Wall clock time and date at job start Tue Mar 31 2020 16:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38684 * 119.27535 * 2 1 4 4 C 1.38010 * 119.62322 * 179.71750 * 3 2 1 5 5 C 1.41002 * 118.28585 * 0.52413 * 4 3 2 6 6 C 1.41006 * 120.70910 * 179.73011 * 5 4 3 7 7 H 1.08003 * 120.00208 * 151.85017 * 6 5 4 8 8 C 1.39948 * 120.00317 * 331.85150 * 6 5 4 9 9 N 1.30867 * 119.99747 * 335.17860 * 8 6 5 10 10 Si 1.86800 * 120.00421 * 155.18468 * 8 6 5 11 11 H 1.48497 * 109.46946 * 179.97438 * 10 8 6 12 12 H 1.48497 * 109.47226 * 299.99675 * 10 8 6 13 13 H 1.48503 * 109.47058 * 60.00112 * 10 8 6 14 14 C 1.41711 * 118.58368 * 359.45766 * 5 4 3 15 15 N 1.38095 * 119.90366 * 180.27324 * 14 5 4 16 16 C 1.46837 * 110.99885 * 248.76104 * 15 14 5 17 17 C 1.53047 * 109.52464 * 174.19728 * 16 15 14 18 18 C 1.53139 * 109.24808 * 59.21378 * 17 16 15 19 19 C 1.53153 * 109.10185 * 302.21459 * 18 17 16 20 20 C 1.46844 * 110.99887 * 124.50881 * 15 14 5 21 21 C 1.53026 * 109.36662 * 182.62721 * 18 17 16 22 22 O 1.43251 * 108.66455 * 288.92062 * 21 18 17 23 23 C 1.42965 * 112.98722 * 291.61539 * 22 21 18 24 24 C 1.50339 * 109.81327 * 49.57322 * 23 22 21 25 25 O 1.21277 * 118.83421 * 164.12599 * 24 23 22 26 26 N 1.33858 * 122.33860 * 344.12789 * 24 23 22 27 27 N 1.31971 * 119.27949 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.47517 * 270.02180 * 1 2 3 29 29 H 1.09000 * 109.47620 * 30.02347 * 1 2 3 30 30 H 1.09006 * 109.47280 * 150.02646 * 1 2 3 31 31 H 1.07995 * 120.18949 * 359.95085 * 3 2 1 32 32 H 1.07997 * 120.85697 * 180.25456 * 4 3 2 33 33 H 0.97003 * 120.00163 * 354.24303 * 9 8 6 34 34 H 1.08994 * 109.46541 * 294.21054 * 16 15 14 35 35 H 1.09002 * 109.46421 * 54.17858 * 16 15 14 36 36 H 1.09007 * 109.50171 * 299.28263 * 17 16 15 37 37 H 1.08998 * 109.50800 * 179.14938 * 17 16 15 38 38 H 1.08996 * 109.51089 * 297.85871 * 19 18 17 39 39 H 1.09004 * 109.50796 * 177.71349 * 19 18 17 40 40 H 1.09001 * 109.45882 * 305.82739 * 20 15 14 41 41 H 1.09002 * 109.46062 * 65.78981 * 20 15 14 42 42 H 1.08993 * 109.60647 * 48.67393 * 21 18 17 43 43 H 1.08997 * 109.60614 * 169.00708 * 21 18 17 44 44 H 1.08996 * 109.41750 * 169.68210 * 23 22 21 45 45 H 1.09007 * 109.41071 * 289.54045 * 23 22 21 46 46 H 0.97002 * 118.72838 * 181.91748 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1851 1.2097 0.0000 4 6 3.5652 1.2181 0.0059 5 6 4.2409 -0.0194 0.0004 6 6 5.6500 -0.0705 0.0004 7 1 6.1598 -0.9161 0.4379 8 6 6.3881 0.9747 -0.5666 9 7 5.8513 1.7274 -1.4928 10 14 8.1395 1.2952 -0.0016 11 1 8.6985 2.4483 -0.7519 12 1 8.1428 1.6010 1.4515 13 1 8.9699 0.0905 -0.2558 14 6 3.4736 -1.2109 0.0009 15 7 4.1074 -2.4378 0.0014 16 6 3.9075 -3.1337 -1.2761 17 6 4.7391 -4.4185 -1.2942 18 6 4.3077 -5.3155 -0.1304 19 6 4.4831 -4.5497 1.1843 20 6 3.6588 -3.2614 1.1314 21 6 5.1818 -6.5713 -0.1067 22 8 4.8269 -7.3979 -1.2215 23 6 3.5194 -7.9638 -1.1032 24 6 2.5281 -6.8881 -0.7561 25 8 1.3453 -7.1145 -0.8988 26 7 2.9047 -5.6892 -0.2950 27 7 2.1524 -1.1511 0.0005 28 1 -0.3634 0.0004 1.0277 29 1 -0.3634 0.8897 -0.5142 30 1 -0.3634 -0.8903 -0.5134 31 1 1.6364 2.1399 -0.0008 32 1 4.1134 2.1485 0.0101 33 1 4.9742 1.5108 -1.8459 34 1 2.8528 -3.3822 -1.3932 35 1 4.2211 -2.4865 -2.0952 36 1 5.7953 -4.1698 -1.1902 37 1 4.5788 -4.9425 -2.2365 38 1 5.5355 -4.3030 1.3243 39 1 4.1398 -5.1676 2.0140 40 1 3.7918 -2.7067 2.0603 41 1 2.6050 -3.5093 1.0043 42 1 6.2316 -6.2878 -0.1812 43 1 5.0150 -7.1155 0.8229 44 1 3.2371 -8.4249 -2.0496 45 1 3.5216 -8.7201 -0.3182 46 1 2.2197 -5.0435 -0.0607 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165348219.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:58 Heat of formation + Delta-G solvation = -48.374998 kcal Electronic energy + Delta-G solvation = -29714.550191 eV Core-core repulsion = 25796.454811 eV Total energy + Delta-G solvation = -3918.095380 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.12671 -39.29656 -38.07995 -37.34274 -34.75758 -34.57771 -31.97270 -30.80086 -30.70823 -30.07452 -28.27965 -27.64808 -26.61115 -24.04253 -23.03944 -22.91402 -21.53344 -20.68363 -20.35130 -18.99148 -18.02044 -17.67914 -16.97830 -16.40590 -15.80321 -15.22769 -15.11064 -14.84899 -14.73170 -14.52497 -14.45499 -14.08655 -13.78876 -13.56294 -13.42025 -13.04158 -12.85005 -12.54207 -12.18295 -12.10335 -12.00708 -11.81225 -11.50780 -11.43315 -11.37925 -11.03639 -11.03404 -10.93277 -10.74746 -10.51795 -10.47199 -10.43409 -9.76516 -9.52213 -9.25902 -9.09771 -8.58068 -8.39996 -7.69949 -7.60028 -7.25191 -4.52847 2.42583 2.44286 2.69009 2.99838 3.09457 3.19212 3.29183 3.55209 3.91674 4.20273 4.38864 4.44180 4.55383 4.66573 4.73402 4.89970 5.11032 5.18747 5.26362 5.40628 5.46302 5.55484 5.62025 5.72579 5.76399 5.84181 5.93591 6.02412 6.13350 6.15365 6.27164 6.28606 6.35980 6.38589 6.43384 6.45968 6.65488 6.77809 6.80100 6.88793 7.23373 7.27181 7.45225 7.63139 7.67733 7.85463 7.95545 8.04483 8.21256 8.67436 8.74378 9.42150 9.89137 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.012332 B = 0.004318 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.024046 B = 6483.340273 C = 8211.167027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.023 4.023 3 C -0.124 4.124 4 C -0.190 4.190 5 C 0.076 3.924 6 C -0.471 4.471 7 H 0.091 0.909 8 C 0.034 3.966 9 N -0.789 5.789 10 Si 1.066 2.934 11 H -0.275 1.275 12 H -0.274 1.274 13 H -0.273 1.273 14 C 0.154 3.846 15 N -0.446 5.446 16 C 0.068 3.932 17 C -0.116 4.116 18 C 0.135 3.865 19 C -0.119 4.119 20 C 0.064 3.936 21 C 0.055 3.945 22 O -0.367 6.367 23 C 0.048 3.952 24 C 0.489 3.511 25 O -0.553 6.553 26 N -0.703 5.703 27 N -0.478 5.478 28 H 0.047 0.953 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.099 0.901 32 H 0.113 0.887 33 H 0.298 0.702 34 H 0.032 0.968 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.091 0.909 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.035 0.965 42 H 0.118 0.882 43 H 0.063 0.937 44 H 0.128 0.872 45 H 0.088 0.912 46 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.023 -11.511 3.024 12.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.162 4.162 3 C -0.144 4.144 4 C -0.216 4.216 5 C 0.069 3.931 6 C -0.498 4.498 7 H 0.109 0.891 8 C -0.189 4.189 9 N -0.411 5.411 10 Si 0.889 3.111 11 H -0.199 1.199 12 H -0.200 1.200 13 H -0.198 1.198 14 C -0.080 4.080 15 N -0.168 5.168 16 C -0.060 4.060 17 C -0.155 4.155 18 C 0.048 3.952 19 C -0.157 4.157 20 C -0.064 4.064 21 C -0.022 4.022 22 O -0.284 6.284 23 C -0.032 4.032 24 C 0.275 3.725 25 O -0.432 6.432 26 N -0.357 5.357 27 N -0.190 5.190 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.117 0.883 32 H 0.131 0.869 33 H 0.111 0.889 34 H 0.051 0.949 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.089 0.911 38 H 0.110 0.890 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.053 0.947 42 H 0.136 0.864 43 H 0.081 0.919 44 H 0.146 0.854 45 H 0.106 0.894 46 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 2.985 -11.433 2.534 12.084 hybrid contribution -2.227 0.152 0.414 2.270 sum 0.758 -11.281 2.948 11.685 Atomic orbital electron populations 1.20250 0.91700 1.00747 1.00234 1.19935 0.94517 0.88115 1.13593 1.21356 0.94954 0.97144 1.00938 1.21428 0.93196 0.97769 1.09174 1.18102 0.94293 0.89943 0.90729 1.20503 0.91103 1.06254 1.31973 0.89076 1.27181 1.07003 0.91612 0.93084 1.70490 1.18762 1.34917 1.16969 0.83614 0.72755 0.77562 0.77163 1.19942 1.19955 1.19842 1.19223 0.86162 0.89782 1.12793 1.59355 1.54925 1.00997 1.01537 1.21949 0.97402 0.93922 0.92679 1.22003 1.01482 0.94956 0.97031 1.21205 0.80880 0.95510 0.97578 1.21954 1.02951 0.96141 0.94702 1.21939 0.96228 0.92762 0.95468 1.23104 1.00211 0.89392 0.89540 1.88199 1.31208 1.65492 1.43545 1.22805 0.81416 0.93927 1.05009 1.21003 0.90335 0.84261 0.76943 1.90775 1.18159 1.80248 1.54001 1.45992 1.08888 1.15682 1.65171 1.66728 1.11140 1.30411 1.10680 0.93420 0.93007 0.92877 0.88301 0.86910 0.88898 0.94934 0.90855 0.89536 0.91062 0.89048 0.91212 0.90870 0.94678 0.86390 0.91852 0.85377 0.89413 0.75703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.29 10.15 36.00 0.37 -0.92 16 2 C -0.02 -0.50 6.79 -82.37 -0.56 -1.06 16 3 C -0.12 -2.75 9.69 -39.50 -0.38 -3.14 16 4 C -0.19 -4.58 8.07 -38.62 -0.31 -4.89 16 5 C 0.08 1.87 5.26 -106.48 -0.56 1.31 16 6 C -0.47 -11.38 8.59 -37.89 -0.33 -11.71 16 7 H 0.09 2.17 7.72 -52.48 -0.41 1.76 16 8 C 0.03 0.79 4.96 -17.32 -0.09 0.70 16 9 N -0.79 -19.64 12.44 55.55 0.69 -18.95 16 10 Si 1.07 20.02 30.00 -169.99 -5.10 14.92 16 11 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 12 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 13 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 14 C 0.15 3.55 5.32 -155.02 -0.83 2.73 16 15 N -0.45 -8.68 3.86 -172.71 -0.67 -9.35 16 16 C 0.07 1.23 5.15 -3.83 -0.02 1.21 16 17 C -0.12 -1.62 4.96 -26.64 -0.13 -1.75 16 18 C 0.13 1.62 0.82 -131.86 -0.11 1.52 16 19 C -0.12 -1.46 5.05 -26.63 -0.13 -1.59 16 20 C 0.06 1.06 4.99 -3.84 -0.02 1.05 16 21 C 0.05 0.52 5.55 37.17 0.21 0.73 16 22 O -0.37 -3.97 10.65 -35.23 -0.38 -4.35 16 23 C 0.05 0.49 6.99 35.83 0.25 0.74 16 24 C 0.49 6.81 7.84 -11.57 -0.09 6.72 16 25 O -0.55 -9.79 17.84 5.56 0.10 -9.70 16 26 N -0.70 -9.60 4.32 -48.03 -0.21 -9.81 16 27 N -0.48 -11.01 9.59 -8.11 -0.08 -11.09 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.83 8.07 -51.93 -0.42 0.41 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.10 1.94 8.06 -52.49 -0.42 1.52 16 32 H 0.11 2.77 6.79 -52.49 -0.36 2.42 16 33 H 0.30 7.69 6.77 -40.82 -0.28 7.42 16 34 H 0.03 0.63 7.32 -51.93 -0.38 0.25 16 35 H 0.07 1.47 8.10 -51.93 -0.42 1.05 16 36 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.07 0.99 8.03 -51.93 -0.42 0.57 16 38 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.07 1.29 8.10 -51.93 -0.42 0.87 16 41 H 0.04 0.62 6.40 -51.93 -0.33 0.29 16 42 H 0.12 0.94 8.10 -51.93 -0.42 0.52 16 43 H 0.06 0.51 8.07 -51.93 -0.42 0.09 16 44 H 0.13 1.16 8.14 -51.93 -0.42 0.73 16 45 H 0.09 0.71 8.14 -51.92 -0.42 0.29 16 46 H 0.40 6.21 6.51 -40.82 -0.27 5.95 16 LS Contribution 365.25 15.07 5.50 5.50 Total: -1.00 -28.74 365.25 -9.58 -38.31 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: -6.71 Total: 12.87 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -2.73 Total: -8.37 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: -0.26 Total: -49.20 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -0.28 Total: -14.04 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.10 Total: 14.92 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -28.74 -9.58 -38.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165348219.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.062 kcal (2) G-P(sol) polarization free energy of solvation -28.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds