2.77538 2.97331 3.29861 3.51602 3.61516 3.70257 3.72942 3.95044 4.16064 4.21553 4.30277 4.32662 4.42442 4.51749 4.55652 4.56903 4.61558 4.68862 4.74707 4.75885 4.89143 4.93350 4.95161 4.96011 5.10769 5.12155 5.14236 5.20274 5.27385 5.46370 5.49501 5.54160 5.79895 5.84594 5.92007 6.21966 6.22391 6.34284 6.61289 6.80728 6.90179 6.96319 7.72348 8.27540 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.024572 B = 0.002775 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.255650 B =10089.024062 C =10291.116957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.006 4.006 3 N -0.504 5.504 4 C 0.167 3.833 5 N -0.458 5.458 6 C 0.080 3.920 7 C -0.110 4.110 8 C 0.133 3.867 9 C -0.107 4.107 10 C 0.055 3.945 11 C 0.057 3.943 12 O -0.373 6.373 13 C 0.056 3.944 14 C 0.484 3.516 15 O -0.600 6.600 16 N -0.707 5.707 17 C -0.156 4.156 18 C -0.134 4.134 19 C 0.028 3.972 20 C -0.474 4.474 21 H 0.086 0.914 22 C 0.035 3.965 23 N -0.825 5.825 24 Si 0.982 3.018 25 H -0.263 1.263 26 H -0.267 1.267 27 H -0.257 1.257 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.011 0.989 33 H 0.103 0.897 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.115 0.885 37 H 0.083 0.917 38 H 0.012 0.988 39 H 0.144 0.856 40 H 0.088 0.912 41 H 0.118 0.882 42 H 0.139 0.861 43 H 0.389 0.611 44 H 0.123 0.877 45 H 0.116 0.884 46 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.037 15.066 1.713 17.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.146 4.146 3 N -0.217 5.217 4 C -0.064 4.064 5 N -0.178 5.178 6 C -0.048 4.048 7 C -0.149 4.149 8 C 0.047 3.953 9 C -0.145 4.145 10 C -0.072 4.072 11 C -0.020 4.020 12 O -0.290 6.290 13 C -0.023 4.023 14 C 0.272 3.728 15 O -0.482 6.482 16 N -0.358 5.358 17 C -0.179 4.179 18 C -0.160 4.160 19 C 0.023 3.977 20 C -0.503 4.503 21 H 0.104 0.896 22 C -0.180 4.180 23 N -0.451 5.451 24 Si 0.803 3.197 25 H -0.188 1.188 26 H -0.192 1.192 27 H -0.181 1.181 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.029 0.971 33 H 0.121 0.879 34 H 0.092 0.908 35 H 0.116 0.884 36 H 0.134 0.866 37 H 0.101 0.899 38 H 0.030 0.970 39 H 0.162 0.838 40 H 0.106 0.894 41 H 0.136 0.864 42 H 0.157 0.843 43 H 0.225 0.775 44 H 0.141 0.859 45 H 0.134 0.866 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.734 16.091 1.726 18.390 hybrid contribution -0.649 -2.734 -1.132 3.029 sum 8.086 13.358 0.594 15.625 Atomic orbital electron populations 1.20201 0.89365 1.01290 1.01136 1.21344 0.96483 0.87667 1.09135 1.66827 1.09115 1.30832 1.14945 1.19315 0.88147 0.90264 1.08664 1.59308 1.18137 0.99539 1.40784 1.21660 0.93298 0.90045 0.99765 1.22019 0.98753 0.95082 0.99027 1.21408 0.92641 0.98610 0.82665 1.21926 0.96687 0.89934 1.05918 1.22277 0.95002 1.00242 0.89710 1.23284 0.90968 0.81662 1.06090 1.88206 1.66459 1.49224 1.25155 1.22876 1.03144 0.92090 0.84201 1.21798 0.78944 0.88666 0.83396 1.90764 1.42195 1.87946 1.27335 1.46166 1.56455 1.09067 1.24140 1.21036 0.99578 0.92066 1.05174 1.21340 0.94906 0.96889 1.02914 1.18611 0.93008 0.94017 0.92071 1.19715 1.02188 0.92638 1.35804 0.89583 1.26780 0.94441 1.05024 0.91793 1.69865 1.18983 1.33234 1.23017 0.85188 0.78831 0.75722 0.79969 1.18804 1.19192 1.18093 0.92109 0.92764 0.91547 0.92139 0.97052 0.87881 0.90815 0.88411 0.86631 0.89870 0.96986 0.83792 0.89415 0.86448 0.84315 0.77470 0.85873 0.86621 0.89989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.67 9.58 71.24 0.68 -1.99 16 2 C -0.01 -0.28 6.86 43.23 0.30 0.02 16 3 N -0.50 -24.36 8.53 -179.37 -1.53 -25.89 16 4 C 0.17 7.43 6.41 133.32 0.85 8.28 16 5 N -0.46 -15.72 4.66 -701.77 -3.27 -18.99 16 6 C 0.08 2.60 4.47 86.32 0.39 2.99 16 7 C -0.11 -2.43 4.96 30.66 0.15 -2.27 16 8 C 0.13 2.39 0.82 3.79 0.00 2.39 16 9 C -0.11 -1.82 5.05 30.65 0.15 -1.67 16 10 C 0.05 1.53 5.05 86.32 0.44 1.96 16 11 C 0.06 0.65 5.55 71.99 0.40 1.05 16 12 O -0.37 -5.71 10.64 -148.98 -1.58 -7.29 16 13 C 0.06 0.88 6.98 71.12 0.50 1.38 16 14 C 0.48 12.06 7.84 87.68 0.69 12.75 16 15 O -0.60 -20.67 17.84 -3.04 -0.05 -20.73 16 16 N -0.71 -16.87 4.32 -424.73 -1.83 -18.71 16 17 C -0.16 -7.12 9.09 22.23 0.20 -6.92 16 18 C -0.13 -6.88 8.73 22.64 0.20 -6.69 16 19 C 0.03 1.46 5.58 -21.18 -0.12 1.34 16 20 C -0.47 -24.38 8.14 23.39 0.19 -24.19 16 21 H 0.09 4.21 6.86 -2.91 -0.02 4.19 16 22 C 0.03 1.68 5.19 85.23 0.44 2.12 16 23 N -0.83 -41.48 10.95 21.82 0.24 -41.24 16 24 Si 0.98 36.66 29.59 68.60 2.03 38.69 16 25 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 26 H -0.27 -9.54 7.11 99.48 0.71 -8.83 16 27 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 28 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.07 2.81 6.76 -2.39 -0.02 2.79 16 31 H 0.06 2.23 7.68 -2.38 -0.02 2.21 16 32 H 0.01 0.42 7.31 -2.39 -0.02 0.40 16 33 H 0.10 1.90 8.14 -2.39 -0.02 1.89 16 34 H 0.07 1.67 8.03 -2.39 -0.02 1.65 16 35 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.12 1.53 8.14 -2.38 -0.02 1.51 16 37 H 0.08 2.35 6.63 -2.38 -0.02 2.33 16 38 H 0.01 0.38 6.62 -2.39 -0.02 0.37 16 39 H 0.14 0.95 8.10 -2.39 -0.02 0.94 16 40 H 0.09 0.67 8.07 -2.39 -0.02 0.65 16 41 H 0.12 1.22 8.14 -2.39 -0.02 1.21 16 42 H 0.14 1.92 8.14 -2.38 -0.02 1.91 16 43 H 0.39 11.22 6.53 -92.71 -0.60 10.62 16 44 H 0.12 4.86 7.11 -2.91 -0.02 4.84 16 45 H 0.12 6.09 6.26 -2.91 -0.02 6.07 16 46 H 0.29 13.15 8.30 -92.71 -0.77 12.38 16 Total: -1.00 -68.07 359.36 -0.13 -68.21 By element: Atomic # 1 Polarization: 34.98 SS G_CDS: 0.41 Total: 35.39 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: 5.46 Total: -9.44 kcal Atomic # 7 Polarization: -98.43 SS G_CDS: -6.40 Total: -104.83 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -1.64 Total: -28.02 kcal Atomic # 14 Polarization: 36.66 SS G_CDS: 2.03 Total: 38.69 kcal Total: -68.07 -0.13 -68.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165348051.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.112 kcal (2) G-P(sol) polarization free energy of solvation -68.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds