Wall clock time and date at job start Tue Mar 31 2020 16:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38684 * 119.27535 * 2 1 4 4 C 1.38010 * 119.62322 * 179.71750 * 3 2 1 5 5 C 1.41002 * 118.28585 * 0.52413 * 4 3 2 6 6 C 1.41006 * 120.70910 * 179.73011 * 5 4 3 7 7 H 1.08003 * 120.00208 * 151.85017 * 6 5 4 8 8 C 1.39948 * 120.00317 * 331.85150 * 6 5 4 9 9 N 1.30867 * 119.99747 * 335.17860 * 8 6 5 10 10 Si 1.86800 * 120.00421 * 155.18468 * 8 6 5 11 11 H 1.48497 * 109.46946 * 179.97438 * 10 8 6 12 12 H 1.48497 * 109.47226 * 299.99675 * 10 8 6 13 13 H 1.48503 * 109.47058 * 60.00112 * 10 8 6 14 14 C 1.41711 * 118.58368 * 359.45766 * 5 4 3 15 15 N 1.38095 * 119.90366 * 180.27324 * 14 5 4 16 16 C 1.46837 * 110.99885 * 248.76104 * 15 14 5 17 17 C 1.53047 * 109.52464 * 174.19728 * 16 15 14 18 18 C 1.53139 * 109.24808 * 59.21378 * 17 16 15 19 19 C 1.53153 * 109.10185 * 302.21459 * 18 17 16 20 20 C 1.46844 * 110.99887 * 124.50881 * 15 14 5 21 21 C 1.53026 * 109.36662 * 182.62721 * 18 17 16 22 22 O 1.43251 * 108.66455 * 288.92062 * 21 18 17 23 23 C 1.42965 * 112.98722 * 291.61539 * 22 21 18 24 24 C 1.50339 * 109.81327 * 49.57322 * 23 22 21 25 25 O 1.21277 * 118.83421 * 164.12599 * 24 23 22 26 26 N 1.33858 * 122.33860 * 344.12789 * 24 23 22 27 27 N 1.31971 * 119.27949 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.47517 * 270.02180 * 1 2 3 29 29 H 1.09000 * 109.47620 * 30.02347 * 1 2 3 30 30 H 1.09006 * 109.47280 * 150.02646 * 1 2 3 31 31 H 1.07995 * 120.18949 * 359.95085 * 3 2 1 32 32 H 1.07997 * 120.85697 * 180.25456 * 4 3 2 33 33 H 0.97003 * 120.00163 * 354.24303 * 9 8 6 34 34 H 1.08994 * 109.46541 * 294.21054 * 16 15 14 35 35 H 1.09002 * 109.46421 * 54.17858 * 16 15 14 36 36 H 1.09007 * 109.50171 * 299.28263 * 17 16 15 37 37 H 1.08998 * 109.50800 * 179.14938 * 17 16 15 38 38 H 1.08996 * 109.51089 * 297.85871 * 19 18 17 39 39 H 1.09004 * 109.50796 * 177.71349 * 19 18 17 40 40 H 1.09001 * 109.45882 * 305.82739 * 20 15 14 41 41 H 1.09002 * 109.46062 * 65.78981 * 20 15 14 42 42 H 1.08993 * 109.60647 * 48.67393 * 21 18 17 43 43 H 1.08997 * 109.60614 * 169.00708 * 21 18 17 44 44 H 1.08996 * 109.41750 * 169.68210 * 23 22 21 45 45 H 1.09007 * 109.41071 * 289.54045 * 23 22 21 46 46 H 0.97002 * 118.72838 * 181.91748 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1851 1.2097 0.0000 4 6 3.5652 1.2181 0.0059 5 6 4.2409 -0.0194 0.0004 6 6 5.6500 -0.0705 0.0004 7 1 6.1598 -0.9161 0.4379 8 6 6.3881 0.9747 -0.5666 9 7 5.8513 1.7274 -1.4928 10 14 8.1395 1.2952 -0.0016 11 1 8.6985 2.4483 -0.7519 12 1 8.1428 1.6010 1.4515 13 1 8.9699 0.0905 -0.2558 14 6 3.4736 -1.2109 0.0009 15 7 4.1074 -2.4378 0.0014 16 6 3.9075 -3.1337 -1.2761 17 6 4.7391 -4.4185 -1.2942 18 6 4.3077 -5.3155 -0.1304 19 6 4.4831 -4.5497 1.1843 20 6 3.6588 -3.2614 1.1314 21 6 5.1818 -6.5713 -0.1067 22 8 4.8269 -7.3979 -1.2215 23 6 3.5194 -7.9638 -1.1032 24 6 2.5281 -6.8881 -0.7561 25 8 1.3453 -7.1145 -0.8988 26 7 2.9047 -5.6892 -0.2950 27 7 2.1524 -1.1511 0.0005 28 1 -0.3634 0.0004 1.0277 29 1 -0.3634 0.8897 -0.5142 30 1 -0.3634 -0.8903 -0.5134 31 1 1.6364 2.1399 -0.0008 32 1 4.1134 2.1485 0.0101 33 1 4.9742 1.5108 -1.8459 34 1 2.8528 -3.3822 -1.3932 35 1 4.2211 -2.4865 -2.0952 36 1 5.7953 -4.1698 -1.1902 37 1 4.5788 -4.9425 -2.2365 38 1 5.5355 -4.3030 1.3243 39 1 4.1398 -5.1676 2.0140 40 1 3.7918 -2.7067 2.0603 41 1 2.6050 -3.5093 1.0043 42 1 6.2316 -6.2878 -0.1812 43 1 5.0150 -7.1155 0.8229 44 1 3.2371 -8.4249 -2.0496 45 1 3.5216 -8.7201 -0.3182 46 1 2.2197 -5.0435 -0.0607 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165348219.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:56 Heat of formation + Delta-G solvation = -67.173003 kcal Electronic energy + Delta-G solvation = -29715.365334 eV Core-core repulsion = 25796.454811 eV Total energy + Delta-G solvation = -3918.910523 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.20072 -40.88508 -39.38777 -38.43212 -36.37583 -36.03503 -33.23874 -32.54519 -31.98558 -31.53907 -29.50255 -29.09173 -27.70717 -25.71030 -24.29967 -24.23672 -23.00420 -22.36621 -21.70596 -20.00397 -19.82279 -18.70035 -18.15521 -17.68859 -16.93860 -16.85241 -16.33194 -16.18306 -15.99493 -15.79538 -15.60907 -15.57672 -15.05079 -14.91197 -14.86061 -14.35789 -14.27856 -14.22675 -13.61274 -13.37106 -13.29923 -13.13898 -13.06480 -12.78951 -12.62336 -12.53853 -12.40122 -12.26859 -11.95513 -11.91355 -11.74415 -11.50008 -11.47284 -11.00786 -10.54704 -10.35212 -10.26136 -10.16744 -9.49999 -9.28448 -9.05902 -6.40005 0.63581 0.85595 1.37431 1.55903 1.68050 1.83689 1.99888 2.35241 2.67389 2.75597 2.97217 3.28599 3.42914 3.51562 3.67337 3.69857 3.96032 4.15034 4.21241 4.25847 4.29053 4.33914 4.41236 4.48988 4.52733 4.53897 4.62807 4.72147 4.78044 4.81154 4.84443 4.86703 4.87750 4.94235 5.10139 5.13132 5.16982 5.20820 5.43347 5.47248 5.65661 5.75089 5.83520 6.01441 6.11370 6.20169 6.22097 6.41300 6.85073 6.95460 6.96243 7.60353 8.00670 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.012332 B = 0.004318 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.024046 B = 6483.340273 C = 8211.167027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.031 4.031 3 C -0.130 4.130 4 C -0.208 4.208 5 C 0.048 3.952 6 C -0.491 4.491 7 H 0.091 0.909 8 C 0.002 3.998 9 N -0.812 5.812 10 Si 1.116 2.884 11 H -0.278 1.278 12 H -0.264 1.264 13 H -0.252 1.252 14 C 0.152 3.848 15 N -0.451 5.451 16 C 0.076 3.924 17 C -0.106 4.106 18 C 0.138 3.862 19 C -0.107 4.107 20 C 0.066 3.934 21 C 0.057 3.943 22 O -0.373 6.373 23 C 0.055 3.945 24 C 0.484 3.516 25 O -0.599 6.599 26 N -0.706 5.706 27 N -0.493 5.493 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.051 0.949 31 H 0.125 0.875 32 H 0.100 0.900 33 H 0.280 0.720 34 H 0.013 0.987 35 H 0.041 0.959 36 H 0.097 0.903 37 H 0.073 0.927 38 H 0.107 0.893 39 H 0.096 0.904 40 H 0.058 0.942 41 H 0.021 0.979 42 H 0.141 0.859 43 H 0.090 0.910 44 H 0.140 0.860 45 H 0.119 0.881 46 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.376 -13.599 4.123 14.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.170 4.170 3 C -0.150 4.150 4 C -0.234 4.234 5 C 0.041 3.959 6 C -0.518 4.518 7 H 0.109 0.891 8 C -0.214 4.214 9 N -0.435 5.435 10 Si 0.933 3.067 11 H -0.203 1.203 12 H -0.188 1.188 13 H -0.176 1.176 14 C -0.082 4.082 15 N -0.173 5.173 16 C -0.052 4.052 17 C -0.145 4.145 18 C 0.052 3.948 19 C -0.145 4.145 20 C -0.062 4.062 21 C -0.020 4.020 22 O -0.290 6.290 23 C -0.024 4.024 24 C 0.273 3.727 25 O -0.481 6.481 26 N -0.357 5.357 27 N -0.205 5.205 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.070 0.930 31 H 0.143 0.857 32 H 0.118 0.882 33 H 0.091 0.909 34 H 0.032 0.968 35 H 0.060 0.940 36 H 0.116 0.884 37 H 0.092 0.908 38 H 0.125 0.875 39 H 0.114 0.886 40 H 0.077 0.923 41 H 0.039 0.961 42 H 0.159 0.841 43 H 0.108 0.892 44 H 0.158 0.842 45 H 0.136 0.864 46 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 4.345 -13.541 3.637 14.679 hybrid contribution -2.826 0.828 0.072 2.945 sum 1.519 -12.713 3.710 13.330 Atomic orbital electron populations 1.20292 0.88612 1.01865 1.01622 1.20729 0.96754 0.87844 1.11673 1.21648 0.94448 0.98529 1.00383 1.21459 0.94187 0.97319 1.10416 1.18473 0.95161 0.90784 0.91463 1.20590 0.91144 1.07034 1.33079 0.89135 1.28522 1.10151 0.90789 0.91975 1.70613 1.18180 1.36057 1.18630 0.83011 0.68530 0.78067 0.77089 1.20291 1.18847 1.17567 1.19622 0.86345 0.91072 1.11173 1.59397 1.54568 1.00478 1.02865 1.21843 0.97068 0.95162 0.91082 1.21942 1.01157 0.93011 0.98395 1.21304 0.80492 0.96758 0.96238 1.21912 1.02964 0.93879 0.95788 1.21960 0.96471 0.94246 0.93491 1.23255 1.00463 0.87811 0.90431 1.88213 1.30976 1.65506 1.44345 1.22900 0.80077 0.92752 1.06683 1.21777 0.90484 0.84697 0.75784 1.90751 1.20331 1.81081 1.55954 1.46160 1.09327 1.15494 1.64726 1.66904 1.11240 1.30960 1.11425 0.91774 0.90679 0.92962 0.85669 0.88174 0.90858 0.96826 0.94021 0.88436 0.90809 0.87510 0.88564 0.92339 0.96073 0.84138 0.89189 0.84202 0.86353 0.77267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.31 10.15 71.23 0.72 -1.58 16 2 C -0.03 -1.40 6.79 42.64 0.29 -1.11 16 3 C -0.13 -5.87 9.69 22.32 0.22 -5.66 16 4 C -0.21 -10.43 8.07 22.89 0.18 -10.25 16 5 C 0.05 2.44 5.26 -21.07 -0.11 2.32 16 6 C -0.49 -24.41 8.59 23.36 0.20 -24.21 16 7 H 0.09 4.38 7.72 -2.91 -0.02 4.36 16 8 C 0.00 0.10 4.96 85.25 0.42 0.53 16 9 N -0.81 -41.94 12.44 21.83 0.27 -41.67 16 10 Si 1.12 40.09 30.00 68.60 2.06 42.15 16 11 H -0.28 -10.06 7.11 99.48 0.71 -9.36 16 12 H -0.26 -8.97 7.11 99.48 0.71 -8.27 16 13 H -0.25 -8.13 7.11 99.48 0.71 -7.42 16 14 C 0.15 7.23 5.32 134.05 0.71 7.95 16 15 N -0.45 -17.92 3.86 -700.34 -2.70 -20.62 16 16 C 0.08 2.82 5.15 86.33 0.44 3.27 16 17 C -0.11 -2.85 4.96 30.66 0.15 -2.70 16 18 C 0.14 3.00 0.82 3.78 0.00 3.00 16 19 C -0.11 -2.36 5.05 30.66 0.15 -2.20 16 20 C 0.07 2.18 4.99 86.33 0.43 2.62 16 21 C 0.06 0.84 5.55 71.99 0.40 1.24 16 22 O -0.37 -6.63 10.65 -148.98 -1.59 -8.21 16 23 C 0.06 0.95 6.99 71.12 0.50 1.45 16 24 C 0.48 12.82 7.84 87.69 0.69 13.51 16 25 O -0.60 -21.11 17.84 -3.02 -0.05 -21.16 16 26 N -0.71 -18.49 4.32 -424.76 -1.83 -20.32 16 27 N -0.49 -23.31 9.59 -179.57 -1.72 -25.03 16 28 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.07 2.25 8.07 -2.39 -0.02 2.23 16 30 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 31 H 0.13 4.85 8.06 -2.91 -0.02 4.82 16 32 H 0.10 5.18 6.79 -2.91 -0.02 5.16 16 33 H 0.28 15.27 6.77 -92.71 -0.63 14.64 16 34 H 0.01 0.55 7.32 -2.39 -0.02 0.53 16 35 H 0.04 1.77 8.10 -2.39 -0.02 1.75 16 36 H 0.10 2.44 8.14 -2.38 -0.02 2.42 16 37 H 0.07 1.96 8.03 -2.39 -0.02 1.94 16 38 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.06 2.08 8.10 -2.39 -0.02 2.06 16 41 H 0.02 0.76 6.40 -2.39 -0.02 0.74 16 42 H 0.14 1.51 8.10 -2.39 -0.02 1.49 16 43 H 0.09 0.94 8.07 -2.39 -0.02 0.92 16 44 H 0.14 2.13 8.14 -2.39 -0.02 2.11 16 45 H 0.12 1.40 8.14 -2.38 -0.02 1.38 16 46 H 0.39 12.12 6.51 -92.71 -0.60 11.51 16 Total: -1.00 -66.52 365.25 0.38 -66.14 By element: Atomic # 1 Polarization: 40.02 SS G_CDS: 0.54 Total: 40.56 kcal Atomic # 6 Polarization: -17.24 SS G_CDS: 5.41 Total: -11.83 kcal Atomic # 7 Polarization: -101.66 SS G_CDS: -5.99 Total: -107.64 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -1.64 Total: -29.37 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 2.06 Total: 42.15 kcal Total: -66.52 0.38 -66.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165348219.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.032 kcal (2) G-P(sol) polarization free energy of solvation -66.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds